Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.1967.1 in Xanthomonas campestris pv. campestris strain 8004

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.1967.1 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.92 3
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.67 ABIE51_RS08265 tryptophan synthase subunit alpha 0.76 7
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.52 ABZR86_RS07995 tryptophan synthase subunit alpha 0.94 49
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.52 LRK54_RS01680 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) low > 59
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.52 LRK55_RS01460 tryptophan synthase subunit alpha low > 63
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.53 OKGIIK_04850 trpA tryptophan synthase subunit alpha low > 52
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.24 SO3024 trpA tryptophan synthase, alpha subunit (NCBI ptt file) 0.90 10
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00120 shikimate dehydrogenase 0.38 PFLU_RS00175 tryptophan synthase subunit alpha — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00120 shikimate dehydrogenase 0.38 PFLU_RS00175 tryptophan synthase subunit alpha — —
Pseudomonas simiae WCS417 0.39 PS417_00125 shikimate dehydrogenase 0.37 PS417_00180 tryptophan synthase subunit alpha — —
Pseudomonas sp. RS175 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.38 PFR28_04716 Tryptophan synthase alpha chain — —
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.27 IAI46_14045 tryptophan synthase subunit alpha 0.56 71
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10670 shikimate dehydrogenase 0.38 AO353_10705 tryptophan synthase subunit alpha 0.70 32
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.27 CSW01_05925 tryptophan synthase subunit alpha low > 62
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_11315 shikimate dehydrogenase 0.39 AO356_10910 tryptophan synthase subunit alpha 0.57 5
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.26 Shew_2256 trpA tryptophan synthase subunit alpha (RefSeq) 0.86 7
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.25 Shewana3_1515 trpA tryptophan synthase subunit alpha (RefSeq) 0.93 16
Dechlorosoma suillum PS 0.38 Dsui_0443 shikimate 5-dehydrogenase 0.45 Dsui_3191 tryptophan synthase, alpha subunit — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.39 PfGW456L13_565 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.67 60
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.39 Pf1N1B4_1830 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.58 13
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.39 Pf6N2E2_4047 Tryptophan synthase alpha chain (EC 4.2.1.20) — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.38 Psyr_0033 tryptophan synthase, alpha chain low > 86
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.25 EX31_RS09980 tryptophan synthase subunit alpha — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.38 Psyr_0033 tryptophan synthase, alpha chain 0.71 5
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.42 HSERO_RS16470 tryptophan synthase subunit alpha 0.60 41
Pseudomonas sp. S08-1 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.37 OH686_12430 tryptophan synthase, alpha subunit 0.86 1
Pseudomonas putida KT2440 0.37 PP_0074 shikimate 5-dehydrogenase 0.38 PP_0082 tryptophan synthase alpha chain — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.26 IAI47_09165 tryptophan synthase subunit alpha — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.27 DDA3937_RS10460 tryptophan synthase subunit alpha — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.48 RPSI07_RS14740 tryptophan synthase subunit alpha — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.25 BWI76_RS11840 tryptophan synthase subunit alpha 0.76 34
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.25 Sama_2134 trpA tryptophan synthase subunit alpha (RefSeq) 0.76 5
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.25 b1260 trpA tryptophan synthase subunit alpha (NCBI) 0.93 14
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.25 ECD_01234 tryptophan synthase, alpha subunit 0.58 31
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.25 OHPLBJKB_02423 Tryptophan synthase alpha chain low > 73
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.44 QEN71_RS17655 tryptophan synthase subunit alpha 0.84 2
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.27 HGI48_RS10460 tryptophan synthase subunit alpha — —
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.25 HEPCGN_25515 trpA tryptophan synthase subunit alpha 0.76 68
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.25 EFB2_02666 Tryptophan synthase alpha chain low > 86
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.42 H281DRAFT_06065 tryptophan synthase, alpha chain — —
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.48 UW163_RS11150 tryptophan synthase subunit alpha — —
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.25 NIAGMN_26845 trpA tryptophan synthase subunit alpha — —
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.25 JDDGAC_05220 trpA tryptophan synthase subunit alpha 0.83 26
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.49 ABZR87_RS14490 tryptophan synthase subunit alpha 0.62 24
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.25 KEDOAH_26075 trpA tryptophan synthase subunit alpha — —
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.25 OKFHMN_02675 trpA tryptophan synthase subunit alpha 0.87 73
