Conservation of cofitness between Xcc-8004.4073.1 and Xcc-8004.4398.1 in Xanthomonas campestris pv. campestris strain 8004

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4073.1 Amidophosphoribosyltransferase (EC 2.4.2.14) 1.0 Xcc-8004.4398.1 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.88 5
Lysobacter sp. OAE881 0.82 ABIE51_RS06180 amidophosphoribosyltransferase 0.86 ABIE51_RS04620 serine hydroxymethyltransferase 0.82 17
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS06775 amidophosphoribosyltransferase 0.84 ABZR86_RS10715 serine hydroxymethyltransferase 0.95 28
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_05570 purF amidophosphoribosyltransferase 0.83 OKGIIK_11440 glyA serine hydroxymethyltransferase 0.79 23
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS01340 amidophosphoribosyltransferase 0.84 LRK54_RS04625 serine hydroxymethyltransferase 0.76 3
Rhodanobacter denitrificans MT42 0.71 LRK55_RS01105 amidophosphoribosyltransferase 0.84 LRK55_RS04400 serine hydroxymethyltransferase low > 63
Pseudomonas sp. S08-1 0.65 OH686_04420 amidophosphoribosyltransferase 0.76 OH686_16230 Serine hydroxymethyltransferase — —
Pseudomonas putida KT2440 0.64 PP_2000 amidophosphoribosyl transferase 0.76 PP_0671 serine hydroxymethyltransferase — —
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.75 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas sp. RS175 0.64 PFR28_02811 Amidophosphoribosyltransferase 0.75 PFR28_03786 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS20515 amidophosphoribosyltransferase 0.76 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas simiae WCS417 0.64 PS417_18535 amidophosphoribosyltransferase 0.76 PS417_24280 serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25 0.64 PFLU_RS20515 amidophosphoribosyltransferase 0.76 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas stutzeri RCH2 0.64 Psest_2579 amidophosphoribosyltransferase 0.77 Psest_3404 Glycine/serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_20690 amidophosphoribosyltransferase 0.76 AO353_14020 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.75 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_21465 amidophosphoribosyltransferase 0.75 AO356_15725 serine hydroxymethyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1668 amidophosphoribosyltransferase 0.75 Psyr_4270 serine hydroxymethyltransferase 0.91 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1668 amidophosphoribosyltransferase 0.75 Psyr_4270 serine hydroxymethyltransferase 0.88 2
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1488 amidophosphoribosyltransferase (EC 2.4.2.14) 0.70 B158DRAFT_1908 Glycine/serine hydroxymethyltransferase — —
Shewanella loihica PV-4 0.62 Shew_2302 amidophosphoribosyltransferase (RefSeq) 0.75 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) 0.90 7
Marinobacter adhaerens HP15 0.62 HP15_1821 amidophosphoribosyltransferase 0.75 HP15_489 glycine hydroxymethyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_05115 amidophosphoribosyltransferase 0.69 CSW01_04820 serine hydroxymethyltransferase low > 62
Shewanella amazonensis SB2B 0.61 Sama_2146 amidophosphoribosyltransferase (RefSeq) 0.75 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) 0.77 42
Erwinia tracheiphila SCR3 0.61 LU632_RS07865 purF amidophosphoribosyltransferase 0.71 LU632_RS17915 serine hydroxymethyltransferase — —
Shewanella sp. ANA-3 0.61 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) 0.75 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) 0.88 23
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.70 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.70 OHPLBJKB_01156 Serine hydroxymethyltransferase low > 73
Pantoea sp. MT58 0.61 IAI47_06275 amidophosphoribosyltransferase 0.73 IAI47_04960 serine hydroxymethyltransferase — —
Serratia liquefaciens MT49 0.61 IAI46_17810 amidophosphoribosyltransferase 0.71 IAI46_19395 serine hydroxymethyltransferase — —
Escherichia coli ECRC98 0.61 JDDGAC_26675 purF amidophosphoribosyltransferase 0.70 JDDGAC_25175 glyA serine hydroxymethyltransferase — —
Escherichia coli ECOR38 0.61 HEPCGN_21910 purF amidophosphoribosyltransferase 0.70 HEPCGN_20655 glyA serine hydroxymethyltransferase 0.71 67
Escherichia coli ECRC100 0.61 OKFHMN_22715 purF amidophosphoribosyltransferase 0.70 OKFHMN_21510 glyA serine hydroxymethyltransferase low > 80
