| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3177 | | Recombination protein MgsA | 1.0 | Psyr_4520 | | Excinuclease ABC subunit A | 0.31 | 12 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3177 | | Recombination protein MgsA | 1.00 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_22185 | | recombination factor protein RarA | 0.94 | AO356_14785 | | ABC-ATPase UvrA | 0.55 | 7 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_02606 | | Replication-associated recombination protein A | 0.93 | PFR28_03974 | | UvrABC system protein A | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.92 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.94 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.34 | 8 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.93 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | 0.27 | 11 |
| Pseudomonas putida KT2440 | 0.91 | PP_4002 | | DNA-dependent ATPase required for recombination | 0.92 | PP_0483 | | excinuclease (uvrABC system protein A) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_27640 | | recombination factor protein RarA | 0.93 | AO353_06855 | | ABC-ATPase UvrA | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.93 | PfGW456L13_1283 | | Excinuclease ABC subunit A | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS18520 | | replication-associated recombination protein A | 0.93 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS18520 | | replication-associated recombination protein A | 0.93 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas simiae WCS417 | 0.90 | PS417_16480 | | recombination factor protein RarA | 0.93 | PS417_25395 | | excinuclease ABC subunit A | 0.21 | 33 |
| Pseudomonas sp. S08-1 | 0.89 | OH686_00270 | | Replication-associated recombination protein RarA | 0.89 | OH686_15495 | | excinuclease ABC subunit A | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.87 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.88 | Psest_3576 | | excinuclease ABC, A subunit | 0.23 | 8 |
| Kangiella aquimarina DSM 16071 | 0.67 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.75 | B158DRAFT_0885 | | excinuclease ABC, A subunit | 0.34 | 26 |
| Marinobacter adhaerens HP15 | 0.63 | HP15_1817 | | recombination factor protein RarA | 0.76 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | low | > 73 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS09670 | | recombination factor protein RarA | 0.75 | BWI76_RS01950 | | excinuclease ABC subunit A | low | > 92 |
| Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.75 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | low | > 76 |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_01554 | | Replication-associated recombination protein A | 0.75 | MPMX20_00276 | | UvrABC system protein A | low | > 85 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.74 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.59 | Shew_2022 | | recombination factor protein RarA (RefSeq) | 0.73 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.75 | GFF1429 | | Excinuclease ABC subunit A | 0.34 | 71 |
| Rahnella sp. WP5 | 0.59 | EX31_RS18515 | | replication-associated recombination protein A | 0.75 | EX31_RS11990 | | excinuclease ABC subunit UvrA | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_05630 | | replication-associated recombination protein A | 0.75 | CSW01_02080 | | UvrABC system protein A | 0.59 | 32 |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS09930 | | replication-associated recombination protein A | 0.75 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS09620 | | replication-associated recombination protein A | 0.75 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | low | > 71 |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.75 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | low | > 74 |
| Shewanella oneidensis MR-1 | 0.59 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.74 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | 0.32 | 6 |
| Shewanella amazonensis SB2B | 0.58 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.73 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | low | > 62 |
| Cupriavidus basilensis FW507-4G11 | 0.58 | RR42_RS04355 | | recombination factor protein RarA | 0.67 | RR42_RS02145 | | excinuclease ABC subunit A | low | > 128 |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.76 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia fergusonii Becca | 0.58 | EFB2_03169 | | Replication-associated recombination protein A | 0.76 | EFB2_04533 | | UvrABC system protein A | low | > 86 |
| Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.76 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | low | > 55 |
