| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.4620.1 | | Alanine racemase (EC 5.1.1.1) | 1.0 | Xcc-8004.1967.1 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | 0.62 | 20 |
| Rhodanobacter denitrificans MT42 | 0.67 | LRK55_RS00355 | | alanine racemase | 0.52 | LRK55_RS01460 | | tryptophan synthase subunit alpha | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.67 | LRK54_RS00585 | | alanine racemase | 0.52 | LRK54_RS01680 | | tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.67 | OKGIIK_06670 | alr | alanine racemase | 0.53 | OKGIIK_04850 | trpA | tryptophan synthase subunit alpha | — | — |
| Pseudomonas sp. S08-1 | 0.65 | OH686_13695 | | alanine racemase | 0.37 | OH686_12430 | | tryptophan synthase, alpha subunit | low | > 80 |
| Pseudomonas putida KT2440 | 0.64 | PP_5269 | | alanine racemase, PLP-binding | 0.38 | PP_0082 | | tryptophan synthase alpha chain | — | — |
| Pseudomonas simiae WCS417 | 0.62 | PS417_27695 | | alanine racemase | 0.37 | PS417_00180 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_814 | | Alanine racemase (EC 5.1.1.1) | 0.39 | PfGW456L13_565 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens SBW25 | 0.62 | PFLU_RS29370 | | alanine racemase | 0.38 | PFLU_RS00175 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.62 | PFLU_RS29370 | | alanine racemase | 0.38 | PFLU_RS00175 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.62 | Psyr_0237 | | alanine racemase | 0.38 | Psyr_0033 | | tryptophan synthase, alpha chain | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.62 | Psyr_0237 | | alanine racemase | 0.38 | Psyr_0033 | | tryptophan synthase, alpha chain | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2146 | | Alanine racemase (EC 5.1.1.1) | 0.39 | Pf1N1B4_1830 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_09145 | | alanine racemase | 0.38 | AO353_10705 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_12630 | | alanine racemase | 0.39 | AO356_10910 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas sp. RS175 | 0.61 | PFR28_04397 | | Alanine racemase | 0.38 | PFR28_04716 | | Tryptophan synthase alpha chain | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.61 | Pf6N2E2_4393 | | Alanine racemase (EC 5.1.1.1) | 0.39 | Pf6N2E2_4047 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0699 | | alanine racemase | 0.38 | Psest_0062 | | tryptophan synthase, alpha subunit | — | — |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS01920 | | alanine racemase | 0.25 | BWI76_RS11840 | | tryptophan synthase subunit alpha | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF1422 | | Alanine racemase (EC 5.1.1.1) | 0.25 | GFF2726 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | low | > 78 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS23405 | | alanine racemase | 0.25 | ECOLIN_RS07595 | | tryptophan synthase subunit alpha | — | — |
| Escherichia coli BL21 | 0.40 | ECD_03925 | | alanine racemase, biosynthetic, PLP-binding | 0.25 | ECD_01234 | | tryptophan synthase, alpha subunit | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_03990 | | Alanine racemase, biosynthetic | 0.25 | OHPLBJKB_02423 | | Tryptophan synthase alpha chain | low | > 73 |
| Escherichia fergusonii Becca | 0.40 | EFB2_04547 | | Alanine racemase, biosynthetic | 0.25 | EFB2_02666 | | Tryptophan synthase alpha chain | low | > 86 |
| Escherichia coli BW25113 | 0.40 | b4053 | alr | alanine racemase (NCBI) | 0.25 | b1260 | trpA | tryptophan synthase subunit alpha (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_06350 | alr | alanine racemase | 0.25 | BNILDI_18480 | trpA | tryptophan synthase subunit alpha | low | > 75 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_11540 | alr | alanine racemase | 0.25 | HEPCGN_25515 | trpA | tryptophan synthase subunit alpha | low | > 87 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_05175 | alr | alanine racemase | 0.25 | NOLOHH_20335 | trpA | tryptophan synthase subunit alpha | low | > 75 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_16560 | alr | alanine racemase | 0.25 | JDDGAC_05220 | trpA | tryptophan synthase subunit alpha | low | > 86 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_15225 | alr | alanine racemase | 0.25 | KEDOAH_26075 | trpA | tryptophan synthase subunit alpha | — | — |
