Homologs of GFF215 from Variovorax sp. SCN45

RNA polymerase sigma-54 factor RpoN
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF215 RNA polymerase sigma-54 factor RpoN insig. 100 100
o Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 84 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 61 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 52 93
o Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 53 89
o Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 54 93
o Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 52 93
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 55 93
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 50 89
o Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 51 82
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 48 95
o Cupriavidus basilensis FW507-4G11 RR42_RS19070 DNA-directed RNA polymerase sigma-70 factor insig. 51 92
o Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 56 87
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 49 92
o Dechlorosoma suillum PS Dsui_1302 RNA polymerase sigma factor, sigma-70 family cofit 52 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 91
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 45 91
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 44 97
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 46 88
o Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 45 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 45 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03722 ECF RNA polymerase sigma factor EcfG no data 46 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2582 RNA polymerase sigma-54 factor RpoN insig. 45 97
  Azospirillum sp. SherDot2 MPMX19_00923 hypothetical protein insig. 44 100
o Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 47 91
o Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 47 91
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS07010 RNA polymerase sigma factor no data 46 94
o Ralstonia solanacearum UW163 UW163_RS06605 RNA polymerase sigma factor no data 46 94
o Pseudomonas sp. DMC3 GFF1465 ECF RNA polymerase sigma factor EcfG insig. 45 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3977 RNA polymerase sigma-54 factor RpoN insig. 46 97
o Pseudomonas simiae WCS417 PS417_17070 RNA polymerase subunit sigma-24 insig. 46 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2200 RNA polymerase sigma-54 factor RpoN sig. 45 97
o Pseudomonas fluorescens FW300-N2C3 AO356_01625 RNA polymerase subunit sigma-24 insig. 46 97
o Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 43 96
o Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 46 91
o Pseudomonas orientalis W4I3 QF045_RS18740 sigma-70 family RNA polymerase sigma factor insig. 44 97
o Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 40 95
o Pseudomonas sp. RS175 PFR28_01251 ECF RNA polymerase sigma factor EcfG insig. 45 95
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 48 86
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 41 90
o Ralstonia sp. UNC404CL21Col ABZR87_RS02660 RNA polymerase sigma factor insig. 46 87
o Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 44 97
o Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 44 84
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 40 87
o Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 39 88
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 44 100
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 42 94
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 39 88
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 38 89
o Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 37 89
o Pseudomonas sp. SVBP6 COO64_RS10855 sigma-70 family RNA polymerase sigma factor insig. 43 100
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 37 94
o Pseudomonas sp. BP01 JOY50_RS05860 sigma-70 family RNA polymerase sigma factor no data 44 96
o Pseudomonas putida KT2440 PP_2888 putative ECF sigma factor PrtI no data 46 96
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 36 94
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 38 94
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 37 91
  Rhizobium sp. OAE497 ABIE40_RS11455 RNA polymerase sigma factor insig. 41 87
o Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 37 93
o Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 37 93
o Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 38 88
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 40 94
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 38 88
o Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 37 88
o Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 39 89
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 40 86
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3411 RNA polymerase sigma factor, sigma-70 family insig. 42 89
  Sinorhizobium meliloti 1021 SMc01419 RNA polymerase sigma factor protein sig. 39 94
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 37 90
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 41 84
  Sinorhizobium meliloti 1021 SMc02713 RNA polymerase sigma-E factor (sigma-24) protein strong 36 92
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24230 RNA polymerase sigma factor strong 33 93
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 38 90
  Sphingobium sp. HT1-2 GFF4551 hypothetical protein cofit 37 85
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 36 90
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 36 90
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 34 90
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 36 89
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 36 88
  Serratia liquefaciens MT49 IAI46_22980 RNA polymerase sigma factor insig. 37 80
  Burkholderia phytofirmans PsJN BPHYT_RS08845 RNA polymerase sigma factor insig. 36 89
  Agrobacterium fabrum C58 Atu2030 ECF family sigma factor insig. 39 81
  Sphingobium sp. HT1-2 GFF1466 RNA polymerase sigma-54 factor RpoN insig. 34 89
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 36 88
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 35 88
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 32 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 33 85
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16550 RNA polymerase sigma factor strong 32 93
  Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 33 88
  Phaeobacter inhibens DSM 17395 PGA1_78p00070 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' no data 34 82
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 34 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01799 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 89
  Bacteroides ovatus ATCC 8483 BACOVA_03979 Sigma-70 region 2 strong 32 85
  Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 31 87
  Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 34 96
  Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 34 96
  Rhizobium sp. OAE497 ABIE40_RS21790 sigma-70 family RNA polymerase sigma factor cofit 36 90
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS12225 RNA polymerase sigma factor cofit 36 81
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12805 RNA polymerase sigma factor strong 30 87
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 34 85