Conservation of cofitness between b2838 and b3960 in Escherichia coli BW25113

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 1.0 b3960 argH argininosuccinate lyase (NCBI) 0.95 1
Escherichia coli BL21 1.00 ECD_02686 diaminopimelate decarboxylase, PLP-binding 1.00 ECD_03845 argininosuccinate lyase 0.78 7
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00891 Diaminopimelate decarboxylase 1.00 OHPLBJKB_04090 Argininosuccinate lyase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.99 NOLOHH_05720 argH argininosuccinate lyase low > 57
Escherichia coli ECOR38 1.00 HEPCGN_19565 lysA diaminopimelate decarboxylase 1.00 HEPCGN_12220 argH argininosuccinate lyase low > 85
Escherichia coli ECRC99 1.00 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.99 KEDOAH_14585 argH argininosuccinate lyase — —
Escherichia coli ECRC62 1.00 BNILDI_10310 lysA diaminopimelate decarboxylase 0.99 BNILDI_05805 argH argininosuccinate lyase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15930 diaminopimelate decarboxylase 0.99 ECOLIN_RS22855 argininosuccinate lyase low > 52
Escherichia fergusonii Becca 1.00 EFB2_01045 Diaminopimelate decarboxylase 0.99 EFB2_04654 Argininosuccinate lyase low > 86
Escherichia coli ECRC102 0.99 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.99 NIAGMN_11325 argH argininosuccinate lyase — —
Escherichia coli ECRC101 0.99 MCAODC_10470 lysA diaminopimelate decarboxylase 0.99 MCAODC_04075 argH argininosuccinate lyase — —
Escherichia coli ECRC101 0.99 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.99 OKFHMN_13575 argH argininosuccinate lyase — —
Escherichia coli ECRC98 0.99 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.99 JDDGAC_17200 argH argininosuccinate lyase — —
Enterobacter sp. TBS_079 0.90 MPMX20_03705 Diaminopimelate decarboxylase 0.93 MPMX20_04520 Argininosuccinate lyase 0.75 43
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.95 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) low > 78
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2916 diaminopimelate decarboxylase 0.94 EX28DRAFT_4422 argininosuccinate lyase 0.89 9
Klebsiella michiganensis M5al 0.88 BWI76_RS23360 diaminopimelate decarboxylase 0.96 BWI76_RS00855 argininosuccinate lyase 0.83 6
Serratia liquefaciens MT49 0.78 IAI46_20520 diaminopimelate decarboxylase 0.88 IAI46_24500 argininosuccinate lyase 0.72 4
Pectobacterium carotovorum WPP14 0.77 HER17_RS03710 diaminopimelate decarboxylase 0.86 HER17_RS20620 argininosuccinate lyase low > 75
Erwinia tracheiphila SCR3 0.76 LU632_RS06040 lysA diaminopimelate decarboxylase 0.88 LU632_RS19600 argH argininosuccinate lyase 0.85 4
Dickeya dadantii 3937 0.75 DDA3937_RS17425 diaminopimelate decarboxylase 0.86 DDA3937_RS20340 argininosuccinate lyase 0.83 27
Rahnella sp. WP5 0.75 EX31_RS13275 diaminopimelate decarboxylase 0.88 EX31_RS14180 argininosuccinate lyase 0.96 10
Dickeya dianthicola ME23 0.75 DZA65_RS18550 diaminopimelate decarboxylase 0.84 DZA65_RS00945 argininosuccinate lyase 0.86 2
Pantoea sp. MT58 0.75 IAI47_03860 diaminopimelate decarboxylase 0.88 IAI47_00920 argininosuccinate lyase 0.96 7
Dickeya dianthicola 67-19 0.74 HGI48_RS17485 diaminopimelate decarboxylase 0.84 HGI48_RS00885 argininosuccinate lyase 0.85 15
Acidovorax sp. GW101-3H11 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.44 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS35090 diaminopimelate decarboxylase 0.42 BPHYT_RS05210 argininosuccinate lyase — —
Pseudomonas putida KT2440 0.57 PP_2077 diaminopimelate decarboxylase 0.46 PP_0184 Argininosuccinate lyase low > 96
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) 0.42 DVU1094 argH argininosuccinate lyase (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.25 Echvi_3852 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.91 18
Lysobacter sp. OAE881 0.26 ABIE51_RS13675 diaminopimelate decarboxylase 0.22 ABIE51_RS13380 argininosuccinate lyase low > 62
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_1010 diaminopimelate decarboxylase (RefSeq) 0.41 DvMF_0048 argininosuccinate lyase (RefSeq) 0.26 41