| Escherichia coli BW25113 | 0.58 | b0892 | ycaJ | recombination protein (NCBI) | 0.76 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.58 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.75 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | 0.64 | 20 |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.76 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC100 | 0.58 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.75 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | low | > 80 |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.76 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | low | > 75 |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.76 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | low | > 87 |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.76 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.76 | OHPLBJKB_03983 | | UvrABC system protein A | low | > 73 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.76 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | low | > 87 |
| Escherichia coli ECRC62 | 0.58 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.76 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | low | > 75 |
| Serratia liquefaciens MT49 | 0.58 | IAI46_08570 | | replication-associated recombination protein A | 0.75 | IAI46_22905 | | excinuclease ABC subunit UvrA | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.58 | LU632_RS09755 | | replication-associated recombination protein A | 0.74 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | low | > 74 |
| Pantoea sp. MT58 | 0.58 | IAI47_12900 | | replication-associated recombination protein A | 0.75 | IAI47_17815 | | excinuclease ABC subunit UvrA | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS12345 | | replication-associated recombination protein A | 0.75 | HER17_RS03550 | | excinuclease ABC subunit UvrA | low | > 75 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_001292 | | putative ATPase | 0.68 | ABIE53_000732 | | excinuclease ABC subunit A | 0.55 | 6 |
| Paraburkholderia sabiae LMG 24235 | 0.57 | QEN71_RS03415 | | replication-associated recombination protein A | 0.68 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.57 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.69 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.69 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS05100 | | ATPase AAA | 0.68 | BPHYT_RS02970 | | excinuclease ABC subunit A | low | > 109 |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.69 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | 0.62 | 1 |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS09525 | | replication-associated recombination protein A | 0.69 | UW163_RS02345 | | excinuclease ABC subunit UvrA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.57 | HSERO_RS09515 | | ATPase AAA | 0.69 | HSERO_RS19810 | | excinuclease ABC subunit A | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.56 | RS_RS11735 | | replication-associated recombination protein A | 0.69 | RS_RS02080 | | excinuclease ABC subunit UvrA | low | > 80 |
| Dechlorosoma suillum PS | 0.56 | Dsui_1694 | | AAA ATPase | 0.72 | Dsui_1622 | | excinuclease ABC, A subunit | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_00180 | | Recombination protein MgsA | 0.68 | H281DRAFT_01913 | | Excinuclease ABC subunit A | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.56 | ABCV34_RS07220 | | replication-associated recombination protein A | 0.60 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.54 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.71 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | 0.29 | 73 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_02178 | | Replication-associated recombination protein A | 0.75 | MIT1002_00179 | | Excinuclease ABC subunit A | 0.40 | 60 |
| Variovorax sp. SCN45 | 0.54 | GFF6034 | | Replication-associated recombination protein RarA | 0.65 | GFF4944 | | Excinuclease ABC subunit A | low | > 127 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS07835 | | replication-associated recombination protein A | 0.64 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.64 | Ac3H11_4387 | | Excinuclease ABC subunit A | low | > 79 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.70 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | 0.83 | 12 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS17320 | | replication-associated recombination protein A | 0.69 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | 0.22 | 55 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.69 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.52 | LRK55_RS17545 | | replication-associated recombination protein A | 0.69 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | low | > 63 |
| Sinorhizobium meliloti 1021 | 0.48 | SMc01279 | | recombination factor protein RarA | 0.58 | SMc01235 | | excinuclease ABC subunit A | low | > 103 |
| Azospirillum brasilense Sp245 | 0.48 | AZOBR_RS06885 | | ATPase AAA | 0.59 | AZOBR_RS15370 | | excinuclease ABC subunit A | low | > 97 |
