Homologs of PGA1_c34650 from Phaeobacter inhibens DSM 17395

UPF0090 protein YhbC
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

100 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Phaeobacter inhibens DSM 17395	PGA1_c34650		UPF0090 protein YhbC	strong	100	100
o	Dinoroseobacter shibae DFL-12	Dshi_3560		protein of unknown function DUF150 (RefSeq)	no data	72	97
o	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS13990		ribosome maturation factor RimP	no data	54	93
o	Agrobacterium fabrum C58	Atu0090		hypothetical protein	no data	48	94
o	Caulobacter crescentus NA1000	CCNA_00044		ribosome maturation protein RimP	strong	52	86
o	Caulobacter crescentus NA1000 Δfur	CCNA_00044		ribosome maturation protein RimP	cofit	52	86
	Azospirillum brasilense Sp245	AZOBR_RS01420		ribosome maturation factor RimP	no data	57	78
o	Bosea sp. OAE506	ABIE41_RS04540		ribosome maturation factor RimP	no data	45	97
o	Sinorhizobium meliloti 1021	SMc02911		hypothetical protein	no data	46	83
o	Rhizobium sp. OAE497	ABIE40_RS00320		ribosome maturation factor RimP	no data	48	85
o	Magnetospirillum magneticum AMB-1	AMB_RS20595		ribosome maturation factor	cofit	52	82
	Azospirillum sp. SherDot2	MPMX19_02519		Ribosome maturation factor RimP	no data	55	72
o	Sphingomonas koreensis DSMZ 15582	Ga0059261_2150		Uncharacterized protein conserved in bacteria	no data	46	89
	Rhodopseudomonas palustris CGA009	TX73_002280		ribosome maturation factor RimP	sig.	43	87
o	Rhodospirillum rubrum S1H	Rru_A3778		Protein of unknown function DUF150 (NCBI)	no data	42	89
	Escherichia coli BL21	ECD_03037		ribosome maturation factor for 30S subunits	strong	44	66
	Escherichia fergusonii Becca	EFB2_00653		Ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECOR27	NOLOHH_09900	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECOR38	HEPCGN_16975	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECRC101	OKFHMN_18100	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECRC101	MCAODC_08620	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECRC102	NIAGMN_15860	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECRC62	BNILDI_01635	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECRC98	JDDGAC_21725	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli ECRC99	KEDOAH_10050	rimP	ribosome maturation factor RimP	no data	44	66
	Escherichia coli Nissle 1917	ECOLIN_RS18205		ribosome maturation factor RimP	no data	44	66
	Escherichia coli Nissle 1917	ECOLIN_RS18225		ribosome maturation factor RimP	no data	44	66
	Escherichia coli Nissle 1917	ECOLIN_RS18245		ribosome maturation factor RimP	no data	44	66
	Escherichia coli Nissle 1917	ECOLIN_RS18265		ribosome maturation factor RimP	no data	44	66
	Escherichia coli BW25113	b3170	rimP	conserved protein (RefSeq)	no data	44	66
	Klebsiella michiganensis M5al	BWI76_RS25100		ribosome maturation factor	no data	40	71
	Rahnella sp. WP5	EX31_RS08550		ribosome maturation factor RimP	no data	40	71
	Enterobacter asburiae PDN3	EX28DRAFT_3221		Uncharacterized protein conserved in bacteria	no data	42	66
	Enterobacter sp. TBS_079	MPMX20_04075		Ribosome maturation factor RimP	no data	42	66
	Marinobacter adhaerens HP15	HP15_3069		protein belonging to uncharacterized protein family UPF0090	no data	42	75
	Dickeya dadantii 3937	DDA3937_RS03060		ribosome maturation factor RimP	no data	42	66
	Dickeya dianthicola 67-19	HGI48_RS03230		ribosome maturation factor RimP	no data	42	66
	Dickeya dianthicola ME23	DZA65_RS03225		ribosome maturation factor RimP	no data	42	66
	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_00530		Ribosome maturation factor RimP	no data	45	62
	Pantoea sp. MT58	IAI47_17035		ribosome maturation factor RimP	sig.	39	66
	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF1496		FIG000325: clustered with transcription termination protein NusA	no data	42	66
	Erwinia tracheiphila SCR3	LU632_RS21070	rimP	ribosome maturation factor RimP	no data	40	71
	Serratia liquefaciens MT49	IAI46_01925		ribosome maturation factor RimP	no data	37	71
	Pseudomonas sp. S08-1	OH686_17135		Bacterial ribosome SSU maturation protein RimP	no data	41	69
	Pectobacterium carotovorum WPP14	HER17_RS18220		ribosome maturation factor RimP	no data	40	66
	Alteromonas macleodii MIT1002	MIT1002_01769		Ribosome maturation factor RimP	no data	42	71
	Shewanella amazonensis SB2B	Sama_0959		hypothetical protein (RefSeq)	no data	39	71
	Vibrio cholerae E7946 ATCC 55056	CSW01_03380		ribosome maturation factor RimP	no data	40	66
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.2000.1		FIG000325: clustered with transcription termination protein NusA	no data	41	68
	Pseudomonas putida KT2440	PP_4714		ribosome maturation factor	no data	47	58
	Kangiella aquimarina DSM 16071	B158DRAFT_0112		Uncharacterized protein conserved in bacteria	strong	45	59