| Escherichia coli ECRC101 | 0.40 | MCAODC_03435 | alr | alanine racemase | 0.25 | MCAODC_15590 | trpA | tryptophan synthase subunit alpha | low | > 87 |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_12925 | alr | alanine racemase | 0.25 | OKFHMN_02675 | trpA | tryptophan synthase subunit alpha | low | > 80 |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_02698 | | Alanine racemase, catabolic | 0.25 | MPMX20_02514 | | Tryptophan synthase alpha chain | low | > 85 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_10770 | alr | alanine racemase | 0.25 | NIAGMN_26845 | trpA | tryptophan synthase subunit alpha | — | — |
| Dickeya dadantii 3937 | 0.39 | DDA3937_RS17510 | | alanine racemase | 0.27 | DDA3937_RS10460 | | tryptophan synthase subunit alpha | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_01955 | | alanine racemase | 0.27 | CSW01_05925 | | tryptophan synthase subunit alpha | — | — |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS13065 | dadX | catabolic alanine racemase DadX | 0.25 | LU632_RS12775 | trpA | tryptophan synthase subunit alpha | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_4259 | | alanine racemase | 0.25 | EX28DRAFT_0932 | | tryptophan synthase, alpha chain (EC 4.2.1.20) | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS10740 | | alanine racemase | 0.42 | HSERO_RS16470 | | tryptophan synthase subunit alpha | — | — |
| Pantoea sp. MT58 | 0.39 | IAI47_08895 | | catabolic alanine racemase DadX | 0.26 | IAI47_09165 | | tryptophan synthase subunit alpha | — | — |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS17565 | | alanine racemase | 0.27 | HGI48_RS10460 | | tryptophan synthase subunit alpha | low | > 71 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS06875 | | alanine racemase | 0.48 | RS_RS09955 | | tryptophan synthase subunit alpha | — | — |
| Rahnella sp. WP5 | 0.39 | EX31_RS11885 | | alanine racemase | 0.25 | EX31_RS09980 | | tryptophan synthase subunit alpha | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.39 | HER17_RS03655 | | alanine racemase | 0.25 | HER17_RS10940 | | tryptophan synthase subunit alpha | low | > 75 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS18650 | | alanine racemase | 0.27 | DZA65_RS10940 | | tryptophan synthase subunit alpha | low | > 75 |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS11665 | | alanine racemase | 0.49 | ABZR87_RS14490 | | tryptophan synthase subunit alpha | — | — |
| Serratia liquefaciens MT49 | 0.38 | IAI46_22945 | | alanine racemase | 0.27 | IAI46_14045 | | tryptophan synthase subunit alpha | low | > 86 |
| Shewanella amazonensis SB2B | 0.38 | Sama_3057 | alr | alanine racemase (RefSeq) | 0.25 | Sama_2134 | trpA | tryptophan synthase subunit alpha (RefSeq) | — | — |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS17275 | | alanine racemase | 0.48 | RPSI07_RS14740 | | tryptophan synthase subunit alpha | — | — |
| Shewanella oneidensis MR-1 | 0.38 | SO3916 | alr | alanine racemase, biosynthetic (NCBI ptt file) | 0.24 | SO3024 | trpA | tryptophan synthase, alpha subunit (NCBI ptt file) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS00205 | | alanine racemase | 0.48 | RALBFv3_RS02575 | | tryptophan synthase subunit alpha | — | — |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_0714 | alr | alanine racemase (RefSeq) | 0.25 | Shewana3_1515 | trpA | tryptophan synthase subunit alpha (RefSeq) | — | — |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS13535 | | alanine racemase | 0.48 | UW163_RS11150 | | tryptophan synthase subunit alpha | — | — |
| Dechlorosoma suillum PS | 0.37 | Dsui_2411 | | alanine racemase | 0.45 | Dsui_3191 | | tryptophan synthase, alpha subunit | — | — |
| Shewanella loihica PV-4 | 0.37 | Shew_3277 | alr | alanine racemase (RefSeq) | 0.26 | Shew_2256 | trpA | tryptophan synthase subunit alpha (RefSeq) | — | — |
| Paraburkholderia graminis OAS925 | 0.37 | ABIE53_002527 | | alanine racemase | 0.44 | ABIE53_004811 | | tryptophan synthase alpha chain | — | — |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00544 | | Alanine racemase | 0.24 | MIT1002_01425 | | Tryptophan synthase alpha chain | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.37 | H281DRAFT_00589 | | alanine racemase | 0.42 | H281DRAFT_06065 | | tryptophan synthase, alpha chain | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF1915 | | Alanine racemase (EC 5.1.1.1) | 0.42 | GFF3354 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Variovorax sp. SCN45 | 0.36 | GFF5109 | | Alanine racemase (EC 5.1.1.1) | 0.44 | GFF3882 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS06315 | | alanine racemase | 0.44 | QEN71_RS17655 | | tryptophan synthase subunit alpha | — | — |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS03685 | | alanine racemase | 0.44 | ABID97_RS08425 | | tryptophan synthase subunit alpha | — | — |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS12240 | | alanine racemase | 0.42 | BPHYT_RS33865 | | tryptophan synthase alpha chain | — | — |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3382 | | Alanine racemase, catabolic (EC 5.1.1.1) | 0.45 | Ac3H11_1535 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.35 | RR42_RS12035 | | alanine racemase | 0.45 | RR42_RS14350 | | tryptophan synthase alpha chain | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS06375 | | alanine racemase | 0.45 | ABCV34_RS08430 | | tryptophan synthase subunit alpha | — | — |
