Homologs of Ga0059261_2150 from Sphingomonas koreensis DSMZ 15582

Uncharacterized protein conserved in bacteria
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2150 Uncharacterized protein conserved in bacteria no data 100 100
o Caulobacter crescentus NA1000 CCNA_00044 ribosome maturation protein RimP strong 49 86
o Caulobacter crescentus NA1000 Δfur CCNA_00044 ribosome maturation protein RimP cofit 49 86
o Phaeobacter inhibens DSM 17395 PGA1_c34650 UPF0090 protein YhbC strong 46 95
o Magnetospirillum magneticum AMB-1 AMB_RS20595 ribosome maturation factor cofit 48 87
o Azospirillum brasilense Sp245 AZOBR_RS01420 ribosome maturation factor RimP no data 49 88
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13990 ribosome maturation factor RimP no data 48 86
  Dinoroseobacter shibae DFL-12 Dshi_3560 protein of unknown function DUF150 (RefSeq) no data 48 86
o Azospirillum sp. SherDot2 MPMX19_02519 Ribosome maturation factor RimP no data 51 82
  Bosea sp. OAE506 ABIE41_RS04540 ribosome maturation factor RimP no data 42 96
  Rhodopseudomonas palustris CGA009 TX73_002280 ribosome maturation factor RimP sig. 45 87
o Agrobacterium fabrum C58 Atu0090 hypothetical protein no data 41 86
  Sinorhizobium meliloti 1021 SMc02911 hypothetical protein no data 41 84
  Rhodospirillum rubrum S1H Rru_A3778 Protein of unknown function DUF150 (NCBI) no data 41 96
o Rhizobium sp. OAE497 ABIE40_RS00320 ribosome maturation factor RimP no data 39 86
  Vibrio cholerae E7946 ATCC 55056 CSW01_03380 ribosome maturation factor RimP no data 35 73
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2000.1 FIG000325: clustered with transcription termination protein NusA no data 36 82
o Escherichia coli BL21 ECD_03037 ribosome maturation factor for 30S subunits strong 36 82
o Escherichia fergusonii Becca EFB2_00653 Ribosome maturation factor RimP no data 36 82
o Escherichia coli ECOR27 NOLOHH_09900 rimP ribosome maturation factor RimP no data 36 82
o Escherichia coli ECOR38 HEPCGN_16975 rimP ribosome maturation factor RimP no data 36 82
o Escherichia coli ECRC101 OKFHMN_18100 rimP ribosome maturation factor RimP no data 36 82
o Escherichia coli ECRC101 MCAODC_08620 rimP ribosome maturation factor RimP no data 36 82
o Escherichia coli ECRC102 NIAGMN_15860 rimP ribosome maturation factor RimP no data 36 82
o Escherichia coli ECRC62 BNILDI_01635 rimP ribosome maturation factor RimP no data 36 82
o Escherichia coli ECRC98 JDDGAC_21725 rimP ribosome maturation factor RimP no data 36 82
o Escherichia coli ECRC99 KEDOAH_10050 rimP ribosome maturation factor RimP no data 36 82
  Escherichia coli Nissle 1917 ECOLIN_RS18205 ribosome maturation factor RimP no data 36 82
  Escherichia coli Nissle 1917 ECOLIN_RS18225 ribosome maturation factor RimP no data 36 82
  Escherichia coli Nissle 1917 ECOLIN_RS18245 ribosome maturation factor RimP no data 36 82
o Escherichia coli Nissle 1917 ECOLIN_RS18265 ribosome maturation factor RimP no data 36 82
o Escherichia coli BW25113 b3170 rimP conserved protein (RefSeq) no data 36 82
o Marinobacter adhaerens HP15 HP15_3069 protein belonging to uncharacterized protein family UPF0090 no data 34 85
o Alteromonas macleodii MIT1002 MIT1002_01769 Ribosome maturation factor RimP no data 38 83
o Dickeya dadantii 3937 DDA3937_RS03060 ribosome maturation factor RimP no data 36 82
o Klebsiella michiganensis M5al BWI76_RS25100 ribosome maturation factor no data 35 82
o Rahnella sp. WP5 EX31_RS08550 ribosome maturation factor RimP no data 36 82
o Enterobacter asburiae PDN3 EX28DRAFT_3221 Uncharacterized protein conserved in bacteria no data 35 82
o Enterobacter sp. TBS_079 MPMX20_04075 Ribosome maturation factor RimP no data 35 82
o Dickeya dianthicola 67-19 HGI48_RS03230 ribosome maturation factor RimP no data 36 82
o Dickeya dianthicola ME23 DZA65_RS03225 ribosome maturation factor RimP no data 36 82
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00530 Ribosome maturation factor RimP no data 36 81
o Erwinia tracheiphila SCR3 LU632_RS21070 rimP ribosome maturation factor RimP no data 36 82
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1496 FIG000325: clustered with transcription termination protein NusA no data 34 81
o Serratia liquefaciens MT49 IAI46_01925 ribosome maturation factor RimP no data 34 82
o Pectobacterium carotovorum WPP14 HER17_RS18220 ribosome maturation factor RimP no data 35 82
o Pantoea sp. MT58 IAI47_17035 ribosome maturation factor RimP sig. 33 82
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06035 ribosome maturation factor RimP no data 36 76
  Lysobacter sp. OAE881 ABIE51_RS08385 ribosome maturation factor RimP no data 32 82
  Shewanella loihica PV-4 Shew_2829 hypothetical protein (RefSeq) no data 37 70
o Paraburkholderia sabiae LMG 24235 QEN71_RS23110 ribosome maturation factor RimP sig. 38 82