Acinetobacter radioresistens SK82 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.43 MPMX26_02611 Tryptophan synthase alpha chain — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.48 RALBFv3_RS02575 tryptophan synthase subunit alpha — —
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.27 DZA65_RS10940 tryptophan synthase subunit alpha — —
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.25 MCAODC_15590 trpA tryptophan synthase subunit alpha 0.84 22
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.25 ECOLIN_RS07595 tryptophan synthase subunit alpha — —
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.25 EX28DRAFT_0932 tryptophan synthase, alpha chain (EC 4.2.1.20) 0.64 7
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.48 RS_RS09955 tryptophan synthase subunit alpha low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.25 GFF2726 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 78
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.25 NOLOHH_20335 trpA tryptophan synthase subunit alpha 0.93 3
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.25 BNILDI_18480 trpA tryptophan synthase subunit alpha 0.98 1
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.25 HER17_RS10940 tryptophan synthase subunit alpha 0.93 23
Castellaniella sp019104865 MT123 0.35 ABCV34_RS11620 shikimate dehydrogenase 0.45 ABCV34_RS08430 tryptophan synthase subunit alpha — —
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.25 MPMX20_02514 Tryptophan synthase alpha chain 0.81 56
Pseudomonas stutzeri RCH2 0.35 Psest_0029 shikimate 5-dehydrogenase 0.38 Psest_0062 tryptophan synthase, alpha subunit — —
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.44 ABIE53_004811 tryptophan synthase alpha chain — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.42 BPHYT_RS33865 tryptophan synthase alpha chain 0.72 19
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.25 LU632_RS12775 trpA tryptophan synthase subunit alpha low > 74
Marinobacter adhaerens HP15 0.34 HP15_3750 shikimate dehydrogenase 0.49 HP15_1826 tryptophan synthase, alpha subunit — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.42 GFF3354 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.51 46
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.45 RR42_RS14350 tryptophan synthase alpha chain — —
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.45 Ac3H11_1535 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.96 5
Phaeobacter inhibens DSM 17395 0.26 PGA1_c35150 shikimate dehydrogenase AroE 0.38 PGA1_c04930 tryptophan synthase alpha chain — —
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.24 MIT1002_01425 Tryptophan synthase alpha chain — —
Variovorax sp. OAS795 0.25 ABID97_RS06300 shikimate dehydrogenase 0.44 ABID97_RS08425 tryptophan synthase subunit alpha — —
Variovorax sp. SCN45 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.44 GFF3882 Tryptophan synthase alpha chain (EC 4.2.1.20) — —
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.39 Atu0019 tryptophan synthase alpha subunit — —
Bosea sp. OAE506 0.24 ABIE41_RS04650 shikimate dehydrogenase 0.38 ABIE41_RS03930 tryptophan synthase subunit alpha — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.36 Dshi_0952 tryptophan synthase, alpha subunit (RefSeq) — —
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.39 SMc02765 tryptophan synthase subunit alpha — —
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.30 DVU0471 trpA tryptophan synthase, alpha subunit (TIGR) — —
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.37 TX73_000365 tryptophan synthase subunit alpha — —
Azospirillum sp. SherDot2 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.36 MPMX19_02737 Tryptophan synthase alpha chain — —
Rhizobium sp. OAE497 0.22 ABIE40_RS19250 shikimate dehydrogenase 0.39 ABIE40_RS19340 tryptophan synthase subunit alpha — —
Rhodospirillum rubrum S1H 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.39 Rru_A3428 Tryptophan synthase (NCBI) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.33 Synpcc7942_0411 trpA tryptophan synthase subunit alpha — —
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.32 MMP_RS05185 tryptophan synthase subunit alpha — —
Methanococcus maripaludis JJ 0.19 MMJJ_RS00280 shikimate dehydrogenase 0.31 MMJJ_RS09195 tryptophan synthase subunit alpha — —
Magnetospirillum magneticum AMB-1 0.19 AMB_RS23010 shikimate dehydrogenase 0.40 AMB_RS20300 tryptophan synthase subunit alpha — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.27 DvMF_1740 trpA tryptophan synthase subunit alpha (RefSeq) — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.35 CCNA_03657 tryptophan synthase alpha chain 0.93 10
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.35 CCNA_03657 tryptophan synthase alpha chain low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.38 A4249_RS11320 tryptophan synthase subunit alpha — —
Azospirillum brasilense Sp245 0.17 AZOBR_RS01765 shikimate 5-dehydrogenase 0.37 AZOBR_RS00520 tryptophan synthase subunit alpha — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.33 Ga0059261_0239 tryptophan synthase, alpha chain (EC 4.2.1.20) 0.88 49
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.30 Echvi_2511 tryptophan synthase, alpha subunit — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.29 BACOVA_03785 tryptophan synthase, alpha subunit — —
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.26 Rv1613 Probable tryptophan synthase, alpha subunit TrpA — —

Not shown: 2 genomes with orthologs for Xcc-8004.5020.1 only; 9 genomes with orthologs for Xcc-8004.1967.1 only