| Marinobacter adhaerens HP15 | 0.33 | HP15_630 | | alanine racemase | 0.49 | HP15_1826 | | tryptophan synthase, alpha subunit | — | — |
| Acinetobacter radioresistens SK82 | 0.31 | MPMX26_01153 | | Alanine racemase | 0.43 | MPMX26_02611 | | Tryptophan synthase alpha chain | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS08850 | | alanine racemase | 0.52 | ABZR86_RS07995 | | tryptophan synthase subunit alpha | — | — |
| Synechococcus elongatus PCC 7942 | 0.25 | Synpcc7942_2201 | alr | alanine racemase | 0.33 | Synpcc7942_0411 | trpA | tryptophan synthase subunit alpha | — | — |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS09255 | | alanine racemase | 0.67 | ABIE51_RS08265 | | tryptophan synthase subunit alpha | — | — |
| Methanococcus maripaludis JJ | 0.25 | MMJJ_RS06585 | | alanine racemase | 0.31 | MMJJ_RS09195 | | tryptophan synthase subunit alpha | — | — |
| Methanococcus maripaludis S2 | 0.25 | MMP_RS07770 | | alanine racemase | 0.32 | MMP_RS05185 | | tryptophan synthase subunit alpha | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.23 | A4249_RS03755 | | alanine racemase | 0.38 | A4249_RS11320 | | tryptophan synthase subunit alpha | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.23 | CCNA_01733 | | alanine racemase | 0.35 | CCNA_03657 | | tryptophan synthase alpha chain | low | > 67 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.23 | DVU0955 | alr | alanine racemase (TIGR) | 0.30 | DVU0471 | trpA | tryptophan synthase, alpha subunit (TIGR) | — | — |
| Caulobacter crescentus NA1000 | 0.23 | CCNA_01733 | | alanine racemase | 0.35 | CCNA_03657 | | tryptophan synthase alpha chain | low | > 66 |
| Desulfovibrio vulgaris Miyazaki F | 0.22 | DvMF_1349 | | alanine racemase (RefSeq) | 0.27 | DvMF_1740 | trpA | tryptophan synthase subunit alpha (RefSeq) | low | > 51 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_06140 | | Alanine racemase, biosynthetic | 0.36 | MPMX19_02737 | | Tryptophan synthase alpha chain | — | — |
| Rhodopseudomonas palustris CGA009 | 0.21 | TX73_015960 | | alanine racemase | 0.37 | TX73_000365 | | tryptophan synthase subunit alpha | — | — |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS17795 | | alanine racemase | 0.38 | ABIE41_RS03930 | | tryptophan synthase subunit alpha | — | — |
| Agrobacterium fabrum C58 | 0.21 | Atu3292 | | alanine racemase | 0.39 | Atu0019 | | tryptophan synthase alpha subunit | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS08350 | | alanine racemase | 0.37 | AZOBR_RS00520 | | tryptophan synthase subunit alpha | — | — |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A0409 | | Alanine racemase region (NCBI) | 0.39 | Rru_A3428 | | Tryptophan synthase (NCBI) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c10880 | | alanine racemase, biosynthetic | 0.38 | PGA1_c04930 | | tryptophan synthase alpha chain | — | — |
| Magnetospirillum magneticum AMB-1 | 0.19 | AMB_RS10575 | | alanine racemase | 0.40 | AMB_RS20300 | | tryptophan synthase subunit alpha | — | — |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_2378 | | alanine racemase (RefSeq) | 0.36 | Dshi_0952 | | tryptophan synthase, alpha subunit (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.18 | SMc00557 | | alanine racemase | 0.39 | SMc02765 | | tryptophan synthase subunit alpha | low | > 103 |
| Rhizobium sp. OAE497 | 0.18 | ABIE40_RS06295 | | alanine racemase | 0.39 | ABIE40_RS19340 | | tryptophan synthase subunit alpha | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.17 | Ga0059261_0986 | | alanine racemase | 0.33 | Ga0059261_0239 | | tryptophan synthase, alpha chain (EC 4.2.1.20) | — | — |
| Bifidobacterium breve UCC2003 | 0.14 | BBR_RS13170 | | alanine racemase | 0.23 | BBR_RS15810 | | tryptophan synthase subunit alpha | — | — |
Not shown: 2 genomes with orthologs for Xcc-8004.4620.1 only; 11 genomes with orthologs for Xcc-8004.1967.1 only