Rhodanobacter denitrificans MT42 0.25 LRK55_RS11215 diaminopimelate decarboxylase 0.20 LRK55_RS02135 argininosuccinate lyase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS11485 diaminopimelate decarboxylase 0.20 LRK54_RS02380 argininosuccinate lyase low > 59
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS12130 diaminopimelate decarboxylase 0.20 ABZR86_RS08695 arginosuccinate lyase (EC 4.3.2.1) (from data) low > 74
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.20 OKGIIK_09430 argH argininosuccinate lyase low > 52
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02296 diaminopimelate decarboxylase 0.40 CCNA_02294 argininosuccinate lyase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS12545 diaminopimelate decarboxylase 0.39 A4249_RS12555 argininosuccinate lyase 0.99 14
Caulobacter crescentus NA1000 0.23 CCNA_02296 diaminopimelate decarboxylase 0.40 CCNA_02294 argininosuccinate lyase — —
Bosea sp. OAE506 0.23 ABIE41_RS08740 diaminopimelate decarboxylase 0.44 ABIE41_RS08750 argininosuccinate lyase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_024635 diaminopimelate decarboxylase 0.42 TX73_024645 argininosuccinate lyase — —
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.40 Ga0059261_2049 argininosuccinate lyase 0.98 20
Phaeobacter inhibens DSM 17395 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA 0.44 PGA1_c03450 argininosuccinate lyase ArgH — —
Rhodospirillum rubrum S1H 0.22 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.41 Rru_A0397 Argininosuccinate lyase (NCBI) — —
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_09035 diaminopimelate decarboxylase 0.47 AO353_09000 argininosuccinate lyase — —
Azospirillum sp. SherDot2 0.22 MPMX19_05819 Diaminopimelate decarboxylase 0.45 MPMX19_05817 Argininosuccinate lyase — —
Pseudomonas sp. RS175 0.21 PFR28_04375 Diaminopimelate decarboxylase 0.47 PFR28_04367 Argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_0182 diaminopimelate decarboxylase 0.47 Psyr_0065 argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_0182 diaminopimelate decarboxylase 0.47 Psyr_0065 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.48 Pf1N1B4_2183 Argininosuccinate lyase (EC 4.3.2.1) — —
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.48 PfGW456L13_854 Argininosuccinate lyase (EC 4.3.2.1) 0.90 10
Magnetospirillum magneticum AMB-1 0.21 AMB_RS22725 diaminopimelate decarboxylase 0.41 AMB_RS22715 argininosuccinate lyase — —
Dechlorosoma suillum PS 0.21 Dsui_1182 diaminopimelate decarboxylase 0.44 Dsui_0111 argininosuccinate lyase — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.42 Dshi_3062 argininosuccinate lyase (RefSeq) — —
Pseudomonas simiae WCS417 0.21 PS417_27580 diaminopimelate decarboxylase 0.47 PS417_27540 argininosuccinate lyase — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.47 PFLU_RS29220 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.47 Pf6N2E2_4429 Argininosuccinate lyase (EC 4.3.2.1) — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.47 PFLU_RS29220 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_12740 diaminopimelate decarboxylase 0.47 AO356_12780 argininosuccinate lyase — —
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS19050 diaminopimelate decarboxylase 0.42 RR42_RS15925 argininosuccinate lyase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS16945 diaminopimelate decarboxylase 0.45 AZOBR_RS16935 argininosuccinate lyase — —
Pseudomonas stutzeri RCH2 0.20 Psest_3764 diaminopimelate decarboxylase 0.46 Psest_3751 argininosuccinate lyase — —
Ralstonia sp. UNC404CL21Col 0.20 ABZR87_RS02640 diaminopimelate decarboxylase 0.42 ABZR87_RS16170 argininosuccinate lyase 0.71 30
Rhizobium sp. OAE497 0.20 ABIE40_RS17530 diaminopimelate decarboxylase 0.44 ABIE40_RS17520 argininosuccinate lyase — —
Ralstonia solanacearum PSI07 0.20 RPSI07_RS10250 diaminopimelate decarboxylase 0.41 RPSI07_RS13080 argininosuccinate lyase — —
Pseudomonas sp. S08-1 0.20 OH686_13800 diaminopimelate decarboxylase 0.47 OH686_13885 argininosuccinate lyase low > 80
Agrobacterium fabrum C58 0.20 Atu3601 diaminopimelate decarboxylase 0.44 Atu3599 argininosuccinate lyase — —
