| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 1.0 | Xcc-8004.2945.1 | | Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) | 0.84 | 19 |
| Lysobacter sp. OAE881 | 0.57 | ABIE51_RS01815 | | shikimate dehydrogenase | 0.52 | ABIE51_RS13310 | | imidazole glycerol phosphate synthase subunit HisH | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS14985 | | shikimate dehydrogenase | 0.55 | ABZR86_RS06715 | | imidazole glycerol phosphate synthase subunit HisH | 0.95 | 43 |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS08360 | | shikimate dehydrogenase | 0.52 | LRK55_RS01370 | | imidazole glycerol phosphate synthase subunit HisH | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS08595 | | shikimate dehydrogenase | 0.52 | LRK54_RS01590 | | imidazole glycerol phosphate synthase subunit HisH | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_15365 | aroE | shikimate dehydrogenase | 0.51 | OKGIIK_04965 | hisH | imidazole glycerol phosphate synthase subunit HisH | low | > 52 |
| Shewanella oneidensis MR-1 | 0.40 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | 0.42 | SO2070 | hisH | amidotransferase HisH (NCBI ptt file) | 0.88 | 28 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS00120 | | shikimate dehydrogenase | 0.34 | PFLU_RS01610 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS00120 | | shikimate dehydrogenase | 0.34 | PFLU_RS01610 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Pseudomonas simiae WCS417 | 0.39 | PS417_00125 | | shikimate dehydrogenase | 0.34 | PS417_01565 | | imidazole glycerol phosphate synthase | — | — |
| Pseudomonas sp. RS175 | 0.39 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | 0.35 | PFR28_04930 | | Imidazole glycerol phosphate synthase subunit HisH | — | — |
| Serratia liquefaciens MT49 | 0.39 | IAI46_23240 | | shikimate dehydrogenase | 0.43 | IAI46_08195 | | imidazole glycerol phosphate synthase subunit HisH | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_10670 | | shikimate dehydrogenase | 0.34 | AO353_12075 | | imidazole glycerol phosphate synthase subunit HisH | 0.70 | 33 |
| Vibrio cholerae E7946 ATCC 55056 | 0.38 | CSW01_00280 | | shikimate dehydrogenase | 0.43 | CSW01_05765 | | imidazole glycerol phosphate synthase subunit HisH | low | > 62 |
| Pseudomonas fluorescens FW300-N2C3 | 0.38 | AO356_11315 | | shikimate dehydrogenase | 0.34 | AO356_09810 | | imidazole glycerol phosphate synthase subunit HisH | 0.56 | 9 |
| Shewanella loihica PV-4 | 0.38 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | 0.43 | Shew_2201 | hisH | imidazole glycerol phosphate synthase subunit HisH (RefSeq) | 0.79 | 45 |
| Shewanella sp. ANA-3 | 0.38 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | 0.43 | Shewana3_1850 | hisH | imidazole glycerol phosphate synthase subunit HisH (RefSeq) | 0.90 | 35 |
| Pseudomonas fluorescens GW456-L13 | 0.38 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.34 | PfGW456L13_361 | | Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) | 0.75 | 37 |
| Pseudomonas fluorescens FW300-N1B4 | 0.38 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.34 | Pf1N1B4_1626 | | Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) | 0.52 | 40 |
| Dechlorosoma suillum PS | 0.38 | Dsui_0443 | | shikimate 5-dehydrogenase | 0.32 | Dsui_1416 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.38 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.35 | Pf6N2E2_3841 | | Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.37 | Psyr_0025 | | shikimate dehydrogenase | 0.34 | Psyr_4896 | | imidazole glycerol phosphate synthase subunit hisH | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.37 | Psyr_0025 | | shikimate dehydrogenase | 0.34 | Psyr_4896 | | imidazole glycerol phosphate synthase subunit hisH | 0.51 | 46 |
| Rahnella sp. WP5 | 0.37 | EX31_RS15950 | | shikimate dehydrogenase | 0.45 | EX31_RS11455 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS01990 | | shikimate 5-dehydrogenase | 0.32 | HSERO_RS21015 | | imidazole glycerol phosphate synthase | low | > 78 |
| Pseudomonas sp. S08-1 | 0.37 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | 0.34 | OH686_14580 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | low | > 80 |
| Pantoea sp. MT58 | 0.37 | IAI47_02315 | | shikimate dehydrogenase | 0.41 | IAI47_07075 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Pseudomonas putida KT2440 | 0.37 | PP_0074 | | shikimate 5-dehydrogenase | 0.35 | PP_0290 | | Imidazole glycerol phosphate synthase subunit HisH | — | — |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS19100 | | shikimate dehydrogenase | 0.42 | DDA3937_RS09720 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Ralstonia solanacearum PSI07 | 0.36 | RPSI07_RS11300 | | shikimate dehydrogenase | 0.29 | RPSI07_RS10410 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS25645 | | shikimate dehydrogenase | 0.43 | BWI76_RS18940 | | imidazole glycerol phosphate synthase subunit HisH | 0.77 | 29 |
