| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 1.0 | b3813 | uvrD | DNA-dependent ATPase I and helicase II (NCBI) | 0.61 | 6 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 1.00 | ECOLIN_RS21885 | | DNA helicase II | 0.66 | 26 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 1.00 | JDDGAC_18035 | uvrD | DNA helicase II | low | > 86 |
| Escherichia coli BL21 | 1.00 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 1.00 | ECD_03689 | | DNA-dependent ATPase I and helicase II | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 1.00 | BNILDI_04995 | uvrD | DNA helicase II | low | > 75 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 1.00 | NIAGMN_12165 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 1.00 | MCAODC_04915 | uvrD | DNA helicase II | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02934 | | UvrABC system protein B | 1.00 | OHPLBJKB_04237 | | DNA helicase II | low | > 73 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 1.00 | KEDOAH_13740 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 1.00 | HEPCGN_13115 | uvrD | DNA helicase II | low | > 87 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 1.00 | NOLOHH_06540 | uvrD | DNA helicase II | low | > 75 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 1.00 | OKFHMN_14410 | uvrD | DNA helicase II | low | > 80 |
| Escherichia fergusonii Becca | 1.00 | EFB2_03326 | | UvrABC system protein B | 1.00 | EFB2_04824 | | DNA helicase II | low | > 86 |
| Enterobacter asburiae PDN3 | 0.94 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.97 | EX28DRAFT_4482 | | ATP-dependent DNA helicase UvrD (EC 3.6.1.-) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.94 | MPMX20_01408 | | UvrABC system protein B | 0.97 | MPMX20_04463 | | DNA helicase II | low | > 85 |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.98 | BWI76_RS01220 | | DNA-dependent helicase II | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF675 | | Excinuclease ABC subunit B | 0.99 | GFF241 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.90 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.90 | LU632_RS24125 | uvrD | DNA helicase II | — | — |
| Erwinia amylovora T8 | 0.89 | OLJFJH_16735 | | excinuclease ABC subunit UvrB | 0.89 | OLJFJH_06425 | | DNA helicase II | low | > 58 |
| Pantoea sp. MT58 | 0.89 | IAI47_13505 | | excinuclease ABC subunit B | 0.89 | IAI47_18390 | | DNA helicase II | low | > 76 |
| Serratia liquefaciens MT49 | 0.88 | IAI46_06550 | | excinuclease ABC subunit B | 0.89 | IAI46_00735 | | DNA helicase II | 0.58 | 23 |
| Pectobacterium carotovorum WPP14 | 0.88 | HER17_RS13420 | | excinuclease ABC subunit B | 0.91 | HER17_RS01360 | | DNA helicase II | low | > 75 |
| Rahnella sp. WP5 | 0.87 | EX31_RS23720 | | excinuclease ABC subunit B | 0.87 | EX31_RS15175 | | DNA helicase II | low | > 89 |
| Dickeya dadantii 3937 | 0.87 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.89 | DDA3937_RS19880 | | DNA helicase II | low | > 74 |
| Dickeya dianthicola ME23 | 0.87 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.89 | DZA65_RS21080 | | DNA helicase II | low | > 75 |
| Dickeya dianthicola 67-19 | 0.86 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.89 | HGI48_RS20035 | | DNA helicase II | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.78 | CSW01_05185 | | excinuclease ABC subunit UvrB | 0.71 | CSW01_01015 | | DNA helicase II | 0.52 | 11 |
| Shewanella oneidensis MR-1 | 0.75 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.72 | SO0467 | uvrD | DNA helicase II (NCBI ptt file) | 0.42 | 15 |
| Shewanella sp. ANA-3 | 0.74 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.72 | Shewana3_0469 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.74 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.71 | Sama_0419 | uvrD | DNA-dependent helicase II (RefSeq) | 0.37 | 27 |
| Alteromonas macleodii MIT1002 | 0.74 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.67 | MIT1002_00153 | | DNA helicase II | low | > 70 |
| Shewanella loihica PV-4 | 0.74 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.72 | Shew_3385 | uvrD | DNA-dependent helicase II (RefSeq) | 0.68 | 13 |
| Pseudomonas syringae pv. syringae B728a | 0.71 | Psyr_1974 | | Excinuclease ABC subunit B | 0.61 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.71 | Psyr_1974 | | Excinuclease ABC subunit B | 0.61 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | 0.27 | 34 |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_21335 | | excinuclease ABC subunit B | 0.62 | AO356_11990 | | DNA helicase II | 0.67 | 9 |
| Pseudomonas sp. RS175 | 0.71 | PFR28_02837 | | UvrABC system protein B | 0.62 | PFR28_04523 | | DNA helicase II | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.62 | Pf6N2E2_4273 | | ATP-dependent DNA helicase UvrD/PcrA | 0.59 | 9 |