Escherichia coli ECRC62 0.61 BNILDI_13255 purF amidophosphoribosyltransferase 0.70 BNILDI_11985 glyA serine hydroxymethyltransferase low > 75
Escherichia coli ECRC102 0.61 NIAGMN_20485 purF amidophosphoribosyltransferase 0.70 NIAGMN_19280 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC101 0.61 MCAODC_13755 purF amidophosphoribosyltransferase 0.70 MCAODC_12040 glyA serine hydroxymethyltransferase low > 87
Escherichia coli Nissle 1917 0.61 ECOLIN_RS13405 amidophosphoribosyltransferase 0.70 ECOLIN_RS14440 serine hydroxymethyltransferase — —
Escherichia fergusonii Becca 0.61 EFB2_01546 Amidophosphoribosyltransferase 0.70 EFB2_01345 Serine hydroxymethyltransferase — —
Escherichia coli ECRC99 0.61 KEDOAH_05480 purF amidophosphoribosyltransferase 0.70 KEDOAH_06710 glyA serine hydroxymethyltransferase — —
Escherichia coli ECOR27 0.60 NOLOHH_14335 purF amidophosphoribosyltransferase 0.70 NOLOHH_13185 glyA serine hydroxymethyltransferase low > 75
Escherichia coli BL21 0.60 ECD_02237 amidophosphoribosyltransferase 0.70 ECD_02443 serine hydroxymethyltransferase low > 61
Klebsiella michiganensis M5al 0.60 BWI76_RS20350 amidophosphoribosyltransferase 0.70 BWI76_RS21225 serine hydroxymethyltransferase — —
Escherichia coli BW25113 0.60 b2312 purF amidophosphoribosyltransferase (NCBI) 0.70 b2551 glyA serine hydroxymethyltransferase (NCBI) — —
Enterobacter sp. TBS_079 0.60 MPMX20_03247 Amidophosphoribosyltransferase 0.69 MPMX20_03420 Serine hydroxymethyltransferase — —
Dickeya dadantii 3937 0.60 DDA3937_RS14435 amidophosphoribosyltransferase 0.72 DDA3937_RS15600 serine hydroxymethyltransferase — —
Shewanella oneidensis MR-1 0.60 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) 0.74 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) 0.88 20
Pectobacterium carotovorum WPP14 0.60 HER17_RS07020 amidophosphoribosyltransferase 0.71 HER17_RS05950 serine hydroxymethyltransferase — —
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) 0.70 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase — —
Rahnella sp. WP5 0.60 EX31_RS19570 amidophosphoribosyltransferase 0.72 EX31_RS20585 serine hydroxymethyltransferase — —
Acinetobacter radioresistens SK82 0.60 MPMX26_01122 Amidophosphoribosyltransferase 0.73 MPMX26_02049 Serine hydroxymethyltransferase — —
Dickeya dianthicola 67-19 0.60 HGI48_RS14405 amidophosphoribosyltransferase 0.72 HGI48_RS15700 serine hydroxymethyltransferase — —
Dickeya dianthicola ME23 0.60 DZA65_RS15335 amidophosphoribosyltransferase 0.72 DZA65_RS16775 serine hydroxymethyltransferase — —
Alteromonas macleodii MIT1002 0.59 MIT1002_02524 Amidophosphoribosyltransferase 0.70 MIT1002_02702 Serine hydroxymethyltransferase 0.97 22
Dechlorosoma suillum PS 0.58 Dsui_3186 amidophosphoribosyltransferase 0.66 Dsui_1265 glycine/serine hydroxymethyltransferase — —
Paraburkholderia graminis OAS925 0.58 ABIE53_004816 amidophosphoribosyltransferase 0.65 ABIE53_000888 glycine hydroxymethyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_06060 amidophosphoribosyltransferase 0.65 H281DRAFT_04726 serine hydroxymethyltransferase — —
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS33840 amidophosphoribosyltransferase 0.65 BPHYT_RS03725 serine hydroxymethyltransferase 0.65 82
Ralstonia solanacearum GMI1000 0.57 RS_RS09930 amidophosphoribosyltransferase 0.66 RS_RS03670 serine hydroxymethyltransferase — —
Ralstonia solanacearum UW163 0.57 UW163_RS11175 amidophosphoribosyltransferase 0.66 UW163_RS00670 serine hydroxymethyltransferase — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS02550 amidophosphoribosyltransferase 0.66 RALBFv3_RS12895 serine hydroxymethyltransferase — —
Ralstonia solanacearum PSI07 0.57 RPSI07_RS14765 amidophosphoribosyltransferase 0.65 RPSI07_RS20330 serine hydroxymethyltransferase — —
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS14465 amidophosphoribosyltransferase 0.67 ABZR87_RS08955 serine hydroxymethyltransferase — —
Castellaniella sp019104865 MT123 0.56 ABCV34_RS04130 amidophosphoribosyltransferase 0.69 ABCV34_RS06400 serine hydroxymethyltransferase — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS14325 amidophosphoribosyltransferase 0.66 RR42_RS15485 serine hydroxymethyltransferase — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS17680 amidophosphoribosyltransferase 0.69 QEN71_RS33600 serine hydroxymethyltransferase low > 153