| Shewanella amazonensis SB2B | 0.36 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | 0.42 | Sama_1945 | hisH | imidazole glycerol phosphate synthase subunit HisH (RefSeq) | low | > 62 |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS19190 | | shikimate dehydrogenase | 0.42 | HGI48_RS09730 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | 0.42 | OHPLBJKB_01677 | | Imidazole glycerol phosphate synthase subunit HisH | low | > 73 |
| Escherichia coli BL21 | 0.36 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | 0.42 | ECD_01925 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | low | > 61 |
| Escherichia coli BW25113 | 0.36 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | 0.42 | b2023 | hisH | imidazole glycerol phosphate synthase subunit HisH (NCBI) | 0.92 | 27 |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS27130 | | shikimate dehydrogenase | 0.32 | QEN71_RS27845 | | imidazole glycerol phosphate synthase subunit HisH | 0.75 | 19 |
| Escherichia coli ECOR38 | 0.36 | HEPCGN_16385 | aroE | shikimate dehydrogenase | 0.42 | HEPCGN_03205 | hisH | imidazole glycerol phosphate synthase subunit HisH | 0.81 | 40 |
| Escherichia fergusonii Becca | 0.36 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | 0.42 | EFB2_01833 | | Imidazole glycerol phosphate synthase subunit HisH | low | > 86 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_06291 | | shikimate dehydrogenase (EC 1.1.1.25) | 0.31 | H281DRAFT_05657 | | imidazole glycerol phosphate synthase subunit hisH | — | — |
| Escherichia coli ECRC102 | 0.36 | NIAGMN_15325 | aroE | shikimate dehydrogenase | 0.41 | NIAGMN_22445 | hisH | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Escherichia coli ECRC101 | 0.36 | MCAODC_08085 | aroE | shikimate dehydrogenase | 0.42 | MCAODC_20440 | hisH | imidazole glycerol phosphate synthase subunit HisH | low | > 87 |
| Escherichia coli Nissle 1917 | 0.36 | ECOLIN_RS18840 | | shikimate dehydrogenase | 0.42 | ECOLIN_RS11960 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Ralstonia sp. UNC404CL21Col | 0.36 | ABZR87_RS01605 | | shikimate dehydrogenase | 0.30 | ABZR87_RS02480 | | imidazole glycerol phosphate synthase subunit HisH | 0.40 | 70 |
| Acinetobacter radioresistens SK82 | 0.36 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | 0.32 | MPMX26_02846 | | Imidazole glycerol phosphate synthase subunit HisH | low | > 36 |
| Ralstonia solanacearum UW163 | 0.36 | UW163_RS07680 | | shikimate dehydrogenase | 0.28 | UW163_RS06790 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Escherichia coli ECRC100 | 0.36 | OKFHMN_17565 | aroE | shikimate dehydrogenase | 0.42 | OKFHMN_24500 | hisH | imidazole glycerol phosphate synthase subunit HisH | 0.93 | 46 |
| Escherichia coli ECRC98 | 0.36 | JDDGAC_21185 | aroE | shikimate dehydrogenase | 0.42 | JDDGAC_28610 | hisH | imidazole glycerol phosphate synthase subunit HisH | 0.81 | 32 |
| Ralstonia solanacearum IBSBF1503 | 0.36 | RALBFv3_RS05945 | | shikimate dehydrogenase | 0.28 | RALBFv3_RS06825 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Dickeya dianthicola ME23 | 0.36 | DZA65_RS20315 | | shikimate dehydrogenase | 0.42 | DZA65_RS10040 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Escherichia coli ECRC99 | 0.36 | KEDOAH_10585 | aroE | shikimate dehydrogenase | 0.42 | KEDOAH_03650 | hisH | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Enterobacter asburiae PDN3 | 0.35 | EX28DRAFT_0046 | | shikimate dehydrogenase | 0.41 | EX28DRAFT_0536 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.35 | RS_RS13890 | | shikimate dehydrogenase | 0.30 | RS_RS14770 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS11620 | | shikimate dehydrogenase | 0.28 | ABCV34_RS11240 | | imidazole glycerol phosphate synthase subunit HisH | low | > 48 |
| Escherichia coli ECRC62 | 0.35 | BNILDI_02165 | aroE | shikimate dehydrogenase | 0.42 | BNILDI_14725 | hisH | imidazole glycerol phosphate synthase subunit HisH | 0.91 | 48 |
| Pectobacterium carotovorum WPP14 | 0.35 | HER17_RS02250 | | shikimate dehydrogenase | 0.40 | HER17_RS12245 | | imidazole glycerol phosphate synthase subunit HisH | 0.95 | 5 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.35 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.41 | GFF3909 | | Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) | low | > 78 |
| Escherichia coli ECOR27 | 0.35 | NOLOHH_09355 | aroE | shikimate dehydrogenase | 0.42 | NOLOHH_15815 | hisH | imidazole glycerol phosphate synthase subunit HisH | low | > 75 |
| Enterobacter sp. TBS_079 | 0.35 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | 0.39 | MPMX20_03005 | | Imidazole glycerol phosphate synthase subunit HisH | 0.83 | 48 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_0029 | | shikimate 5-dehydrogenase | 0.34 | Psest_0153 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | — | — |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_003560 | | shikimate dehydrogenase | 0.30 | ABIE53_003697 | | glutamine amidotransferase | — | — |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | 0.30 | BPHYT_RS17690 | | imidazole glycerol phosphate synthase | 0.67 | 43 |
