Conservation of cofitness between b4058 and b1913 in Escherichia coli BW25113

103 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4058 uvrA excinuclease ABC subunit A (NCBI) 1.0 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.84 2
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03983 UvrABC system protein A 1.00 OHPLBJKB_01816 UvrABC system protein C low > 73
Escherichia coli ECOR27 1.00 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 1.00 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli ECRC62 1.00 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 1.00 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli ECOR38 1.00 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 1.00 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECRC102 1.00 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 1.00 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC101 1.00 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 1.00 MCAODC_19565 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECRC98 1.00 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 1.00 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC low > 86
Escherichia coli ECRC99 1.00 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 1.00 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia fergusonii Becca 1.00 EFB2_04533 UvrABC system protein A 1.00 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS23485 excinuclease ABC subunit UvrA 1.00 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Escherichia coli BL21 1.00 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 1.00 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.72 10
Escherichia coli ECRC100 1.00 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 1.00 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF1429 Excinuclease ABC subunit A 0.96 GFF1700 Excinuclease ABC subunit C low > 78
Enterobacter sp. TBS_079 0.96 MPMX20_00276 UvrABC system protein A 0.94 MPMX20_02838 UvrABC system protein C 0.55 8
Klebsiella michiganensis M5al 0.96 BWI76_RS01950 excinuclease ABC subunit A 0.94 BWI76_RS18330 excinuclease ABC subunit C 0.45 2
Enterobacter asburiae PDN3 0.96 EX28DRAFT_4246 excinuclease ABC, A subunit 0.94 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Serratia liquefaciens MT49 0.92 IAI46_22905 excinuclease ABC subunit UvrA 0.86 IAI46_09210 excinuclease ABC subunit UvrC 0.45 24
Pantoea sp. MT58 0.91 IAI47_17815 excinuclease ABC subunit UvrA 0.86 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Dickeya dadantii 3937 0.91 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.85 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Erwinia amylovora T8 0.91 OLJFJH_03425 excinuclease ABC subunit UvrA 0.87 OLJFJH_15790 excinuclease ABC subunit UvrC low > 58
Pectobacterium carotovorum WPP14 0.91 HER17_RS03550 excinuclease ABC subunit UvrA 0.87 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Rahnella sp. WP5 0.91 EX31_RS11990 excinuclease ABC subunit UvrA 0.83 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Dickeya dianthicola 67-19 0.91 HGI48_RS17610 excinuclease ABC subunit UvrA 0.86 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Dickeya dianthicola ME23 0.91 DZA65_RS18735 excinuclease ABC subunit UvrA 0.86 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Erwinia tracheiphila SCR3 0.91 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.86 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_02080 UvrABC system protein A 0.65 CSW01_06140 excinuclease ABC subunit C 0.42 26
Shewanella amazonensis SB2B 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.60 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.71 3
Shewanella loihica PV-4 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.58 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.95 1
Shewanella sp. ANA-3 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.58 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Shewanella oneidensis MR-1 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.58 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.72 2
Alteromonas macleodii MIT1002 0.80 MIT1002_00179 Excinuclease ABC subunit A 0.58 MIT1002_02153 Excinuclease ABC subunit C low > 70
Pseudomonas sp. DMC3 0.78 GFF3792 UvrABC system protein A 0.51 GFF3645 UvrABC system protein C low > 89
Pseudomonas aeruginosa PA14 0.78 IKLFDK_21795 excinuclease ABC subunit UvrA 0.52 IKLFDK_12970 excinuclease ABC subunit UvrC low > 101