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS16445 amidophosphoribosyltransferase 0.66 HSERO_RS06140 serine hydroxymethyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.65 GFF5152 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.66 Ac3H11_2921 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Variovorax sp. SCN45 0.52 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.65 GFF560 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Variovorax sp. OAS795 0.52 ABID97_RS21635 amidophosphoribosyltransferase 0.66 ABID97_RS17890 serine hydroxymethyltransferase — —
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0004 purF amidophosphoribosyltransferase 0.60 Synpcc7942_0282 glyA serine hydroxymethyltransferase — —
Caulobacter crescentus NA1000 0.31 CCNA_01730 amidophosphoribosyltransferase 0.57 CCNA_01419 serine hydroxymethyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01730 amidophosphoribosyltransferase 0.57 CCNA_01419 serine hydroxymethyltransferase low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0161 purF amidophosphoribosyltransferase (TIGR) 0.61 DVU1203 glyA serine hydroxymethyltransferase (TIGR) — —
Rhodospirillum rubrum S1H 0.30 Rru_A0404 Amidophosphoribosyl transferase (NCBI) 0.57 Rru_A1827 Glycine hydroxymethyltransferase (NCBI) low > 58
Mycobacterium tuberculosis H37Rv 0.30 Rv0808 Amidophosphoribosyltransferase PurF (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (gpatase) 0.54 Rv0070c Serine hydroxymethyltransferase GlyA2 (serine methylase 2) (SHMT 2) — —
Bosea sp. OAE506 0.30 ABIE41_RS17810 amidophosphoribosyltransferase 0.61 ABIE41_RS19780 serine hydroxymethyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_2307 amidophosphoribosyltransferase (RefSeq) 0.60 DvMF_3097 glyA serine hydroxymethyltransferase (RefSeq) — —
Azospirillum sp. SherDot2 0.30 MPMX19_00906 Amidophosphoribosyltransferase 0.58 MPMX19_00727 Serine hydroxymethyltransferase 2 — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_2132 amidophosphoribosyltransferase (RefSeq) 0.61 Dshi_0821 Glycine hydroxymethyltransferase (RefSeq) 0.88 8
Azospirillum brasilense Sp245 0.29 AZOBR_RS08310 amidophosphoribosyltransferase 0.57 AZOBR_RS10015 serine hydroxymethyltransferase — —
Rhodopseudomonas palustris CGA009 0.29 TX73_015990 amidophosphoribosyltransferase 0.58 TX73_014115 serine hydroxymethyltransferase — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c10810 amidophosphoribosyltransferase PurF 0.60 PGA1_c11870 serine hydroxymethyltransferase GlyA 0.90 8
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS03735 amidophosphoribosyltransferase 0.55 A4249_RS06040 serine hydroxymethyltransferase — —
Agrobacterium fabrum C58 0.28 Atu1075 amidophosphoribosyltransferase 0.61 Atu1165 serine hydroxymethyltransferase — —
Rhizobium sp. OAE497 0.28 ABIE40_RS06270 amidophosphoribosyltransferase 0.62 ABIE40_RS06715 serine hydroxymethyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_3626 amidophosphoribosyltransferase (EC 2.4.2.14) 0.54 Ga0059261_1986 Glycine/serine hydroxymethyltransferase — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS10545 amidophosphoribosyltransferase 0.58 AMB_RS11815 serine hydroxymethyltransferase — —
Sinorhizobium meliloti 1021 0.27 SMc00554 amidophosphoribosyltransferase 0.60 SMc01770 serine hydroxymethyltransferase 0.92 33
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS10430 amidophosphoribosyltransferase 0.54 HMPREF1078_RS02145 serine hydroxymethyltransferase low > 61
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05376 putative amidophosphoribosyltransferase 0.55 BACOVA_02446 glycine hydroxymethyltransferase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.11 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) 0.55 BT0738 serine hydroxymethyltransferase (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.11 ABI39_RS18960 amidophosphoribosyltransferase 0.55 ABI39_RS17420 serine hydroxymethyltransferase low > 72
Phocaeicola vulgatus CL09T03C04 0.11 HMPREF1058_RS04675 amidophosphoribosyltransferase 0.55 HMPREF1058_RS03800 serine hydroxymethyltransferase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.11 Echvi_4653 Glutamine phosphoribosylpyrophosphate amidotransferase 0.53 Echvi_1188 Glycine/serine hydroxymethyltransferase — —

Not shown: 4 genomes with orthologs for Xcc-8004.4073.1 only; 5 genomes with orthologs for Xcc-8004.4398.1 only