Homologs of PP_2247 from Pseudomonas putida KT2440

putative Endoribonuclease
SEED: Bona fide RidA/YjgF/TdcF/RutC subgroup

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_2247 putative Endoribonuclease insig. 100 100
o Pseudomonas sp. BP01 JOY50_RS25415 RidA family protein insig. 95 99
o Pseudomonas aeruginosa MRSN321 DY961_RS01310 RidA family protein sig. 78 99
o Pseudomonas aeruginosa PA14 IKLFDK_15890 enamine deaminase RidA insig. 78 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS34245 RidA family protein insig. 78 99
o Pseudomonas sp. SVBP6 COO64_RS09615 RidA family protein insig. 74 99
o Variovorax sp. OAS795 ABID97_RS22895 RidA family protein insig. 49 86
o Variovorax sp. SCN45 GFF6707 RidA/YER057c/UK114 superfamily protein insig. 49 86
o Acidovorax sp. GW101-3H11 Ac3H11_699 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein insig. 46 88
o Cupriavidus basilensis FW507-4G11 RR42_RS28840 hypothetical protein insig. 42 94
  Cupriavidus basilensis FW507-4G11 RR42_RS34135 hypothetical protein insig. 42 90
o Agrobacterium fabrum C58 Atu3926 translation initiation inhibitor insig. 46 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22825 reactive intermediate/imine deaminase strong 47 87
o Paraburkholderia sabiae LMG 24235 QEN71_RS01965 RidA family protein insig. 42 86
o Paraburkholderia graminis OAS925 ABIE53_000758 reactive intermediate/imine deaminase strong 42 86
  Ralstonia solanacearum GMI1000 RS_RS23530 RidA family protein no data 42 90
o Ralstonia solanacearum GMI1000 RS_RS23660 RidA family protein no data 42 90
o Sinorhizobium meliloti 1021 SM_b21157 translation initiation inhibitor protein insig. 43 86
o Rhizobium sp. OAE497 ABIE40_RS21405 RidA family protein insig. 39 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17245 RidA family protein no data 44 87
o Serratia liquefaciens MT49 IAI46_02310 RidA family protein insig. 42 86
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01890 reactive intermediate/imine deaminase insig. 41 86
o Ralstonia solanacearum PSI07 RPSI07_RS05465 RidA family protein insig. 44 86
o Burkholderia phytofirmans PsJN BPHYT_RS03130 hypothetical protein insig. 41 86
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS18170 RidA family protein no data 44 86
o Ralstonia solanacearum UW163 UW163_RS20960 RidA family protein no data 44 86
  Ralstonia solanacearum GMI1000 RS_RS22865 RidA family protein no data 44 86
  Sinorhizobium meliloti 1021 SM_b21139 translation initiation inhibitors insig. 44 86
o Klebsiella pneumoniae MKP103 KDGMDA_12165 reactive intermediate/imine deaminase insig. 42 86
  Agrobacterium fabrum C58 Atu5232 translation initiation inhibitor no data 43 86
o Herbaspirillum seropedicae SmR1 HSERO_RS08735 hypothetical protein insig. 42 86
  Shewanella oneidensis MR-1 SO1404 endoribonuclease L-PSP, putative (NCBI ptt file) insig. 41 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS19100 RidA family protein strong 41 86
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS12635 RidA family protein insig. 40 86
  Desulfovibrio vulgaris Hildenborough JW710 DVU0620 endoribonuclease, L-PSP family (TIGR) insig. 41 82
o Klebsiella michiganensis M5al BWI76_RS03895 reactive intermediate/imine deaminase insig. 40 86
  Cellulophaga baltica 18 M666_RS12150 RidA family protein insig. 38 86
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18400 RidA family protein strong 46 82
  Methylophilus sp. DMC18 GFF1301 2-iminobutanoate/2-iminopropanoate deaminase cofit 38 86
  Phocaeicola dorei CL03T12C01 ABI39_RS14715 RidA family protein strong 46 82
  Azospirillum brasilense Sp245 AZOBR_RS32435 dfrA insig. 44 82
o Pseudomonas orientalis W4I3 QF045_RS14095 RidA family protein cofit 39 87
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS11845 RidA family protein strong 38 82
  Bacteroides thetaiotaomicron VPI-5482 BT1336 putative translation initiation inhibitor (NCBI ptt file) strong 44 82
o Pseudomonas fluorescens SBW25 PFLU_RS12805 RidA family protein sig. 39 87
o Pseudomonas fluorescens SBW25-INTG PFLU_RS12805 RidA family protein sig. 39 87
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03373 2-iminobutanoate/2-iminopropanoate deaminase cofit 39 87
o Pseudomonas simiae WCS417 PS417_12115 endoribonuclease L-PSP no data 39 87
  Shewanella sp. ANA-3 Shewana3_2971 putative endoribonuclease L-PSP (RefSeq) sig. 39 94
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1205.1 hypothetical protein cofit 38 82
  Bacteroides ovatus ATCC 8483 BACOVA_00589 putative endoribonuclease L-PSP cofit 43 82