Pseudomonas sp. RS175 0.78 PFR28_03974 UvrABC system protein A 0.49 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas sp. SVBP6 0.78 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.51 COO64_RS13930 uvrC excinuclease ABC subunit UvrC low > 93
Pseudomonas simiae WCS417 0.78 PS417_25395 excinuclease ABC subunit A 0.51 PS417_10725 excinuclease ABC subunit C 0.56 6
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2611 Excinuclease ABC subunit A 0.51 Pf1N1B4_5618 Excinuclease ABC subunit C 0.58 4
Pseudomonas fluorescens SBW25 0.78 PFLU_RS27025 excinuclease ABC subunit UvrA 0.51 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_4888 Excinuclease ABC subunit A 0.49 Pf6N2E2_2021 Excinuclease ABC subunit C 0.84 2
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_14785 ABC-ATPase UvrA 0.51 AO356_00350 excinuclease ABC subunit C 0.94 2
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS27025 excinuclease ABC subunit UvrA 0.51 PFLU_RS10770 excinuclease ABC subunit UvrC 0.28 52
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_4520 Excinuclease ABC subunit A 0.51 Psyr_2896 Excinuclease ABC subunit C 0.87 2
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_4520 Excinuclease ABC subunit A 0.51 Psyr_2896 Excinuclease ABC subunit C 0.86 2
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_1283 Excinuclease ABC subunit A 0.51 PfGW456L13_2886 Excinuclease ABC subunit C 0.61 3
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_06855 ABC-ATPase UvrA 0.51 AO353_21835 excinuclease ABC subunit C 0.76 2
Pseudomonas sp. BP01 0.78 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.52 JOY50_RS06865 uvrC excinuclease ABC subunit UvrC 0.31 56
Pseudomonas putida KT2440 0.77 PP_0483 excinuclease (uvrABC system protein A) 0.51 PP_4098 UvrABC system protein C — —
Kangiella aquimarina DSM 16071 0.77 B158DRAFT_0885 excinuclease ABC, A subunit 0.48 B158DRAFT_1273 Excinuclease ABC subunit C 0.92 2
Pseudomonas sp. S08-1 0.77 OH686_15495 excinuclease ABC subunit A 0.49 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas stutzeri RCH2 0.76 Psest_3576 excinuclease ABC, A subunit 0.51 Psest_2259 excinuclease ABC, C subunit 0.91 1
Marinobacter adhaerens HP15 0.73 HP15_406 excinuclease ABC, ATPase subunit (A) 0.49 HP15_1568 excinuclease ABC subunit C 0.85 4
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.45 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.50 4
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.48 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.92 3
Rhodanobacter sp000427505 FW510-R12 0.72 LRK53_RS13420 excinuclease ABC subunit UvrA 0.49 LRK53_RS09770 excinuclease ABC subunit UvrC low > 60
Rhodanobacter sp. FW510-T8 0.72 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.48 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Rhodanobacter denitrificans MT42 0.72 LRK55_RS14925 excinuclease ABC subunit UvrA 0.49 LRK55_RS00120 excinuclease ABC subunit UvrC 0.53 35
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS15210 excinuclease ABC subunit UvrA 0.49 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Dechlorosoma suillum PS 0.72 Dsui_1622 excinuclease ABC, A subunit 0.43 Dsui_2470 excinuclease ABC, C subunit 0.87 11
Methylophilus sp. DMC18 0.69 GFF2008 UvrABC system protein A 0.49 GFF496 UvrABC system protein C low > 43
Acinetobacter radioresistens SK82 0.68 MPMX26_02892 UvrABC system protein A 0.41 MPMX26_00228 UvrABC system protein C 0.72 2
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.44 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.56 46
Ralstonia solanacearum GMI1000 0.68 RS_RS02080 excinuclease ABC subunit UvrA 0.43 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS19810 excinuclease ABC subunit A 0.42 HSERO_RS09690 excinuclease ABC subunit C 0.76 2
Ralstonia solanacearum PSI07 0.67 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.43 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.43 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Ralstonia solanacearum UW163 0.67 UW163_RS02345 excinuclease ABC subunit UvrA 0.43 UW163_RS11990 excinuclease ABC subunit UvrC — —
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS02145 excinuclease ABC subunit A 0.42 RR42_RS14000 excinuclease ABC subunit C 0.83 3
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.38 GFF3847 Excinuclease ABC subunit C — —
Variovorax sp. SCN45 0.65 GFF4944 Excinuclease ABC subunit A 0.40 GFF2859 Excinuclease ABC subunit C low > 127
