Conservation of cofitness between Psyr_0471 and Psyr_1227 in Pseudomonas syringae pv. syringae B728a

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0471 coproporphyrinogen III oxidase, anaerobic 1.0 Psyr_1227 Queuosine biosynthesis protein 0.33 11
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0471 coproporphyrinogen III oxidase, anaerobic 1.00 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_2334 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.93 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_08200 coproporphyrinogen III oxidase 0.93 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.35 77
Pseudomonas simiae WCS417 0.81 PS417_26760 oxidase 0.88 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1003 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.93 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.54 3
Pseudomonas fluorescens SBW25 0.81 PFLU_RS28405 radical SAM family heme chaperone HemW 0.89 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS28405 radical SAM family heme chaperone HemW 0.89 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.51 1
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_13390 coproporphyrinogen III oxidase 0.89 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.30 47
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_4593 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.89 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 103
Pseudomonas sp. RS175 0.77 PFR28_04249 Heme chaperone HemW 0.89 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Pseudomonas sp. S08-1 0.74 OH686_11020 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Pseudomonas putida KT2440 0.73 PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) 0.90 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 96
Pseudomonas stutzeri RCH2 0.71 Psest_0276 putative oxygen-independent coproporphyrinogen III oxidase 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_0201 coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 40
Serratia liquefaciens MT49 0.52 IAI46_21435 radical SAM family heme chaperone HemW 0.70 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_02425 YggW family oxidoreductase 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Shewanella sp. ANA-3 0.51 Shewana3_1188 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.71 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.50 37
Pectobacterium carotovorum WPP14 0.51 HER17_RS03785 radical SAM family heme chaperone HemW 0.68 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Shewanella amazonensis SB2B 0.51 Sama_2483 oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) 0.70 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.39 56
Pantoea sp. MT58 0.51 IAI47_03580 radical SAM family heme chaperone HemW 0.69 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_03813 Heme chaperone HemW 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Escherichia coli ECOR38 0.51 HEPCGN_18540 hemW radical SAM family heme chaperone HemW 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Escherichia coli BL21 0.51 ECD_02785 HemN family putative oxidoreductase 0.69 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 61
Dickeya dianthicola 67-19 0.51 HGI48_RS17370 radical SAM family heme chaperone HemW 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_00761 Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR 0.69 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Escherichia fergusonii Becca 0.51 EFB2_00947 Heme chaperone HemW 0.69 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Escherichia coli ECRC62 0.51 BNILDI_09685 hemW radical SAM family heme chaperone HemW 0.69 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia coli ECRC100 0.51 OKFHMN_19235 hemW radical SAM family heme chaperone HemW 0.69 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Escherichia coli ECRC99 0.51 KEDOAH_08905 hemW radical SAM family heme chaperone HemW 0.69 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Escherichia coli ECRC102 0.51 NIAGMN_17000 hemW radical SAM family heme chaperone HemW 0.69 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF3058 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Erwinia tracheiphila SCR3 0.51 LU632_RS05445 hemW radical SAM family heme chaperone HemW 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Escherichia coli ECRC98 0.51 JDDGAC_22865 hemW radical SAM family heme chaperone HemW 0.69 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Enterobacter asburiae PDN3 0.51 EX28DRAFT_2993 putative oxygen-independent coproporphyrinogen III oxidase 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 76
Escherichia coli ECRC101 0.51 MCAODC_09755 hemW radical SAM family heme chaperone HemW 0.69 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Dickeya dianthicola ME23 0.50 DZA65_RS18460 radical SAM family heme chaperone HemW 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia coli ECOR27 0.50 NOLOHH_11105 hemW radical SAM family heme chaperone HemW 0.69 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia coli BW25113 0.50 b2955 yggW coproporphyrinogen III oxidase (NCBI) 0.69 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Shewanella oneidensis MR-1 0.50 SO3359 oxygen-independent coproporphyrinogen III oxidase, putative (NCBI ptt file) 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Escherichia coli Nissle 1917 0.50 ECOLIN_RS16435 radical SAM family heme chaperone HemW 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Shewanella loihica PV-4 0.50 Shew_1131 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.71 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq)