  Rhodanobacter sp. FW510-T8 OKGIIK_05840 rimP ribosome maturation protein RimP no data 35 76
o Kangiella aquimarina DSM 16071 B158DRAFT_0112 Uncharacterized protein conserved in bacteria strong 30 83
  Paraburkholderia graminis OAS925 ABIE53_001828 ribosome maturation factor RimP sig. 39 71
  Rhodanobacter denitrificans MT42 LRK55_RS00830 ribosome maturation factor RimP no data 34 76
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01055 ribosome maturation factor RimP no data 34 76
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05102 ribosome maturation factor RimP sig. 38 71
o Burkholderia phytofirmans PsJN BPHYT_RS08060 ribosome maturation factor RimP strong 37 82
  Shewanella amazonensis SB2B Sama_0959 hypothetical protein (RefSeq) no data 33 76
  Shewanella oneidensis MR-1 SO1202 conserved hypothetical protein (NCBI ptt file) no data 31 71
  Shewanella sp. ANA-3 Shewana3_1028 hypothetical protein (RefSeq) no data 31 71
  Pseudomonas sp. RS175 PFR28_00088 Ribosome maturation factor RimP no data 38 66
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3355 FIG000325: clustered with transcription termination protein NusA no data 38 66
o Pseudomonas stutzeri RCH2 Psest_0979 Uncharacterized protein conserved in bacteria no data 32 82
  Pseudomonas sp. S08-1 OH686_17135 Bacterial ribosome SSU maturation protein RimP no data 32 73
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5090 FIG000325: clustered with transcription termination protein NusA no data 37 66
  Pseudomonas fluorescens FW300-N2C3 AO356_07420 ribosome maturation protein RimP no data 38 66
  Pseudomonas fluorescens FW300-N2E3 AO353_05570 ribosome maturation protein RimP no data 38 66
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1163 FIG000325: clustered with transcription termination protein NusA no data 36 66
  Fusobacterium nucleatum SB010 HUW76_01020 ribosome maturation factor RimP strong 29 71
  Pseudomonas fluorescens SBW25 PFLU_RS25820 ribosome maturation factor RimP no data 36 66
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25820 ribosome maturation factor RimP no data 36 66
  Pseudomonas syringae pv. syringae B728a Psyr_4182 Protein of unknown function DUF150 no data 34 69
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4182 Protein of unknown function DUF150 no data 34 69
  Pseudomonas simiae WCS417 PS417_23980 ribosome maturation protein RimP no data 36 66
  Cupriavidus basilensis FW507-4G11 RR42_RS12855 ribosome maturation protein RimP no data 37 69
  Ralstonia solanacearum PSI07 RPSI07_RS17685 ribosome maturation factor RimP no data 37 69
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15670 ribosome maturation factor RimP no data 37 69
  Ralstonia solanacearum UW163 UW163_RS13130 ribosome maturation factor RimP no data 37 69
o Pseudomonas putida KT2440 PP_4714 ribosome maturation factor no data 33 66
  Dechlorosoma suillum PS Dsui_2724 hypothetical protein no data 33 71
  Ralstonia solanacearum GMI1000 RS_RS06450 ribosome maturation factor no data 37 69
  Desulfovibrio vulgaris Hildenborough JW710 DVU0511 conserved hypothetical protein (TIGR) insig. 32 72
  Ralstonia sp. UNC404CL21Col ABZR87_RS11200 ribosome maturation factor RimP no data 37 69
  Castellaniella sp019104865 MT123 ABCV34_RS02115 ribosome maturation factor RimP no data 35 62
  Acinetobacter radioresistens SK82 MPMX26_00252 Ribosome maturation factor RimP strong 28 69
  Desulfovibrio vulgaris Miyazaki F DvMF_2516 protein of unknown function DUF150 (RefSeq) sig. 40 47
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0707 Uncharacterized protein conserved in bacteria no data 46 35
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS03080 ribosome assembly cofactor RimP no data 34 60
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14455 ribosome maturation factor strong 34 61
  Mycobacterium tuberculosis H37Rv Rv2842c Conserved protein no data 36 58
  Variovorax sp. SCN45 GFF224 Bacterial ribosome SSU maturation protein RimP no data 32 66
o Herbaspirillum seropedicae SmR1 HSERO_RS18005 ribosome maturation protein RimP no data 29 82
  Variovorax sp. OAS795 ABID97_RS16495 ribosome maturation factor RimP no data 32 66
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4341 FIG000325: clustered with transcription termination protein NusA strong 32 66
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22730 ribosome assembly cofactor RimP no data 28 61
  Synechococcus elongatus PCC 7942 Synpcc7942_2023 hypothetical protein strong 26 84
  Acidovorax sp. GW101-3H11 Ac3H11_2869 FIG000325: clustered with transcription termination protein NusA no data 36 43
  Phocaeicola dorei CL03T12C01 ABI39_RS04610 ribosome assembly cofactor RimP no data 31 55
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12185 ribosome assembly cofactor RimP no data 31 55