  Desulfovibrio vulgaris Hildenborough JW710 DVU2203 endoribonuclease, L-PSP family (TIGR) sig. 38 82
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1327 endoribonuclease L-PSP, putative sig. 38 93
  Cupriavidus basilensis FW507-4G11 RR42_RS16710 endoribonuclease L-PSP insig. 40 94
  Rhodanobacter sp. FW510-T8 OKGIIK_12095 ridA reactive intermediate/imine deaminase strong 38 82
o Pseudomonas sp. RS175 PFR28_01387 2-iminobutanoate/2-iminopropanoate deaminase insig. 38 87
  Bacteroides stercoris CC31F HMPREF1181_RS10885 RidA family protein strong 38 90
  Sinorhizobium meliloti 1021 SM_b21439 translation initiation inhibitor protein insig. 39 87
o Pseudomonas fluorescens FW300-N2C3 AO356_00460 reactive intermediate/imine deaminase no data 37 87
o Pseudomonas sp. DMC3 GFF3667 2-iminobutanoate/2-iminopropanoate deaminase no data 37 87
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2049 Bona fide RidA/YjgF/TdcF/RutC subgroup no data 37 87
  Fusobacterium nucleatum SB010 HUW76_10065 RidA family protein strong 37 83
  Ralstonia solanacearum PSI07 RPSI07_RS06815 RidA family protein insig. 37 87
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01145 Putative aminoacrylate peracid reductase RutC cofit 41 91
  Rhodanobacter denitrificans MT42 LRK55_RS11525 RidA family protein cofit 37 82
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11800 RidA family protein strong 37 82
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_5641 Bona fide RidA/YjgF/TdcF/RutC subgroup no data 37 87
  Escherichia coli BL21 ECD_02980 putative reactive intermediate deaminase insig. 35 94
  Escherichia fergusonii Becca EFB2_00701 Putative reactive intermediate deaminase TdcF insig. 35 94
  Escherichia coli ECOR27 NOLOHH_10200 tdcF enamine/imine deaminase insig. 35 94
  Escherichia coli ECOR38 HEPCGN_17255 tdcF enamine/imine deaminase insig. 35 94
  Escherichia coli ECRC100 OKFHMN_18420 tdcF enamine/imine deaminase insig. 35 94
  Escherichia coli ECRC101 MCAODC_08935 tdcF enamine/imine deaminase insig. 35 94
  Escherichia coli ECRC102 NIAGMN_16185 tdcF enamine/imine deaminase insig. 35 94
  Escherichia coli ECRC62 BNILDI_01325 tdcF enamine/imine deaminase insig. 35 94
  Escherichia coli ECRC98 JDDGAC_22055 tdcF enamine/imine deaminase insig. 35 94
  Escherichia coli ECRC99 KEDOAH_09725 tdcF enamine/imine deaminase no data 35 94
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00587 Putative reactive intermediate deaminase TdcF insig. 35 94
  Escherichia coli Nissle 1917 ECOLIN_RS17920 enamine/imine deaminase insig. 35 94
  Escherichia coli BW25113 b3113 yhaR orf, hypothetical protein (VIMSS) strong 35 94
  Lysobacter sp. OAE881 ABIE51_RS17260 RidA family protein strong 38 82
o Pseudomonas fluorescens FW300-N2E3 AO353_21730 reactive intermediate/imine deaminase no data 37 87
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1670 Putative translation initiation inhibitor, yjgF family insig. 34 90
o Pseudomonas syringae pv. syringae B728a Psyr_2507 Endoribonuclease L-PSP sig. 37 87
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2507 Endoribonuclease L-PSP insig. 37 87
  Desulfovibrio vulgaris Miyazaki F DvMF_1512 endoribonuclease L-PSP (RefSeq) no data 43 82
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2865 Bona fide RidA/YjgF/TdcF/RutC subgroup no data 37 87
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS16740 RidA family protein strong 35 87
  Marinobacter adhaerens HP15 HP15_306 YjgF-like protein strong 36 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_931 Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) insig. 40 90
  Pectobacterium carotovorum WPP14 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase sig. 36 86
  Desulfovibrio vulgaris Hildenborough JW710 DVU2647 endoribonuclease, L-PSP family (TIGR) sig. 35 82
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS16635 RidA family protein insig. 37 87
  Ralstonia solanacearum UW163 UW163_RS17990 RidA family protein insig. 37 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS38550 RidA family protein insig. 34 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS41190 RidA family protein no data 40 82
  Sinorhizobium meliloti 1021 SMa2289 hypothetical protein insig. 36 90
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_179 Endoribonuclease L-PSP no data 37 82
  Ralstonia solanacearum GMI1000 RS_RS24425 RidA family protein insig. 35 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02020 RidA family protein insig. 42 85