| Agrobacterium fabrum C58 | 0.47 | Atu1914 | | ATPase, AAA family protein | 0.59 | Atu1513 | | ABC excinuclease subunit A | 0.27 | 4 |
| Rhizobium sp. OAE497 | 0.47 | ABIE40_RS08045 | | replication-associated recombination protein A | 0.59 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | low | > 107 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01528 | | Replication-associated recombination protein A | 0.60 | MPMX19_01152 | | UvrABC system protein A | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c01930 | | replication-associated recombination protein A | 0.57 | PGA1_c17370 | | uvrABC system protein A | 0.39 | 10 |
| Rhodopseudomonas palustris CGA009 | 0.47 | TX73_016655 | | replication-associated recombination protein A | 0.60 | TX73_014580 | | excinuclease ABC subunit UvrA | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.47 | A4249_RS07890 | | replication-associated recombination protein A | 0.60 | A4249_RS08575 | | excinuclease ABC subunit UvrA | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.65 | GFF2755 | | Excinuclease ABC subunit A | low | > 90 |
| Rhodospirillum rubrum S1H | 0.46 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.61 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | low | > 58 |
| Dinoroseobacter shibae DFL-12 | 0.46 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.60 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | low | > 64 |
| Magnetospirillum magneticum AMB-1 | 0.45 | AMB_RS17620 | | replication-associated recombination protein A | 0.58 | AMB_RS12410 | | excinuclease ABC subunit UvrA | low | > 64 |
| Bosea sp. OAE506 | 0.45 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.57 | ABIE41_RS15100 | | excinuclease ABC subunit UvrA | low | > 77 |
| Caulobacter crescentus NA1000 Δfur | 0.44 | CCNA_01342 | | ATPase, AAA family | 0.58 | CCNA_02673 | | excinuclease ABC subunit A | low | > 67 |
| Caulobacter crescentus NA1000 | 0.44 | CCNA_01342 | | ATPase, AAA family | 0.58 | CCNA_02673 | | excinuclease ABC subunit A | low | > 66 |
| Bacteroides ovatus ATCC 8483 | 0.42 | BACOVA_03971 | | ATPase, AAA family | 0.49 | BACOVA_03703 | | excinuclease ABC, A subunit | 0.35 | 73 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS22400 | | AAA family ATPase | 0.48 | CA265_RS25080 | | excinuclease ABC subunit A | low | > 88 |
| Parabacteroides merdae CL09T00C40 | 0.42 | HMPREF1078_RS15395 | | replication-associated recombination protein A | 0.50 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | low | > 61 |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS16975 | | replication-associated recombination protein A | 0.48 | HMPREF1181_RS15185 | | excinuclease ABC subunit UvrA | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_02215 | | AAA family ATPase | 0.49 | CA264_18100 | | ABC-ATPase UvrA | low | > 74 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.41 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | 0.49 | BT0578 | | excinuclease ABC subunit A (NCBI ptt file) | 0.27 | 55 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.40 | ABZR88_RS20285 | | replication-associated recombination protein A | 0.48 | ABZR88_RS18670 | | excinuclease ABC subunit UvrA | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.40 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.50 | Echvi_1138 | | excinuclease ABC, A subunit | low | > 79 |
| Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS20200 | | replication-associated recombination protein A | 0.49 | ABI39_RS15330 | | excinuclease ABC subunit UvrA | low | > 72 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_02987 | | Replication-associated recombination protein A | 0.68 | MPMX26_02892 | | UvrABC system protein A | low | > 36 |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS06440 | | replication-associated recombination protein A | 0.49 | HMPREF1058_RS01735 | | excinuclease ABC subunit UvrA | low | > 67 |
| Bifidobacterium breve UCC2003 | 0.36 | BBR_RS17330 | | replication-associated recombination protein A | 0.53 | BBR_RS15510 | | excinuclease ABC subunit UvrA | low | > 34 |
| Mycobacterium tuberculosis H37Rv | 0.35 | Rv2559c | | Conserved hypothetical alanine leucine valine rich protein | 0.54 | Rv1638 | | Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA | 0.21 | 52 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.33 | DVU1686 | | ATPase, AAA family (TIGR) | 0.47 | DVU1987 | uvrA | excinuclease ABC, A subunit (TIGR) | low | > 55 |
| Fusobacterium nucleatum SB010 | 0.33 | HUW76_02735 | | replication-associated recombination protein A | 0.53 | HUW76_06660 | | excinuclease ABC subunit UvrA | low | > 35 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | 0.45 | DvMF_3050 | | excinuclease ABC, A subunit (RefSeq) | low | > 51 |
Not shown: 1 genomes with orthologs for Psyr_3177 only; 4 genomes with orthologs for Psyr_4520 only