	Pseudomonas stutzeri RCH2	Psest_0979		Uncharacterized protein conserved in bacteria	no data	38	69
	Shewanella oneidensis MR-1	SO1202		conserved hypothetical protein (NCBI ptt file)	no data	37	71
	Pseudomonas fluorescens FW300-N2C3	AO356_07420		ribosome maturation protein RimP	no data	43	58
	Desulfovibrio vulgaris Hildenborough JW710	DVU0511		conserved hypothetical protein (TIGR)	insig.	39	68
	Shewanella sp. ANA-3	Shewana3_1028		hypothetical protein (RefSeq)	no data	37	71
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_3355		FIG000325: clustered with transcription termination protein NusA	no data	43	58
	Pseudomonas sp. RS175	PFR28_00088		Ribosome maturation factor RimP	no data	43	58
	Pseudomonas syringae pv. syringae B728a	Psyr_4182		Protein of unknown function DUF150	no data	43	58
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_4182		Protein of unknown function DUF150	no data	43	58
	Pseudomonas fluorescens GW456-L13	PfGW456L13_5090		FIG000325: clustered with transcription termination protein NusA	no data	44	58
	Pseudomonas fluorescens FW300-N2E3	AO353_05570		ribosome maturation protein RimP	no data	43	58
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_1163		FIG000325: clustered with transcription termination protein NusA	no data	43	58
	Shewanella loihica PV-4	Shew_2829		hypothetical protein (RefSeq)	no data	36	68
	Pseudomonas simiae WCS417	PS417_23980		ribosome maturation protein RimP	no data	43	58
	Pseudomonas fluorescens SBW25	PFLU_RS25820		ribosome maturation factor RimP	no data	43	58
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS25820		ribosome maturation factor RimP	no data	43	58
	Lysobacter sp. OAE881	ABIE51_RS08385		ribosome maturation factor RimP	no data	37	74
	Acinetobacter radioresistens SK82	MPMX26_00252		Ribosome maturation factor RimP	strong	33	66
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS06035		ribosome maturation factor RimP	no data	38	66
	Dechlorosoma suillum PS	Dsui_2724		hypothetical protein	no data	37	63
	Rhodanobacter denitrificans MT42	LRK55_RS00830		ribosome maturation factor RimP	no data	35	71
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS01055		ribosome maturation factor RimP	no data	35	71
	Paraburkholderia sabiae LMG 24235	QEN71_RS23110		ribosome maturation factor RimP	sig.	36	74
	Rhodanobacter sp. FW510-T8	OKGIIK_05840	rimP	ribosome maturation protein RimP	no data	38	63
	Paraburkholderia graminis OAS925	ABIE53_001828		ribosome maturation factor RimP	sig.	36	74
	Cupriavidus basilensis FW507-4G11	RR42_RS12855		ribosome maturation protein RimP	no data	34	77
	Burkholderia phytofirmans PsJN	BPHYT_RS08060		ribosome maturation factor RimP	strong	37	64
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_05102		ribosome maturation factor RimP	sig.	35	74
	Fusobacterium nucleatum SB010	HUW76_01020		ribosome maturation factor RimP	strong	26	64
	Castellaniella sp019104865 MT123	ABCV34_RS02115		ribosome maturation factor RimP	no data	30	68
	Ralstonia solanacearum PSI07	RPSI07_RS17685		ribosome maturation factor RimP	no data	34	56
	Ralstonia solanacearum GMI1000	RS_RS06450		ribosome maturation factor	no data	34	56
	Ralstonia sp. UNC404CL21Col	ABZR87_RS11200		ribosome maturation factor RimP	no data	33	60
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS15670		ribosome maturation factor RimP	no data	33	60
	Ralstonia solanacearum UW163	UW163_RS13130		ribosome maturation factor RimP	no data	33	60
	Desulfovibrio vulgaris Miyazaki F	DvMF_2516		protein of unknown function DUF150 (RefSeq)	sig.	29	60
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_0707		Uncharacterized protein conserved in bacteria	no data	31	68
	Synechococcus elongatus PCC 7942	Synpcc7942_2023		hypothetical protein	strong	29	65
	Herbaspirillum seropedicae SmR1	HSERO_RS18005		ribosome maturation protein RimP	no data	30	64
	Variovorax sp. SCN45	GFF224		Bacterial ribosome SSU maturation protein RimP	no data	29	57
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS03080		ribosome assembly cofactor RimP	no data	34	47
	Variovorax sp. OAS795	ABID97_RS16495		ribosome maturation factor RimP	no data	28	60
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS22730		ribosome assembly cofactor RimP	no data	27	67
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF4341		FIG000325: clustered with transcription termination protein NusA	strong	29	56
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_14455		ribosome maturation factor	strong	37	40
	Mycobacterium tuberculosis H37Rv	Rv2842c		Conserved protein	no data	34	52
	Acidovorax sp. GW101-3H11	Ac3H11_2869		FIG000325: clustered with transcription termination protein NusA	no data	29	54
	Phocaeicola dorei CL03T12C01	ABI39_RS04610		ribosome assembly cofactor RimP	no data	36	31
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS12185		ribosome assembly cofactor RimP	no data	36	31