Variovorax sp. OAS795 0.65 ABID97_RS04340 excinuclease ABC subunit UvrA 0.40 ABID97_RS10635 excinuclease ABC subunit UvrC 0.61 5
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4387 Excinuclease ABC subunit A 0.38 Ac3H11_373 Excinuclease ABC subunit C low > 79
Castellaniella sp019104865 MT123 0.61 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.41 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Caulobacter crescentus NA1000 0.61 CCNA_02673 excinuclease ABC subunit A 0.35 CCNA_02975 excinuclease ABC subunit C 0.90 2
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02673 excinuclease ABC subunit A 0.35 CCNA_02975 excinuclease ABC subunit C low > 67
Rhodopseudomonas palustris CGA009 0.60 TX73_014580 excinuclease ABC subunit UvrA 0.35 TX73_006010 excinuclease ABC subunit UvrC 0.96 1
Rhodospirillum rubrum S1H 0.60 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.34 Rru_A2220 Excinuclease ABC, C subunit (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.60 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.36 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.91 1
Azospirillum sp. SherDot2 0.60 MPMX19_01152 UvrABC system protein A 0.34 MPMX19_01070 UvrABC system protein C low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS08575 excinuclease ABC subunit UvrA 0.34 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_0674 excinuclease ABC, A subunit 0.34 Ga0059261_3186 Excinuclease ABC subunit C 0.84 5
Rhizobium sp. OAE497 0.59 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.34 ABIE40_RS06500 excinuclease ABC subunit UvrC — —
Magnetospirillum magneticum AMB-1 0.58 AMB_RS12410 excinuclease ABC subunit UvrA 0.34 AMB_RS19240 UvrABC system protein C low > 64
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.35 PGA1_c02880 uvrABC system protein C 0.81 2
Azospirillum brasilense Sp245 0.58 AZOBR_RS15370 excinuclease ABC subunit A 0.36 AZOBR_RS08965 excinuclease ABC subunit C 0.47 36
Agrobacterium fabrum C58 0.58 Atu1513 ABC excinuclease subunit A 0.35 Atu1129 excinuclease ABC chain C 0.90 1
Sinorhizobium meliloti 1021 0.57 SMc01235 excinuclease ABC subunit A 0.35 SMc00602 excinuclease ABC subunit C 0.85 2
Methanococcus maripaludis JJ 0.55 MMJJ_RS01235 excinuclease ABC subunit UvrA 0.23 MMJJ_RS01240 excinuclease ABC subunit UvrC low > 28
Mycobacterium tuberculosis H37Rv 0.54 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.27 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.26 Synpcc7942_1945 uvrC excinuclease ABC subunit C low > 38
Synechocystis sp000284455 PCC 6803 0.54 SGL_RS06380 excinuclease ABC subunit UvrA 0.28 SGL_RS07280 excinuclease ABC subunit UvrC low > 51
Methanococcus maripaludis S2 0.54 MMP_RS03815 excinuclease ABC subunit UvrA 0.23 MMP_RS03810 excinuclease ABC subunit UvrC low > 25
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.26 HUW76_06695 excinuclease ABC subunit UvrC 0.99 1
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.23 CA264_16350 excinuclease ABC subunit C 0.47 24
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_1138 excinuclease ABC, A subunit 0.25 Echvi_0619 excinuclease ABC, C subunit 0.86 6
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS25080 excinuclease ABC subunit A 0.24 CA265_RS18110 excinuclease ABC subunit C 0.92 3
Cellulophaga baltica 18 0.49 M666_RS15455 excinuclease ABC subunit UvrA 0.26 M666_RS03735 excinuclease ABC subunit UvrC low > 67
Bacteroides thetaiotaomicron VPI-5482 0.49 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.25 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.72 3
Bacteroides ovatus ATCC 8483 0.49 BACOVA_03703 excinuclease ABC, A subunit 0.24 BACOVA_01365 excinuclease ABC, C subunit low > 94
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.24 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS15330 excinuclease ABC subunit UvrA 0.24 ABI39_RS05415 excinuclease ABC subunit UvrC low > 72
Phocaeicola vulgatus CL09T03C04 0.48 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.25 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.87 3
Bacteroides stercoris CC31F 0.48 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.25 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Parabacteroides merdae CL09T00C40 0.48 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.27 HMPREF1078_RS06310 excinuclease ABC subunit UvrC low > 61

Not shown: 9 genomes with orthologs for b4058 only; 1 genomes with orthologs for b1913 only