Homologs of LRK55_RS13455 from Rhodanobacter denitrificans MT42

rRNA maturation RNase YbeY
SEED: Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly
KEGG: probable rRNA maturation factor

97 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodanobacter denitrificans MT42 LRK55_RS13455 rRNA maturation RNase YbeY no data 100 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS13715 rRNA maturation RNase YbeY no data 95 100
o Rhodanobacter sp. FW510-T8 OKGIIK_02960 ybeY rRNA maturation RNase YbeY no data 91 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS09925 rRNA maturation RNase YbeY no data 86 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2221.1 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 65 97
o Lysobacter sp. OAE881 ABIE51_RS15505 rRNA maturation RNase YbeY no data 66 97
o Pectobacterium carotovorum WPP14 HER17_RS15175 rRNA maturation RNase YbeY no data 63 89
o Dickeya dianthicola ME23 DZA65_RS06630 rRNA maturation RNase YbeY no data 61 89
o Dickeya dadantii 3937 DDA3937_RS06240 rRNA maturation RNase YbeY no data 59 90
o Dickeya dianthicola 67-19 HGI48_RS06285 rRNA maturation RNase YbeY no data 60 89
o Pseudomonas fluorescens FW300-N2E3 AO353_06385 rRNA maturation factor no data 62 88
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2710 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 59 91
o Serratia liquefaciens MT49 IAI46_06010 rRNA maturation RNase YbeY no data 59 89
o Erwinia tracheiphila SCR3 LU632_RS16315 ybeY rRNA maturation RNase YbeY no data 57 91
o Pseudomonas fluorescens SBW25 PFLU_RS26565 rRNA maturation RNase YbeY insig. 60 88
o Pseudomonas fluorescens SBW25-INTG PFLU_RS26565 rRNA maturation RNase YbeY insig. 60 88
o Pseudomonas simiae WCS417 PS417_24635 rRNA maturation factor no data 60 88
o Enterobacter asburiae PDN3 EX28DRAFT_2312 probable rRNA maturation factor YbeY no data 54 90
o Pantoea sp. MT58 IAI47_13955 rRNA maturation RNase YbeY no data 57 90
o Alteromonas macleodii MIT1002 MIT1002_01478 Endoribonuclease YbeY no data 54 90
o Shewanella amazonensis SB2B Sama_2577 putative metalloprotease (RefSeq) no data 60 99
o Enterobacter sp. TBS_079 MPMX20_01309 Endoribonuclease YbeY no data 55 90
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4576 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 55 90
o Shewanella loihica PV-4 Shew_2925 putative metalloprotease (RefSeq) no data 52 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5016 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 63 88
o Vibrio cholerae E7946 ATCC 55056 CSW01_04905 endoribonuclease YbeY no data 55 89
o Pseudomonas fluorescens FW300-N2C3 AO356_15400 rRNA maturation factor no data 63 88
o Pseudomonas sp. RS175 PFR28_03850 Endoribonuclease YbeY no data 64 88
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1378 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 60 91
o Shewanella sp. ANA-3 Shewana3_1006 putative metalloprotease (RefSeq) no data 55 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0097 metalloprotein, YbeY/UPF0054 family no data 48 99
o Dechlorosoma suillum PS Dsui_1196 metalloprotein, YbeY/UPF0054 family no data 61 99
o Shewanella oneidensis MR-1 SO1179 conserved hypothetical protein TIGR00043 (NCBI ptt file) no data 55 99
o Escherichia coli BL21 ECD_00627 ssRNA-specific endoribonuclease; 16S rRNA 3 no data 55 90
o Pseudomonas putida KT2440 PP_4788 Endoribonuclease YbeY no data 61 90
o Pseudomonas stutzeri RCH2 Psest_0530 metalloprotein, YbeY/UPF0054 family no data 61 88
o Escherichia coli ECRC62 BNILDI_21620 ybeY rRNA maturation RNase YbeY no data 55 90
o Escherichia coli ECOR27 NOLOHH_23615 ybeY rRNA maturation RNase YbeY no data 55 90
o Escherichia coli ECOR38 HEPCGN_00995 ybeY rRNA maturation RNase YbeY no data 55 90
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03053 Endoribonuclease YbeY no data 55 90
o Escherichia coli BW25113 b0659 ybeY hypothetical protein (NCBI) no data 55 90
o Escherichia fergusonii Becca EFB2_03440 Endoribonuclease YbeY no data 54 90
o Escherichia coli Nissle 1917 ECOLIN_RS03545 rRNA maturation RNase YbeY no data 54 90
o Pseudomonas sp. S08-1 OH686_09225 probable rRNA maturation factor YbeY no data 58 97
o Escherichia coli ECRC101 OKFHMN_07235 ybeY rRNA maturation RNase YbeY no data 54 90
o Escherichia coli ECRC101 MCAODC_26450 ybeY rRNA maturation RNase YbeY no data 54 90
o Escherichia coli ECRC102 NIAGMN_05290 ybeY rRNA maturation RNase YbeY no data 54 90
o Escherichia coli ECRC98 JDDGAC_10880 ybeY rRNA maturation RNase YbeY no data 54 90
