Homologs of TX73_016160 from Rhodopseudomonas palustris CGA009

ribonuclease R
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodopseudomonas palustris CGA009 TX73_016160 ribonuclease R insig. 100 100
o Rhizobium sp. OAE497 ABIE40_RS07350 ribonuclease R insig. 56 99
o Sinorhizobium meliloti 1021 SMc01365 exoribonuclease II protein sig. 58 96
o Bosea sp. OAE506 ABIE41_RS18140 ribonuclease R insig. 62 91
o Agrobacterium fabrum C58 Atu1303 exoribonuclease sig. 55 99
o Magnetospirillum magneticum AMB-1 AMB_RS04465 ribonuclease R cofit 50 93
o Caulobacter crescentus NA1000 CCNA_02537 ribonuclease R strong 52 92
o Caulobacter crescentus NA1000 Δfur CCNA_02537 ribonuclease R cofit 52 92
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08325 ribonuclease R cofit 49 100
o Phaeobacter inhibens DSM 17395 PGA1_c36430 putative ribonuclease R strong 51 92
o Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 50 92
o Rhodospirillum rubrum S1H Rru_A3203 ribonuclease R (NCBI) cofit 49 98
o Azospirillum sp. SherDot2 MPMX19_01812 Ribonuclease R insig. 50 92
o Dinoroseobacter shibae DFL-12 Dshi_0015 ribonuclease R (RefSeq) insig. 50 92
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3266 ribonuclease R strong 44 91
  Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 37 78
  Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 37 83
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 37 78
  Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 37 78
  Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 38 77
o Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 33 99
o Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 36 81
  Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 39 72
o Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 36 87
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 40 76
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 38 77
  Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 37 79
  Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 37 82
o Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 33 97
  Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 39 77
  Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 37 84
o Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 34 96
o Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 33 99
  Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 38 80
  Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 36 82
  Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 36 82
o Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 34 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 34 96
  Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R cofit 36 82
  Escherichia coli ECRC101 OKFHMN_12220 rnr ribonuclease R insig. 36 82
  Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R insig. 36 82
  Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R insig. 36 82
  Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R insig. 36 82
  Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R no data 36 82
  Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 36 82
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 36 82
o Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 34 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 34 98
  Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 36 82
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 34 97
o Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 34 98
  Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 37 80
  Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R cofit 36 82
  Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 36 82
o Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 35 90
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 33 98
o Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 34 96
o Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 34 91
o Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 36 83
  Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 36 81
o Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 34 90
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 34 90
  Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 36 81
o Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 34 94
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 37 85
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 37 85
  Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 36 81
o Serratia liquefaciens MT49 IAI46_01660 ribonuclease R insig. 35 98
o Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 33 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 33 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 32 98
o Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R cofit 35 81
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 37 83
o Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 33 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 33 92
o Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 33 92
  Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 37 83
o Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 36 84
o Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 32 96
o Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 32 99
  Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 36 72
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 37 81
  Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 34 84
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 34 81
  Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 35 79
  Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 34 79
  Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 33 72
  Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 37 73
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 31 89
  Fusobacterium nucleatum SB010 HUW76_06085 ribonuclease R cofit 32 75
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 33 74
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10530 ribonuclease R strong 31 82
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 31 83
  Bacteroides stercoris CC31F HMPREF1181_RS01550 ribonuclease R insig. 36 59
  Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 32 74
  Bacteroides ovatus ATCC 8483 BACOVA_02736 ribonuclease R strong 35 61
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 32 74
  Bacteroides thetaiotaomicron VPI-5482 BT3077 ribonuclease R (NCBI ptt file) insig. 31 74
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17355 ribonuclease R strong 31 74
  Serratia liquefaciens MT49 IAI46_13870 exoribonuclease II cofit 33 60