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS06990 diaminopimelate decarboxylase 0.42 RALBFv3_RS04280 argininosuccinate lyase — —
Ralstonia solanacearum GMI1000 0.20 RS_RS14930 diaminopimelate decarboxylase 0.42 RS_RS11865 argininosuccinate lyase — —
Shewanella amazonensis SB2B 0.20 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.65 Sama_0260 argininosuccinate lyase (RefSeq) 0.96 16
Ralstonia solanacearum UW163 0.20 UW163_RS06625 diaminopimelate decarboxylase 0.42 UW163_RS09390 argininosuccinate lyase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.43 GFF736 Argininosuccinate lyase (EC 4.3.2.1) — —
Shewanella sp. ANA-3 0.19 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.63 Shewana3_3901 argininosuccinate lyase (RefSeq) 0.90 52
Marinobacter adhaerens HP15 0.19 HP15_247 diaminopimelate decarboxylase 0.47 HP15_243 argininosuccinate lyase — —
Methanococcus maripaludis JJ 0.19 MMJJ_RS08170 diaminopimelate decarboxylase 0.31 MMJJ_RS05395 argininosuccinate lyase — —
Sinorhizobium meliloti 1021 0.19 SMc00723 diaminopimelate DAP decarboxylase 0.44 SMc00725 argininosuccinate lyase — —
Paraburkholderia graminis OAS925 0.19 ABIE53_003749 diaminopimelate decarboxylase 0.42 ABIE53_001311 argininosuccinate lyase — —
Methanococcus maripaludis S2 0.19 MMP_RS06180 diaminopimelate decarboxylase 0.31 MMP_RS00095 argininosuccinate lyase — —
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS28080 diaminopimelate decarboxylase 0.41 QEN71_RS24970 argininosuccinate lyase 0.95 6
Acinetobacter radioresistens SK82 0.19 MPMX26_02232 Diaminopimelate decarboxylase 0.45 MPMX26_00185 Argininosuccinate lyase 0.92 3
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS00950 diaminopimelate decarboxylase 0.43 HSERO_RS14685 argininosuccinate lyase — —
Shewanella oneidensis MR-1 0.19 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.63 SO0279 argH argininosuccinate lyase (NCBI ptt file) 0.96 26
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_02390 diaminopimelate decarboxylase 0.24 CA264_06225 argininosuccinate lyase low > 74
Variovorax sp. SCN45 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.44 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) — —
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_00635 diaminopimelate decarboxylase 0.74 CSW01_13360 argininosuccinate lyase low > 62
Shewanella loihica PV-4 0.18 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.62 Shew_0206 argininosuccinate lyase (RefSeq) 0.98 18
Castellaniella sp019104865 MT123 0.18 ABCV34_RS12685 diaminopimelate decarboxylase 0.44 ABCV34_RS03060 argininosuccinate lyase — —
Paraburkholderia bryophila 376MFSha3.1 0.18 H281DRAFT_05606 diaminopimelate decarboxylase 0.42 H281DRAFT_00194 argininosuccinate lyase — —
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.24 HMPREF1181_RS03410 argininosuccinate lyase 0.98 2
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS09650 diaminopimelate decarboxylase 0.26 CA265_RS18485 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.88 12
Variovorax sp. OAS795 0.18 ABID97_RS23305 diaminopimelate decarboxylase 0.44 ABID97_RS08190 argininosuccinate lyase — —
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS19950 diaminopimelate decarboxylase 0.25 ABI39_RS07095 argininosuccinate lyase 0.64 29
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.25 HMPREF1058_RS09585 argininosuccinate lyase low > 67
Bacteroides ovatus ATCC 8483 0.17 BACOVA_00215 diaminopimelate decarboxylase 0.24 BACOVA_03551 argininosuccinate lyase 0.95 23
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS10180 diaminopimelate decarboxylase 0.25 ABZR88_RS12070 argininosuccinate lyase — —
Alteromonas macleodii MIT1002 0.16 MIT1002_00160 Diaminopimelate decarboxylase 0.57 MIT1002_00467 Argininosuccinate lyase 0.85 15
Mycobacterium tuberculosis H37Rv 0.15 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.31 Rv1659 Probable argininosuccinate lyase ArgH — —
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0262 lysA diaminopimelate decarboxylase 0.42 Synpcc7942_2475 argH argininosuccinate lyase — —

Not shown: 2 genomes with orthologs for b2838 only; 3 genomes with orthologs for b3960 only