| Erwinia tracheiphila SCR3 | 0.34 | LU632_RS22445 | aroE | shikimate dehydrogenase | 0.43 | LU632_RS08930 | hisH | imidazole glycerol phosphate synthase subunit HisH | 0.56 | 28 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_3750 | | shikimate dehydrogenase | 0.33 | HP15_3011 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.30 | GFF1311 | | Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) | — | — |
| Kangiella aquimarina DSM 16071 | 0.30 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | 0.22 | B158DRAFT_2290 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | low | > 40 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS17645 | | shikimate dehydrogenase | 0.34 | RR42_RS18895 | | imidazole glycerol phosphate synthase | — | — |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.32 | Ac3H11_4731 | | Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c35150 | | shikimate dehydrogenase AroE | 0.31 | PGA1_c09320 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Alteromonas macleodii MIT1002 | 0.26 | MIT1002_00029 | | Shikimate dehydrogenase | 0.47 | MIT1002_02636 | | Imidazole glycerol phosphate synthase subunit HisH | — | — |
| Variovorax sp. OAS795 | 0.25 | ABID97_RS06300 | | shikimate dehydrogenase | 0.35 | ABID97_RS23135 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Variovorax sp. SCN45 | 0.25 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.35 | GFF5350 | | Imidazole glycerol phosphate synthase amidotransferase subunit HisH | — | — |
| Agrobacterium fabrum C58 | 0.24 | Atu0003 | | shikimate 5-dehydrogenase | 0.29 | Atu0041 | | glutamine amidotransferase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | 0.30 | Dshi_0795 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.24 | ABIE41_RS04650 | | shikimate dehydrogenase | 0.30 | ABIE41_RS03955 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Sinorhizobium meliloti 1021 | 0.23 | SMc02791 | | shikimate 5-dehydrogenase | 0.27 | SMc02572 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.23 | DVU0115 | aroE | shikimate 5-dehydrogenase (TIGR) | 0.37 | DVU0285 | hisH | IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.22 | TX73_022410 | | shikimate dehydrogenase | 0.29 | TX73_001615 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | 0.34 | MPMX19_02545 | | Imidazole glycerol phosphate synthase subunit HisH | — | — |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS19250 | | shikimate dehydrogenase | 0.29 | ABIE40_RS19450 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Rhodospirillum rubrum S1H | 0.22 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | 0.31 | Rru_A3596 | | Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI) | — | — |
| Synechococcus elongatus PCC 7942 | 0.20 | Synpcc7942_2467 | aroE | shikimate 5-dehydrogenase | 0.32 | Synpcc7942_1481 | hisH | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Methanococcus maripaludis S2 | 0.20 | MMP_RS04855 | | shikimate dehydrogenase | 0.33 | MMP_RS05595 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Magnetospirillum magneticum AMB-1 | 0.19 | AMB_RS23010 | | shikimate dehydrogenase | 0.30 | AMB_RS22935 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Methanococcus maripaludis JJ | 0.19 | MMJJ_RS00280 | | shikimate dehydrogenase | 0.30 | MMJJ_RS03990 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.19 | DvMF_1962 | | shikimate 5-dehydrogenase (RefSeq) | 0.35 | DvMF_2305 | hisH | IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.19 | CCNA_00003 | | shikimate 5-dehydrogenase | 0.28 | CCNA_03851 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | low | > 67 |
| Caulobacter crescentus NA1000 | 0.19 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.28 | CCNA_03851 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | 0.89 | 27 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.18 | A4249_RS13660 | | shikimate dehydrogenase | 0.49 | A4249_RS10705 | | imidazole glycerol phosphate synthase subunit HisH | — | — |
| Azospirillum brasilense Sp245 | 0.17 | AZOBR_RS01765 | | shikimate 5-dehydrogenase | 0.33 | AZOBR_RS01670 | | imidazole glycerol phosphate synthase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.17 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.34 | Ga0059261_3124 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | low | > 68 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.13 | Echvi_1145 | | Shikimate 5-dehydrogenase | 0.39 | Echvi_2514 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | — | — |
| Bacteroides ovatus ATCC 8483 | 0.12 | BACOVA_05065 | | putative shikimate dehydrogenase | 0.43 | BACOVA_00221 | | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | — | — |
| Mycobacterium tuberculosis H37Rv | 0.12 | Rv2552c | | Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) | 0.27 | Rv1602 | | Probable amidotransferase HisH | — | — |
Not shown: 1 genomes with orthologs for Xcc-8004.5020.1 only; 9 genomes with orthologs for Xcc-8004.2945.1 only