Homologs of DDA3937_RS03060 from Dickeya dadantii 3937

ribosome maturation factor RimP
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dickeya dadantii 3937 DDA3937_RS03060 ribosome maturation factor RimP no data 100 100
o Dickeya dianthicola 67-19 HGI48_RS03230 ribosome maturation factor RimP no data 99 100
o Dickeya dianthicola ME23 DZA65_RS03225 ribosome maturation factor RimP no data 99 100
o Escherichia coli BL21 ECD_03037 ribosome maturation factor for 30S subunits strong 91 100
o Escherichia fergusonii Becca EFB2_00653 Ribosome maturation factor RimP no data 91 100
  Escherichia coli Nissle 1917 ECOLIN_RS18205 ribosome maturation factor RimP no data 91 100
  Escherichia coli Nissle 1917 ECOLIN_RS18225 ribosome maturation factor RimP no data 91 100
  Escherichia coli Nissle 1917 ECOLIN_RS18245 ribosome maturation factor RimP no data 91 100
o Escherichia coli Nissle 1917 ECOLIN_RS18265 ribosome maturation factor RimP no data 91 100
o Enterobacter asburiae PDN3 EX28DRAFT_3221 Uncharacterized protein conserved in bacteria no data 91 100
o Enterobacter sp. TBS_079 MPMX20_04075 Ribosome maturation factor RimP no data 91 100
o Escherichia coli BW25113 b3170 rimP conserved protein (RefSeq) no data 91 100
o Escherichia coli ECOR27 NOLOHH_09900 rimP ribosome maturation factor RimP no data 91 100
o Escherichia coli ECOR38 HEPCGN_16975 rimP ribosome maturation factor RimP no data 91 100
o Escherichia coli ECRC101 OKFHMN_18100 rimP ribosome maturation factor RimP no data 91 100
o Escherichia coli ECRC101 MCAODC_08620 rimP ribosome maturation factor RimP no data 91 100
o Escherichia coli ECRC102 NIAGMN_15860 rimP ribosome maturation factor RimP no data 91 100
o Escherichia coli ECRC62 BNILDI_01635 rimP ribosome maturation factor RimP no data 91 100
o Escherichia coli ECRC98 JDDGAC_21725 rimP ribosome maturation factor RimP no data 91 100
o Escherichia coli ECRC99 KEDOAH_10050 rimP ribosome maturation factor RimP no data 91 100
o Klebsiella michiganensis M5al BWI76_RS25100 ribosome maturation factor no data 90 100
o Pectobacterium carotovorum WPP14 HER17_RS18220 ribosome maturation factor RimP no data 91 100
o Serratia liquefaciens MT49 IAI46_01925 ribosome maturation factor RimP no data 91 100
o Rahnella sp. WP5 EX31_RS08550 ribosome maturation factor RimP no data 88 100
o Erwinia tracheiphila SCR3 LU632_RS21070 rimP ribosome maturation factor RimP no data 90 100
o Pantoea sp. MT58 IAI47_17035 ribosome maturation factor RimP sig. 88 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1496 FIG000325: clustered with transcription termination protein NusA no data 92 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00530 Ribosome maturation factor RimP no data 91 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_03380 ribosome maturation factor RimP no data 72 100
o Shewanella amazonensis SB2B Sama_0959 hypothetical protein (RefSeq) no data 57 100
o Shewanella loihica PV-4 Shew_2829 hypothetical protein (RefSeq) no data 56 100
o Alteromonas macleodii MIT1002 MIT1002_01769 Ribosome maturation factor RimP no data 57 100
o Shewanella oneidensis MR-1 SO1202 conserved hypothetical protein (NCBI ptt file) no data 55 100
o Shewanella sp. ANA-3 Shewana3_1028 hypothetical protein (RefSeq) no data 54 100
o Pseudomonas stutzeri RCH2 Psest_0979 Uncharacterized protein conserved in bacteria no data 49 100
o Pseudomonas sp. S08-1 OH686_17135 Bacterial ribosome SSU maturation protein RimP no data 49 99
o Pseudomonas simiae WCS417 PS417_23980 ribosome maturation protein RimP no data 52 100
o Marinobacter adhaerens HP15 HP15_3069 protein belonging to uncharacterized protein family UPF0090 no data 50 100
o Pseudomonas fluorescens FW300-N2E3 AO353_05570 ribosome maturation protein RimP no data 53 99
o Pseudomonas fluorescens SBW25 PFLU_RS25820 ribosome maturation factor RimP no data 51 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25820 ribosome maturation factor RimP no data 51 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5090 FIG000325: clustered with transcription termination protein NusA no data 50 100
o Kangiella aquimarina DSM 16071 B158DRAFT_0112 Uncharacterized protein conserved in bacteria strong 47 95
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1163 FIG000325: clustered with transcription termination protein NusA no data 50 100
o Pseudomonas sp. RS175 PFR28_00088 Ribosome maturation factor RimP no data 52 99
o Pseudomonas fluorescens FW300-N2C3 AO356_07420 ribosome maturation protein RimP no data 51 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3355 FIG000325: clustered with transcription termination protein NusA no data 51 99
o Pseudomonas putida KT2440 PP_4714 ribosome maturation factor no data 49 99
o Pseudomonas syringae pv. syringae B728a Psyr_4182 Protein of unknown function DUF150 no data 51 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4182 Protein of unknown function DUF150 no data 51 99
