Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.1049.1 in Xanthomonas campestris pv. campestris strain 8004

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.89 8
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.46 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.72 14
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.47 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.97 12
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.59 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.59 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.46 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit low > 52
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.58 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.88 18
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00120 shikimate dehydrogenase 0.83 PFLU_RS20580 3-isopropylmalate dehydratase large subunit
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00120 shikimate dehydrogenase 0.83 PFLU_RS20580 3-isopropylmalate dehydratase large subunit
Pseudomonas simiae WCS417 0.39 PS417_00125 shikimate dehydrogenase 0.83 PS417_18600 isopropylmalate isomerase
Pseudomonas sp. RS175 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.83 PFR28_02824 3-isopropylmalate dehydratase large subunit
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.69 11
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.57 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10670 shikimate dehydrogenase 0.83 AO353_20620 isopropylmalate isomerase 0.74 19
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.57 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.80 31
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.57 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.91 25
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_11315 shikimate dehydrogenase 0.83 AO356_21400 isopropylmalate isomerase 0.46 54
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.83 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.53 31
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.83 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.78 22
Dechlorosoma suillum PS 0.38 Dsui_0443 shikimate 5-dehydrogenase 0.65 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.83 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.81 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.64 16
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.81 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.66 13
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.60 EX31_RS03690 3-isopropylmalate dehydratase large subunit
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.69 HSERO_RS16515 isopropylmalate isomerase 0.76 10
Pseudomonas sp. S08-1 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.87 OH686_04480 3-isopropylmalate dehydratase large subunit low > 80
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.59 IAI47_16010 3-isopropylmalate dehydratase large subunit
Pseudomonas putida KT2440 0.37 PP_0074 shikimate 5-dehydrogenase 0.82 PP_1985 3-isopropylmalate dehydratase large subunit
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.60 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.57 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.68 59
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.59 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.77 26
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.70 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.74 17
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.60 ECD_00074 3-isopropylmalate dehydratase large subunit 0.56 45
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.60 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.69 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.60 76
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.60 HGI48_RS18065 3-isopropylmalate dehydratase large subunit
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.60 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.93 12
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.69 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.60 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.60 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.82 27
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.60 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.74 76
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.60 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.94 41
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.71 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.65 10
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.70 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.60 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.75 27
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.60 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.60 DZA65_RS19210 3-isopropylmalate dehydratase large subunit
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.70 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.44 39
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.60 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.82 32
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.60 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Acinetobacter radioresistens SK82 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.73 MPMX26_00345 3-isopropylmalate dehydratase large subunit low > 36
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.60 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit low > 76
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.70 RS_RS10000 3-isopropylmalate dehydratase large subunit low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.59 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.60 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.85 43
Castellaniella sp019104865 MT123 0.35 ABCV34_RS11620 shikimate dehydrogenase 0.69 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit low > 48
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.59 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.94 17
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.60 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.93 13
Pseudomonas stutzeri RCH2 0.35 Psest_0029 shikimate 5-dehydrogenase 0.88 Psest_2591 3-isopropylmalate dehydratase, large subunit
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.59 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.84 44
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.69 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.69 BPHYT_RS33915 isopropylmalate isomerase 0.73 16
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.55 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.50 52
Marinobacter adhaerens HP15 0.34 HP15_3750 shikimate dehydrogenase 0.76 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.66 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.47 69
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase 0.74 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit low > 40
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.71 RR42_RS14400 isopropylmalate isomerase 0.75 24
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.90 18
Phaeobacter inhibens DSM 17395 0.26 PGA1_c35150 shikimate dehydrogenase AroE 0.58 PGA1_c29780 3-isopropylmalate dehydratase large subunit
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.56 MIT1002_00947 3-isopropylmalate dehydratase large subunit
Variovorax sp. OAS795 0.25 ABID97_RS06300 shikimate dehydrogenase 0.67 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Variovorax sp. SCN45 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.66 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 127
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit
Dinoroseobacter shibae DFL-12 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq)
Bosea sp. OAE506 0.24 ABIE41_RS04650 shikimate dehydrogenase 0.63 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.62 SMc03823 isopropylmalate isomerase large subunit
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.19 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data)
Azospirillum sp. SherDot2 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.63 MPMX19_01998 3-isopropylmalate dehydratase large subunit
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.60 TX73_001245 3-isopropylmalate dehydratase large subunit
Rhizobium sp. OAE497 0.22 ABIE40_RS19250 shikimate dehydrogenase 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit
Rhodospirillum rubrum S1H 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.65 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI)
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.45 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.21 MMP_RS05930 3-isopropylmalate dehydratase large subunit
Magnetospirillum magneticum AMB-1 0.19 AMB_RS23010 shikimate dehydrogenase 0.60 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Methanococcus maripaludis JJ 0.19 MMJJ_RS00280 shikimate dehydrogenase 0.21 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.19 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq)
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.59 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.92 12
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.59 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.45 A4249_RS10005 3-isopropylmalate dehydratase large subunit
Azospirillum brasilense Sp245 0.17 AZOBR_RS01765 shikimate 5-dehydrogenase 0.63 AZOBR_RS03545 isopropylmalate isomerase
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.59 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.91 30
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.48 Echvi_2059 3-isopropylmalate dehydratase, large subunit
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.48 BACOVA_04603 3-isopropylmalate dehydratase, large subunit
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.55 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)

Not shown: 1 genomes with orthologs for Xcc-8004.5020.1 only; 9 genomes with orthologs for Xcc-8004.1049.1 only