| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Shewanella loihica PV-4 | Shew_0933 | | methyltransferase type 11 (RefSeq) | insig. | 100 | 100 |
| | Sinorhizobium meliloti 1021 | SMa0279 | | hypothetical protein | insig. | 37 | 78 |
| o | Marinobacter adhaerens HP15 | HP15_1745 | | methyltransferase type 11 | cofit | 34 | 94 |
| o | Pseudomonas segetis P6 | ACVTMO_RS05135 | | class I SAM-dependent methyltransferase | insig. | 37 | 83 |
| | Pseudomonas sp. S08-1 | OH686_09385 | | SAM-dependent methyltransferase (UbiE paralog) | insig. | 36 | 78 |
| | Mycobacterium tuberculosis H37Rv | Rv1147 | | Conserved protein | insig. | 39 | 73 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS08505 | | methyltransferase domain-containing protein | sig. | 34 | 83 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS44345 | | methyltransferase domain-containing protein | sig. | 34 | 83 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_03455 | | Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG | sig. | 33 | 83 |
| | Caulobacter crescentus NA1000 | CCNA_03595 | | S-adenosylmethionine-dependent methyltransferase | insig. | 33 | 75 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03595 | | S-adenosylmethionine-dependent methyltransferase | insig. | 33 | 75 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c29610 | | phosphatidylethanolamine N-methyltransferase PmtA | strong | 41 | 50 |
| | Azospirillum sp. SherDot2 | MPMX19_05980 | | 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial | insig. | 39 | 50 |
| | Rhodopseudomonas palustris CGA009 | TX73_006705 | | class I SAM-dependent methyltransferase | no data | 34 | 63 |
| | Azospirillum brasilense Sp245 | AZOBR_RS25575 | | phosphatidylethanolamine N-methyltransferase | sig. | 39 | 50 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS05220 | | S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB | insig. | 32 | 57 |
| | Azospirillum brasilense Sp245 | AZOBR_RS22845 | | methyltransferase | insig. | 33 | 64 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS24960 | | class I SAM-dependent methyltransferase | insig. | 36 | 48 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00196 | | Ubiquinone/menaquinone biosynthesis C-methylase UbiE | insig. | 31 | 57 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2712 | | Phosphatidylethanolamine N-methyltransferase (RefSeq) | insig. | 35 | 56 |
| | Paraburkholderia graminis OAS925 | ABIE53_001313 | | SAM-dependent methyltransferase | sig. | 31 | 57 |
| | Xanthobacter sp. DMC5 | GFF1793 | | Aklanonic acid methyltransferase DauC | no data | 36 | 49 |
| | Bosea sp. OAE506 | ABIE41_RS10850 | | class I SAM-dependent methyltransferase | no data | 29 | 67 |
| | Rhodopseudomonas palustris CGA009 | TX73_020565 | | class I SAM-dependent methyltransferase | insig. | 32 | 50 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3368 | | ubiquinone/menaquinone biosynthesis methyltransferase (RefSeq) | no data | 34 | 52 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS24955 | | methyltransferase type 11 | insig. | 26 | 73 |
| | Pseudomonas sp. BP01 | JOY50_RS16620 | | class I SAM-dependent methyltransferase | insig. | 35 | 55 |
| | Variovorax sp. OAS795 | ABID97_RS16745 | | class I SAM-dependent methyltransferase | cofit | 32 | 62 |
| | Pseudomonas putida KT2440 | PP_1987 | | Methlytransferase, UbiE/COQ5 family | insig. | 35 | 55 |
| | Pseudomonas stutzeri RCH2 | Psest_3940 | | ubiquinone/menaquinone biosynthesis methyltransferases | no data | 33 | 51 |
| | Acinetobacter baumannii LAC-4 | RR41_RS17230 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 51 |
| | Serratia liquefaciens MT49 | IAI46_00185 | | class I SAM-dependent methyltransferase | insig. | 34 | 70 |
| | Cellulophaga baltica 18 | M666_RS08585 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 27 | 74 |
| | Azospirillum sp. SherDot2 | MPMX19_01135 | | putative methyltransferase YcgJ | insig. | 27 | 75 |
| | Azospirillum sp. SherDot2 | MPMX19_02804 | | 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial | insig. | 36 | 48 |
| | Pantoea sp. MT58 | IAI47_18285 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 46 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS15265 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 46 |
| | Sphingobium sp. HT1-2 | GFF218 | | Transcriptional regulator, ArsR family / Methyltransferase fusion | cofit | 29 | 72 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS01915 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 34 | 51 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS01915 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 34 | 51 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00597 | | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE | no data | 34 | 51 |
| | Pseudomonas simiae WCS417 | PS417_01870 | | ubiquinone biosynthesis methyltransferase UbiE | no data | 34 | 51 |
| | Erwinia amylovora T8 | OLJFJH_06500 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1 4-benzoquinol methylase UbiE | no data | 32 | 46 |
| | Pectobacterium carotovorum WPP14 | HER17_RS20610 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 32 | 46 |
| | Pseudomonas sp. S08-1 | OH686_10145 | | 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase | no data | 31 | 64 |
| | Pseudomonas segetis P6 | ACVTMO_RS21115 | ubiE | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 51 |
| | Pseudomonas putida KT2440 | PP_5011 | | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE | no data | 29 | 65 |
| | Mycobacterium tuberculosis H37Rv | Rv3342 | | Possible methyltransferase (methylase) | sig. | 35 | 66 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4042 | | SAM-dependent methyltransferase YafE (UbiE paralog) | insig. | 33 | 45 |
| | Dickeya dadantii 3937 | DDA3937_RS20330 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 46 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3946 | | SAM-dependent methyltransferase YafE (UbiE paralog) | sig. | 30 | 55 |
| | Azospirillum sp. SherDot2 | MPMX19_03826 | | putative methyltransferase | no data | 38 | 52 |