| Pseudomonas aeruginosa PA14 | 0.71 | IKLFDK_15985 | | excinuclease ABC subunit UvrB | 0.63 | IKLFDK_26200 | | DNA helicase II | low | > 101 |
| Pseudomonas sp. DMC3 | 0.71 | GFF774 | | UvrABC system protein B | 0.63 | GFF512 | | DNA helicase II | low | > 89 |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.61 | Pf1N1B4_2005 | | ATP-dependent DNA helicase UvrD/PcrA | 0.39 | 18 |
| Pseudomonas fluorescens FW300-N2E3 | 0.71 | AO353_20545 | | excinuclease ABC subunit B | 0.62 | AO353_10055 | | DNA helicase II | 0.44 | 22 |
| Pseudomonas sp. SVBP6 | 0.71 | COO64_RS05730 | uvrB | excinuclease ABC subunit UvrB | 0.62 | COO64_RS01845 | uvrD | DNA helicase II | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.70 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.62 | PFLU_RS29900 | | DNA helicase II | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.70 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.62 | PFLU_RS29900 | | DNA helicase II | 0.23 | 101 |
| Pseudomonas sp. BP01 | 0.70 | JOY50_RS16715 | uvrB | excinuclease ABC subunit UvrB | 0.62 | JOY50_RS08735 | uvrD | DNA helicase II | low | > 84 |
| Pseudomonas fluorescens GW456-L13 | 0.70 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.62 | PfGW456L13_724 | | ATP-dependent DNA helicase UvrD/PcrA | 0.26 | 41 |
| Pseudomonas stutzeri RCH2 | 0.70 | Psest_1296 | | excinuclease ABC, B subunit | 0.61 | Psest_4098 | | Superfamily I DNA and RNA helicases | 0.32 | 20 |
| Pseudomonas putida KT2440 | 0.70 | PP_1974 | | excinuclease UvrABC protein B | 0.62 | PP_5352 | | DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex | — | — |
| Kangiella aquimarina DSM 16071 | 0.70 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.61 | B158DRAFT_0238 | | Superfamily I DNA and RNA helicases | 0.70 | 7 |
| Pseudomonas sp. S08-1 | 0.70 | OH686_04580 | | excinuclease ABC subunit B | 0.60 | OH686_13045 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 80 |
| Marinobacter adhaerens HP15 | 0.69 | HP15_1372 | | excinuclease ABC subunit B | 0.59 | HP15_3403 | | UvrD/REP helicase | 0.79 | 9 |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.59 | ABZR86_RS16965 | | DNA helicase II | 0.90 | 5 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.69 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.57 | Xcc-8004.5114.1 | | ATP-dependent DNA helicase UvrD/PcrA | 0.35 | 38 |
| Rhodanobacter sp. FW510-T8 | 0.68 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.60 | OKGIIK_16775 | | DNA helicase | low | > 52 |
| Rhodanobacter sp000427505 FW510-R12 | 0.68 | LRK53_RS14375 | | excinuclease ABC subunit UvrB | 0.58 | LRK53_RS01560 | | UvrD-helicase domain-containing protein | — | — |
| Lysobacter sp. OAE881 | 0.68 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.59 | ABIE51_RS01985 | | DNA helicase II | 0.79 | 21 |
| Rhodanobacter denitrificans MT42 | 0.68 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.59 | LRK55_RS06595 | | DNA helicase II | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.68 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.59 | LRK54_RS06850 | | DNA helicase II | low | > 59 |
| Ralstonia sp. UNC404CL21Col | 0.67 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.42 | ABZR87_RS15705 | | UvrD-helicase domain-containing protein | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.41 | RALBFv3_RS03775 | | DNA-dependent helicase | — | — |
| Dechlorosoma suillum PS | 0.67 | Dsui_2434 | | excinuclease ABC, B subunit | 0.45 | Dsui_1227 | | DNA/RNA helicase, superfamily I | 0.81 | 5 |
| Ralstonia solanacearum UW163 | 0.67 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.41 | UW163_RS09895 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum PSI07 | 0.67 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.41 | RPSI07_RS13455 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum GMI1000 | 0.66 | RS_RS05005 | | UvrABC system protein B | 0.42 | RS_RS11220 | | DNA-dependent helicase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS05995 | | excinuclease ABC subunit B | 0.42 | RR42_RS15090 | | DNA helicase | 0.56 | 10 |
| Paraburkholderia sabiae LMG 24235 | 0.65 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.43 | QEN71_RS05110 | | 3'-5' exonuclease | — | — |
| Burkholderia phytofirmans PsJN | 0.65 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.44 | BPHYT_RS13840 | | DNA-dependent helicase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.65 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.44 | H281DRAFT_04469 | | ATP-dependent DNA helicase UvrD | — | — |
| Paraburkholderia graminis OAS925 | 0.65 | ABIE53_001645 | | excinuclease ABC subunit B | 0.44 | ABIE53_002936 | | DNA helicase-2/ATP-dependent DNA helicase PcrA | — | — |
