Conservation of cofitness between b2498 and b3871 in Escherichia coli BW25113

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2498 upp uracil phosphoribosyltransferase (VIMSS) 1.0 b3871 bipA GTP-binding protein (NCBI) 0.22 15
Escherichia coli ECRC98 1.00 JDDGAC_25760 upp uracil phosphoribosyltransferase 1.00 JDDGAC_17715 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECOR38 1.00 HEPCGN_20980 upp uracil phosphoribosyltransferase 1.00 HEPCGN_12720 typA ribosome-dependent GTPase TypA low > 85
Escherichia coli ECRC99 1.00 KEDOAH_06405 upp uracil phosphoribosyltransferase 1.00 KEDOAH_14060 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC62 1.00 BNILDI_12275 upp uracil phosphoribosyltransferase 1.00 BNILDI_05310 typA ribosome-dependent GTPase TypA — —
Escherichia coli BL21 1.00 ECD_02390 uracil phosphoribosyltransferase 1.00 ECD_03756 GTP-binding protein low > 60
Escherichia coli ECRC101 1.00 OKFHMN_21815 upp uracil phosphoribosyltransferase 1.00 OKFHMN_14090 typA ribosome-dependent GTPase TypA — —
Escherichia fergusonii Becca 1.00 EFB2_01400 Uracil phosphoribosyltransferase 1.00 EFB2_04745 GTP-binding protein TypA/BipA low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14185 uracil phosphoribosyltransferase 1.00 ECOLIN_RS22315 ribosome-dependent GTPase TypA low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01228 Uracil phosphoribosyltransferase 1.00 OHPLBJKB_04181 GTP-binding protein TypA/BipA 0.74 24
Escherichia coli ECRC102 1.00 NIAGMN_19585 upp uracil phosphoribosyltransferase 1.00 NIAGMN_11845 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC101 1.00 MCAODC_12345 upp uracil phosphoribosyltransferase 1.00 MCAODC_04590 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECOR27 1.00 NOLOHH_13465 upp uracil phosphoribosyltransferase 1.00 NOLOHH_06220 typA ribosome-dependent GTPase TypA low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.99 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.97 GFF2223 GTP-binding protein TypA/BipA 0.80 48
Klebsiella michiganensis M5al 0.96 BWI76_RS20945 uracil phosphoribosyltransferase 0.95 BWI76_RS00410 translational GTPase TypA — —
Enterobacter asburiae PDN3 0.96 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) 0.95 EX28DRAFT_4353 GTP-binding protein TypA/BipA — —
Enterobacter sp. TBS_079 0.96 MPMX20_03352 Uracil phosphoribosyltransferase 0.96 MPMX20_04594 GTP-binding protein TypA/BipA — —
Dickeya dianthicola 67-19 0.95 HGI48_RS06075 uracil phosphoribosyltransferase 0.91 HGI48_RS21220 ribosome-dependent GTPase TypA low > 71
Pantoea sp. MT58 0.95 IAI47_05185 uracil phosphoribosyltransferase 0.93 IAI47_00465 ribosome-dependent GTPase TypA low > 76
Dickeya dianthicola ME23 0.95 DZA65_RS06425 uracil phosphoribosyltransferase 0.91 DZA65_RS22195 ribosome-dependent GTPase TypA low > 75
Dickeya dadantii 3937 0.95 DDA3937_RS06030 uracil phosphoribosyltransferase 0.91 DDA3937_RS00140 ribosome-dependent GTPase TypA low > 74
Pectobacterium carotovorum WPP14 0.94 HER17_RS15460 uracil phosphoribosyltransferase 0.91 HER17_RS21425 ribosome-dependent GTPase TypA low > 75
Serratia liquefaciens MT49 0.94 IAI46_18880 uracil phosphoribosyltransferase 0.93 IAI46_24945 ribosome-dependent GTPase TypA low > 86
Rahnella sp. WP5 0.94 EX31_RS22700 uracil phosphoribosyltransferase 0.90 EX31_RS15865 ribosome-dependent GTPase TypA low > 89
Erwinia tracheiphila SCR3 0.93 LU632_RS08280 upp uracil phosphoribosyltransferase 0.91 LU632_RS22150 typA ribosome-dependent GTPase TypA low > 74
Shewanella loihica PV-4 0.89 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) 0.80 Shew_3553 GTP-binding protein TypA (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11345 uracil phosphoribosyltransferase 0.78 CSW01_13840 translational GTPase TypA low > 62
Shewanella amazonensis SB2B 0.88 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) 0.79 Sama_3415 virulence regulator BipA (RefSeq) low > 62
Shewanella sp. ANA-3 0.88 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) 0.78 Shewana3_0301 GTP-binding protein TypA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.88 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) 0.78 SO4408 bipA virulence regulator BipA (NCBI ptt file) low > 76
Dechlorosoma suillum PS 0.75 Dsui_2333 uracil phosphoribosyltransferase 0.64 Dsui_2423 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_14855 uracil phosphoribosyltransferase 0.71 AO353_12180 GTP-binding protein TypA — —