o Escherichia coli ECRC99 KEDOAH_20735 ybeY rRNA maturation RNase YbeY no data 54 90
o Pseudomonas syringae pv. syringae B728a Psyr_4347 Protein of unknown function UPF0054 no data 58 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4347 Protein of unknown function UPF0054 no data 58 88
o Rahnella sp. WP5 EX31_RS23190 rRNA maturation RNase YbeY no data 55 90
o Acinetobacter radioresistens SK82 MPMX26_02669 Endoribonuclease YbeY no data 46 99
o Klebsiella michiganensis M5al BWI76_RS08125 rRNA maturation RNase YbeY no data 55 90
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11815 rRNA maturation RNAse YbeY no data 48 93
  Ralstonia solanacearum UW163 UW163_RS01770 rRNA maturation RNAse YbeY no data 48 93
o Castellaniella sp019104865 MT123 ABCV34_RS15335 rRNA maturation RNase YbeY no data 51 100
o Acidovorax sp. GW101-3H11 Ac3H11_4681 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 52 93
o Variovorax sp. SCN45 GFF2071 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 53 90
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1669 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly no data 55 84
  Ralstonia solanacearum GMI1000 RS_RS02635 rRNA maturation RNase YbeY no data 49 88
  Ralstonia solanacearum PSI07 RPSI07_RS21390 rRNA maturation RNase YbeY no data 46 93
o Variovorax sp. OAS795 ABID97_RS24930 rRNA maturation RNase YbeY no data 53 90
  Ralstonia sp. UNC404CL21Col ABZR87_RS07770 rRNA maturation RNase YbeY no data 44 97
o Caulobacter crescentus NA1000 CCNA_00052 metal-dependent hydrolase/metalloproteinase no data 52 88
o Caulobacter crescentus NA1000 Δfur CCNA_00052 metal-dependent hydrolase/metalloproteinase no data 52 88
o Herbaspirillum seropedicae SmR1 HSERO_RS03605 16S rRNA maturation RNase YbeY no data 50 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS02185 rRNA maturation RNase YbeY no data 50 99
o Rhizobium sp. OAE497 ABIE40_RS01695 rRNA maturation RNase YbeY no data 52 75
  Azospirillum sp. SherDot2 MPMX19_02513 Endoribonuclease YbeY no data 55 74
  Bosea sp. OAE506 ABIE41_RS04505 rRNA maturation RNase YbeY no data 53 75
  Burkholderia phytofirmans PsJN BPHYT_RS16545 endoribonuclease YbeY no data 56 82
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04241 probable rRNA maturation factor no data 54 86
  Paraburkholderia graminis OAS925 ABIE53_003481 putative rRNA maturation factor no data 56 82
  Sinorhizobium meliloti 1021 SMc01113 hypothetical protein no data 53 73
  Rhodospirillum rubrum S1H Rru_A3772 Protein of unknown function UPF0054 (NCBI) no data 54 78
  Cupriavidus basilensis FW507-4G11 RR42_RS02845 16S rRNA maturation RNase YbeY no data 46 99
o Rhodopseudomonas palustris CGA009 TX73_002315 rRNA maturation RNase YbeY strong 48 91
  Agrobacterium fabrum C58 Atu0358 hypothetical protein no data 54 73
  Marinobacter adhaerens HP15 HP15_2468 metalloprotease YbeY no data 51 59
  Magnetospirillum magneticum AMB-1 AMB_RS22595 endoribonuclease YbeY no data 52 73
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1609 probable rRNA maturation factor YbeY no data 46 73
  Dinoroseobacter shibae DFL-12 Dshi_1015 protein of unknown function UPF0054 (RefSeq) no data 47 71
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14710 rRNA maturation RNase YbeY no data 50 82
  Phaeobacter inhibens DSM 17395 PGA1_c04750 metalloprotein, YbeY/UPF0054 family no data 45 74
  Fusobacterium nucleatum SB010 HUW76_04575 rRNA maturation RNase YbeY no data 32 73
o Synechococcus elongatus PCC 7942 Synpcc7942_0402 hypothetical protein insig. 35 96
  Bifidobacterium breve UCC2003 BBR_RS15165 rRNA maturation RNase YbeY no data 36 76
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11550 rRNA maturation RNase YbeY no data 34 77
  Mycobacterium tuberculosis H37Rv Rv2367c Conserved hypothetical protein insig. 42 50
  Phocaeicola dorei CL03T12C01 ABI39_RS05390 rRNA maturation RNase YbeY no data 33 77
  Bacteroides ovatus ATCC 8483 BACOVA_00893 translation metalloprotein YbeY no data 27 90
  Bacteroides stercoris CC31F HMPREF1181_RS02110 rRNA maturation RNase YbeY no data 32 84
  Bacteroides thetaiotaomicron VPI-5482 BT3283 conserved hypothetical protein with conserved domain (NCBI ptt file) no data 28 90
  Desulfovibrio vulgaris Hildenborough JW710 DVU1883 conserved hypothetical protein (TIGR) no data 32 65
  Marinobacter adhaerens HP15 HP15_2469 predicted metal-dependent hydrolase insig. 60 23
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06270 rRNA maturation RNase YbeY no data 27 90