o Lysobacter sp. OAE881 ABIE51_RS08385 ribosome maturation factor RimP no data 45 100
o Azospirillum brasilense Sp245 AZOBR_RS01420 ribosome maturation factor RimP no data 43 94
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2000.1 FIG000325: clustered with transcription termination protein NusA no data 44 96
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06035 ribosome maturation factor RimP no data 47 88
o Rhodanobacter sp. FW510-T8 OKGIIK_05840 rimP ribosome maturation protein RimP no data 43 97
o Azospirillum sp. SherDot2 MPMX19_02519 Ribosome maturation factor RimP no data 46 86
o Burkholderia phytofirmans PsJN BPHYT_RS08060 ribosome maturation factor RimP strong 45 96
o Rhodanobacter denitrificans MT42 LRK55_RS00830 ribosome maturation factor RimP no data 41 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS01055 ribosome maturation factor RimP no data 41 97
o Acinetobacter radioresistens SK82 MPMX26_00252 Ribosome maturation factor RimP strong 44 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS23110 ribosome maturation factor RimP sig. 45 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05102 ribosome maturation factor RimP sig. 44 95
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15670 ribosome maturation factor RimP no data 44 94
o Ralstonia solanacearum UW163 UW163_RS13130 ribosome maturation factor RimP no data 44 94
  Phaeobacter inhibens DSM 17395 PGA1_c34650 UPF0090 protein YhbC strong 42 86
o Paraburkholderia graminis OAS925 ABIE53_001828 ribosome maturation factor RimP sig. 44 95
o Ralstonia solanacearum PSI07 RPSI07_RS17685 ribosome maturation factor RimP no data 44 94
o Ralstonia solanacearum GMI1000 RS_RS06450 ribosome maturation factor no data 44 94
o Magnetospirillum magneticum AMB-1 AMB_RS20595 ribosome maturation factor cofit 39 96
o Ralstonia sp. UNC404CL21Col ABZR87_RS11200 ribosome maturation factor RimP no data 44 94
  Dinoroseobacter shibae DFL-12 Dshi_3560 protein of unknown function DUF150 (RefSeq) no data 40 86
o Dechlorosoma suillum PS Dsui_2724 hypothetical protein no data 43 95
o Desulfovibrio vulgaris Hildenborough JW710 DVU0511 conserved hypothetical protein (TIGR) insig. 37 97
  Rhodopseudomonas palustris CGA009 TX73_002280 ribosome maturation factor RimP sig. 39 87
o Cupriavidus basilensis FW507-4G11 RR42_RS12855 ribosome maturation protein RimP no data 39 94
o Caulobacter crescentus NA1000 CCNA_00044 ribosome maturation protein RimP strong 36 95
o Caulobacter crescentus NA1000 Δfur CCNA_00044 ribosome maturation protein RimP cofit 36 95
o Fusobacterium nucleatum SB010 HUW76_01020 ribosome maturation factor RimP strong 33 97
  Bosea sp. OAE506 ABIE41_RS04540 ribosome maturation factor RimP no data 38 81
  Agrobacterium fabrum C58 Atu0090 hypothetical protein no data 36 80
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2150 Uncharacterized protein conserved in bacteria no data 36 93
  Rhodospirillum rubrum S1H Rru_A3778 Protein of unknown function DUF150 (NCBI) no data 35 76
o Herbaspirillum seropedicae SmR1 HSERO_RS18005 ribosome maturation protein RimP no data 36 95
  Rhizobium sp. OAE497 ABIE40_RS00320 ribosome maturation factor RimP no data 38 76
  Sinorhizobium meliloti 1021 SMc02911 hypothetical protein no data 37 79
  Desulfovibrio vulgaris Miyazaki F DvMF_2516 protein of unknown function DUF150 (RefSeq) sig. 34 91
o Castellaniella sp019104865 MT123 ABCV34_RS02115 ribosome maturation factor RimP no data 36 87
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13990 ribosome maturation factor RimP no data 32 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0707 Uncharacterized protein conserved in bacteria no data 32 70
  Variovorax sp. SCN45 GFF224 Bacterial ribosome SSU maturation protein RimP no data 33 74
  Variovorax sp. OAS795 ABID97_RS16495 ribosome maturation factor RimP no data 32 76
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22730 ribosome assembly cofactor RimP no data 36 64
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4341 FIG000325: clustered with transcription termination protein NusA strong 29 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS03080 ribosome assembly cofactor RimP no data 37 63
  Mycobacterium tuberculosis H37Rv Rv2842c Conserved protein no data 35 66
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11965 ribosome assembly cofactor RimP strong 37 62
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14455 ribosome maturation factor strong 28 77
  Phocaeicola dorei CL03T12C01 ABI39_RS04610 ribosome assembly cofactor RimP no data 32 62
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12185 ribosome assembly cofactor RimP no data 32 62
  Acidovorax sp. GW101-3H11 Ac3H11_2869 FIG000325: clustered with transcription termination protein NusA no data 32 71