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_0969 uracil phosphoribosyltransferase 0.72 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_0969 uracil phosphoribosyltransferase 0.72 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1597 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.70 PfGW456L13_340 GTP-binding protein TypA/BipA — —
Pseudomonas sp. S08-1 0.74 OH686_17985 uracil phosphoribosyltransferase 0.74 OH686_10610 GTP-binding protein TypA/BipA low > 80
Pseudomonas simiae WCS417 0.74 PS417_04435 uracil phosphoribosyltransferase 0.70 PS417_01665 GTP-binding protein TypA — —
Pseudomonas stutzeri RCH2 0.74 Psest_1120 uracil phosphoribosyltransferase 0.73 Psest_3926 GTP-binding protein TypA/BipA low > 67
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.56 Pf1N1B4_1601 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS04485 uracil phosphoribosyltransferase 0.70 PFLU_RS01720 translational GTPase TypA — —
Desulfovibrio vulgaris Miyazaki F 0.74 DvMF_0911 uracil phosphoribosyltransferase (RefSeq) 0.49 DvMF_0822 GTP-binding protein TypA (RefSeq) low > 51
Pseudomonas fluorescens SBW25 0.74 PFLU_RS04485 uracil phosphoribosyltransferase 0.70 PFLU_RS01720 translational GTPase TypA — —
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS09615 uracil phosphoribosyltransferase 0.69 ABZR86_RS20640 translational GTPase TypA low > 74
Pseudomonas sp. RS175 0.73 PFR28_03641 Uracil phosphoribosyltransferase 0.71 PFR28_04951 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.71 Pf6N2E2_3818 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_16565 uracil phosphoribosyltransferase 0.71 AO356_09695 GTP-binding protein TypA — —
Pseudomonas putida KT2440 0.73 PP_0746 Uracil phosphoribosyltransferase 0.71 PP_5044 ribosome associated GTPase — —
Marinobacter adhaerens HP15 0.72 HP15_2306 uracil phosphoribosyltransferase 0.74 HP15_429 GTP-binding protein TypA low > 73
Lysobacter sp. OAE881 0.72 ABIE51_RS15050 uracil phosphoribosyltransferase 0.68 ABIE51_RS05990 translational GTPase TypA low > 62
Rhodanobacter denitrificans MT42 0.72 LRK55_RS02920 uracil phosphoribosyltransferase 0.69 LRK55_RS00550 translational GTPase TypA low > 63
Desulfovibrio vulgaris Hildenborough JW710 0.72 DVU1025 upp uracil phosphoribosyltransferase (TIGR) 0.49 DVU2231 typA GTP-binding protein TypA (TIGR) — —
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS03170 uracil phosphoribosyltransferase 0.69 LRK54_RS00775 translational GTPase TypA low > 59
Alteromonas macleodii MIT1002 0.72 MIT1002_02893 Uracil phosphoribosyltransferase 0.77 MIT1002_03181 hypothetical protein low > 70
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_10040 upp uracil phosphoribosyltransferase 0.68 OKGIIK_06470 typA translational GTPase TypA — —
Castellaniella sp019104865 MT123 0.71 ABCV34_RS15380 uracil phosphoribosyltransferase 0.61 ABCV34_RS02140 translational GTPase TypA — —
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.2160.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.70 Xcc-8004.4106.1 GTP-binding protein TypA/BipA — —
Acinetobacter radioresistens SK82 0.67 MPMX26_02542 Uracil phosphoribosyltransferase 0.72 MPMX26_02489 GTP-binding protein TypA/BipA low > 36
Dinoroseobacter shibae DFL-12 0.56 Dshi_0831 uracil phosphoribosyltransferase (RefSeq) 0.51 Dshi_0019 GTP-binding protein TypA (RefSeq) low > 64
Fusobacterium nucleatum SB010 0.55 HUW76_07615 uracil phosphoribosyltransferase 0.54 HUW76_06170 translational GTPase TypA low > 35
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS30815 uracil phosphoribosyltransferase 0.63 RR42_RS12810 GTP-binding protein — —
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2428 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.59 Ac3H11_2864 GTP-binding protein TypA/BipA — —
Bosea sp. OAE506 0.53 ABIE41_RS22700 uracil phosphoribosyltransferase 0.52 ABIE41_RS04255 translational GTPase TypA 0.43 4
Rhizobium sp. OAE497 0.53 ABIE40_RS00825 uracil phosphoribosyltransferase 0.54 ABIE40_RS18125 translational GTPase TypA low > 107
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_02351 uracil phosphoribosyltransferase 0.49 CCNA_00778 GTP-binding protein TypA/BipA low > 67
Caulobacter crescentus NA1000 0.53 CCNA_02351 uracil phosphoribosyltransferase 0.49 CCNA_00778 GTP-binding protein TypA/BipA low > 66
Sinorhizobium meliloti 1021 0.52 SMc04121 uracil phosphoribosyltransferase 0.53 SMc03242 GTP-binding protein low > 103
Phaeobacter inhibens DSM 17395 0.52 PGA1_c11960 uracil phosphoribosyltransferase Upp 0.51 PGA1_c15300 GTP-binding protein TypA low > 62