| | Paraburkholderia graminis OAS925 | ABIE53_001332 | | sarcosine/dimethylglycine N-methyltransferase | insig. | 31 | 48 |
| | Acinetobacter radioresistens SK82 | MPMX26_00267 | | 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial | no data | 29 | 51 |
| | Rahnella sp. WP5 | EX31_RS14625 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 30 | 46 |
| | Pseudomonas sp. BP01 | JOY50_RS09635 | ubiE | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 29 | 65 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_08650 | ubiE | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1 4-benzoquinol methylase UbiE | no data | 32 | 46 |
| | Erwinia tracheiphila SCR3 | LU632_RS24005 | ubiE | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 32 | 46 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_21410 | | SAM-dependent methyltransferase | cofit | 33 | 46 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS11145 | ubiE;go_function=methyltransferase | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1 4-benzoquinol methylase UbiE | no data | 31 | 51 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_28210 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1 4-benzoquinol methylase UbiE | no data | 31 | 51 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS50940 | ubiE;go_function=methyltransferase | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1 4-benzoquinol methylase UbiE | no data | 31 | 51 |
| | Variovorax sp. OAS795 | ABID97_RS05395 | | methyltransferase domain-containing protein | insig. | 30 | 48 |
| | Serratia liquefaciens MT49 | IAI46_01065 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 46 |
| | Serratia liquefaciens MT49 | IAI46_04605 | | class I SAM-dependent methyltransferase | insig. | 30 | 47 |
| | Pseudomonas sp. SVBP6 | COO64_RS13515 | ubiE | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 29 | 65 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03946 | | putative methyltransferase YcgJ | cofit | 31 | 55 |
| | Pseudomonas sp. SVBP6 | COO64_RS13150 | | class I SAM-dependent methyltransferase | insig. | 28 | 84 |
| | Agrobacterium fabrum C58 | Atu0390 | | ubiquinone/menaquinone biosynthesis methyltransferase | insig. | 35 | 44 |
| | Variovorax sp. SCN45 | GFF304 | | Ubiquinone/menaquinone biosynthesis methyltransferase family protein | insig. | 31 | 64 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2490 | | Biotin synthesis protein BioC | strong | 28 | 78 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS08170 | | S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB | insig. | 31 | 47 |
| | Pseudomonas sp. DMC3 | GFF787 | | putative methyltransferase YcgJ | cofit | 31 | 55 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_15870 | | SAM-dependent methyltransferase | sig. | 30 | 57 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS01330 | | class I SAM-dependent methyltransferase | sig. | 30 | 57 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS34225 | | class I SAM-dependent methyltransferase | sig. | 30 | 57 |
| | Shewanella oneidensis MR-1 | SO4199 | ubiE | ubiquinone/menaquinone biosynthesis methlytransferase UbiE (NCBI ptt file) | no data | 28 | 57 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS15820 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 24 | 72 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4794 | | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) | no data | 38 | 46 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_00445 | | ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE | no data | 31 | 46 |
| | Paraburkholderia graminis OAS925 | ABIE53_000771 | | demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase | no data | 37 | 51 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_248 | | FIG025233: SAM-dependent methyltransferases | insig. | 33 | 57 |
| | Dickeya dianthicola 67-19 | HGI48_RS00895 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 46 |
| | Dickeya dianthicola ME23 | DZA65_RS00955 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 31 | 46 |
| | Alteromonas macleodii MIT1002 | MIT1002_03631 | | Ubiquinone/menaquinone biosynthesis methyltransferase ubiE | no data | 31 | 51 |
| | Rhodopseudomonas palustris CGA009 | TX73_000430 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 29 | 48 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1255 | | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) | no data | 36 | 51 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS00960 | | recombinase RecA | insig. | 32 | 56 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05067 | | ubiquinone/menaquinone biosynthesis methyltransferase | strong | 28 | 65 |
| | Pseudomonas orientalis W4I3 | QF045_RS05115 | | methyltransferase domain-containing protein | insig. | 28 | 78 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS08525 | | SAM-dependent methyltransferase | insig. | 27 | 68 |
| | Shewanella amazonensis SB2B | Sama_3202 | | ubiquinone/menaquinone biosynthesis methlytransferase UbiE (RefSeq) | no data | 26 | 57 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS02005 | | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | no data | 35 | 51 |
| | Pseudomonas sp. RS175 | PFR28_04989 | | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE | no data | 32 | 51 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_09505 | | ubiquinone biosynthesis methyltransferase UbiE | no data | 32 | 51 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3779 | | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) | no data | 32 | 51 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_13680 | | SAM-dependent methyltransferase | insig. | 29 | 46 |
| | Shewanella sp. ANA-3 | Shewana3_3725 | | demethylmenaquinone methyltransferase (RefSeq) | no data | 29 | 51 |
| | Escherichia coli BL21 | ECD_03726 | | bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase | no data | 29 | 45 |
| | Escherichia fergusonii Becca | EFB2_04782 | | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE | no data | 29 | 45 |