| Castellaniella sp019104865 MT123 | 0.64 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.41 | ABCV34_RS05210 | | UvrD-helicase domain-containing protein | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.64 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.42 | Ac3H11_1660 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 79 |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.42 | ABID97_RS09150 | | UvrD-helicase domain-containing protein | 0.62 | 15 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.43 | HSERO_RS02160 | | DNA-dependent helicase | 0.39 | 33 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.64 | GFF4962 | | Excinuclease ABC subunit B | 0.41 | GFF5598 | | ATP-dependent DNA helicase UvrD/PcrA | — | — |
| Methylophilus sp. DMC18 | 0.63 | GFF1123 | | UvrABC system protein B | 0.47 | GFF1664 | | DNA helicase II | low | > 43 |
| Variovorax sp. SCN45 | 0.63 | GFF945 | | Excinuclease ABC subunit B | 0.41 | GFF4000 | | ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) | low | > 127 |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.36 | AZOBR_RS12445 | | DNA helicase II | 0.41 | 92 |
| Magnetospirillum magneticum AMB-1 | 0.61 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.35 | AMB_RS03725 | | DNA helicase II | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.59 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.35 | Ga0059261_0249 | | Superfamily I DNA and RNA helicases | 0.93 | 2 |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_01038 | | UvrABC system protein B | 0.36 | MPMX19_01610 | | ATP-dependent DNA helicase PcrA | low | > 112 |
| Rhodospirillum rubrum S1H | 0.59 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.34 | Rru_A1536 | | UvrD/REP helicase (NCBI) | 0.77 | 5 |
| Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.35 | Dshi_2483 | | UvrD/REP helicase (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c26160 | | uvrABC system protein B | 0.35 | PGA1_c09450 | | DNA helicase II UvrD | 0.50 | 14 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.58 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.35 | A4249_RS04960 | | UvrD-helicase domain-containing protein | low | > 48 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.58 | DVU1605 | uvrB | excinuclease ABC, B subunit (TIGR) | 0.21 | DVU0156 | pcrA | ATP-dependent DNA helicase, UvrD/REP family (TIGR) | low | > 55 |
| Parabacteroides merdae CL09T00C40 | 0.57 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | 0.32 | HMPREF1078_RS03560 | | 3'-5' exonuclease | low | > 61 |
| Synechococcus elongatus PCC 7942 | 0.57 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | 0.29 | Synpcc7942_2168 | pcrA | ATP-dependent DNA helicase, Rep family | low | > 38 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.57 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.31 | ABZR88_RS07840 | | ATP-dependent helicase | — | — |
| Synechocystis sp000284455 PCC 6803 | 0.56 | SGL_RS14040 | | excinuclease ABC subunit UvrB | 0.30 | SGL_RS06660 | | DNA helicase PcrA | low | > 51 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.56 | CA265_RS19430 | | excinuclease ABC subunit B | 0.31 | CA265_RS12980 | | ATP-dependent DNA helicase | — | — |
| Fusobacterium nucleatum SB010 | 0.55 | HUW76_02625 | | excinuclease ABC subunit UvrB | 0.29 | HUW76_07175 | | UvrD-helicase domain-containing protein | low | > 35 |
| Cellulophaga baltica 18 | 0.55 | M666_RS19015 | | excinuclease ABC subunit UvrB | 0.32 | M666_RS15390 | | 3'-5' exonuclease | — | — |
| Mycobacterium tuberculosis H37Rv | 0.55 | Rv1633 | | Probable excinuclease ABC (subunit B-helicase) UvrB | 0.32 | Rv0949 | | Probable ATP-dependent DNA helicase II UvrD1 | low | > 58 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.54 | Echvi_1215 | | excinuclease ABC, B subunit | 0.34 | Echvi_0292 | | Superfamily I DNA and RNA helicases | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.53 | CA264_19110 | | excinuclease ABC subunit B | 0.32 | CA264_07795 | | ATP-dependent DNA helicase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.52 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | 0.31 | ABI39_RS17735 | | UvrD-helicase domain-containing protein | — | — |
| Bacteroides stercoris CC31F | 0.52 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | 0.31 | HMPREF1181_RS16505 | | UvrD-helicase domain-containing protein | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.52 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.31 | HMPREF1058_RS03305 | | UvrD-helicase domain-containing protein | 0.70 | 27 |
| Bacteroides ovatus ATCC 8483 | 0.51 | BACOVA_03714 | | excinuclease ABC, B subunit | 0.31 | BACOVA_02365 | | UvrD/REP helicase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.51 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.31 | BT0657 | | ATP-dependent DNA helicase (NCBI ptt file) | — | — |
Not shown: 8 genomes with orthologs for b0779 only; 1 genomes with orthologs for b3813 only