Agrobacterium fabrum C58 0.52 Atu0135 uracil phosphoribosyltransferase 0.53 Atu2663 GTP-binding tyrosin phosphorylated protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF1179 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.58 GFF4346 GTP-binding protein TypA/BipA 0.55 8
Variovorax sp. OAS795 0.51 ABID97_RS16850 uracil phosphoribosyltransferase 0.58 ABID97_RS16470 translational GTPase TypA low > 91
Variovorax sp. SCN45 0.50 GFF324 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.58 GFF219 GTP-binding protein TypA/BipA low > 127
Ralstonia solanacearum GMI1000 0.49 RS_RS10980 uracil phosphoribosyltransferase 0.63 RS_RS06495 translational GTPase TypA — —
Ralstonia solanacearum UW163 0.49 UW163_RS10140 uracil phosphoribosyltransferase 0.63 UW163_RS13160 translational GTPase TypA — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS03530 uracil phosphoribosyltransferase 0.63 RALBFv3_RS15715 translational GTPase TypA — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13695 uracil phosphoribosyltransferase 0.64 RPSI07_RS17640 translational GTPase TypA low > 81
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS24390 uracil phosphoribosyltransferase 0.65 QEN71_RS23065 translational GTPase TypA — —
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS06415 uracil phosphoribosyltransferase 0.64 BPHYT_RS08105 GTP-binding protein — —
Paraburkholderia graminis OAS925 0.48 ABIE53_001547 uracil phosphoribosyltransferase 0.65 ABIE53_002454 GTP-binding protein — —
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04523 uracil phosphoribosyltransferase 0.65 H281DRAFT_05111 GTP-binding protein — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS15395 uracil phosphoribosyltransferase 0.64 ABZR87_RS11245 translational GTPase TypA low > 80
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS03500 uracil phosphoribosyltransferase 0.61 HSERO_RS17980 GTP-binding protein low > 78
Rhodospirillum rubrum S1H 0.45 Rru_A2255 Uracil phosphoribosyl transferase (NCBI) 0.50 Rru_A0148 GTP-binding protein TypA (NCBI) low > 58
Azospirillum sp. SherDot2 0.45 MPMX19_02205 Uracil phosphoribosyltransferase 0.53 MPMX19_01378 GTP-binding protein TypA/BipA — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS03150 uracil phosphoribosyltransferase 0.53 AZOBR_RS09920 GTP-binding protein TypA — —
Mycobacterium tuberculosis H37Rv 0.42 Rv3309c Probable uracil phosphoribosyltransferase Upp (UMP pyrophosphorylase) (uprtase) (UMP diphosphorylase) 0.42 Rv1165 Possible GTP-binding translation elongation factor TypA (tyrosine phosphorylated protein A) (GTP-binding protein) low > 58
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_1715 upp uracil phosphoribosyltransferase 0.51 Synpcc7942_1525 typA GTP-binding protein TypA — —
Bifidobacterium breve UCC2003 0.37 BBR_RS19680 uracil phosphoribosyltransferase 0.42 BBR_RS16690 translational GTPase TypA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_14760 uracil phosphoribosyltransferase 0.49 CA264_00540 translational GTPase TypA low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_0597 Uracil phosphoribosyltransferase 0.49 Echvi_4063 GTP-binding protein TypA/BipA — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_02012 putative uracil phosphoribosyltransferase 0.51 BACOVA_01078 GTP-binding protein TypA low > 94
Bacteroides thetaiotaomicron VPI-5482 0.23 BT2791 uracil phosphoribosyltransferase (NCBI ptt file) 0.51 BT2787 GTP-binding elongation factor family protein TypA/BipA (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS10070 uracil phosphoribosyltransferase 0.50 HMPREF1058_RS10055 translational GTPase TypA low > 67
Parabacteroides merdae CL09T00C40 0.22 HMPREF1078_RS00655 uracil phosphoribosyltransferase 0.49 HMPREF1078_RS17580 translational GTPase TypA low > 61
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS06680 uracil phosphoribosyltransferase 0.50 ABI39_RS06695 translational GTPase TypA low > 72
Bacteroides stercoris CC31F 0.22 HMPREF1181_RS01165 uracil phosphoribosyltransferase 0.51 HMPREF1181_RS01180 translational GTPase TypA low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS00770 uracil phosphoribosyltransferase 0.51 ABZR88_RS00415 translational GTPase TypA — —
Pedobacter sp. GW460-11-11-14-LB5 0.20 CA265_RS19460 uracil phosphoribosyltransferase 0.50 CA265_RS23750 translational GTPase TypA low > 88

Not shown: 2 genomes with orthologs for b2498 only; 4 genomes with orthologs for b3871 only