Dickeya dadantii 3937 0.50 DDA3937_RS17325 radical SAM family heme chaperone HemW 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Rahnella sp. WP5 0.50 EX31_RS02710 radical SAM family heme chaperone HemW 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Alteromonas macleodii MIT1002 0.49 MIT1002_00939 Oxygen-independent coproporphyrinogen-III oxidase 1 0.61 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 70
Klebsiella michiganensis M5al 0.49 BWI76_RS24120 YggW family oxidoreductase 0.69 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 92
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS10665 coproporphyrinogen III oxidase 0.55 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase low > 78
Rhodanobacter denitrificans MT42 0.49 LRK55_RS11460 radical SAM family heme chaperone HemW 0.52 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS11735 radical SAM family heme chaperone HemW 0.52 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 59
Lysobacter sp. OAE881 0.48 ABIE51_RS17300 radical SAM family heme chaperone HemW 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS11910 radical SAM family heme chaperone HemW 0.50 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Dechlorosoma suillum PS 0.48 Dsui_0491 putative oxygen-independent coproporphyrinogen III oxidase 0.48 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 51
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.1224.1 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.53 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.51 9
Paraburkholderia graminis OAS925 0.47 ABIE53_003236 putative oxygen-independent coproporphyrinogen III oxidase 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04010 oxygen-independent coproporphyrinogen-3 oxidase 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Ralstonia solanacearum PSI07 0.47 RPSI07_RS13830 oxygen-independent coproporphyrinogen III oxidase-like protein 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 81
Marinobacter adhaerens HP15 0.47 HP15_280 putative oxygen-independent coproporphyrinogen III oxidase 0.64 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS03635 radical SAM family heme chaperone HemW 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.72 85
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_12160 hemW radical SAM family heme chaperone HemW 0.51 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 52
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS04880 coproporphyrinogen III oxidase 0.53 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase low > 128
Variovorax sp. OAS795 0.47 ABID97_RS23630 radical SAM family heme chaperone HemW 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 91
Variovorax sp. SCN45 0.46 GFF2383 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW 0.49 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) low > 127
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS15335 coproporphyrinogen III oxidase 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF3256 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.47 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 90
Castellaniella sp019104865 MT123 0.45 ABCV34_RS03525 radical SAM family heme chaperone HemW 0.54 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS03355 oxygen-independent coproporphyrinogen III oxidase-like protein 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS10365 oxygen-independent coproporphyrinogen III oxidase-like protein 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS15265 radical SAM family heme chaperone HemW 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Ralstonia solanacearum GMI1000 0.44 RS_RS10840 oxygen-independent coproporphyrinogen III oxidase-like protein 0.54 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Acinetobacter radioresistens SK82 0.44 MPMX26_00308 Heme chaperone HemW 0.52 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.59 31
Acidovorax sp. GW101-3H11 0.43 Ac3H11_3672 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.48 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.27 54
Azospirillum sp. SherDot2 0.32 MPMX19_02574 Heme chaperone HemW 0.42 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 112
Azospirillum brasilense Sp245 0.31 AZOBR_RS02195 coproporphyrinogen III oxidase 0.42 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase low > 97
Phaeobacter inhibens DSM 17395 0.30 PGA1_c35050 oxygen-independent coproporphyrinogen III oxidase HemN 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA low > 62
Agrobacterium fabrum C58 0.29 Atu0325 oxygen-independent coproporphyrinogen III oxidase 0.38 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase
Rhizobium sp. OAE497 0.29 ABIE40_RS01625 radical SAM family heme chaperone HemW 0.39 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Dinoroseobacter shibae DFL-12 0.29 Dshi_3460 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.28 SMc01147 coproporphyrinogen III oxidase 0.37 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase low > 103
Bosea sp. OAE506 0.28 ABIE41_RS03305 radical SAM family heme chaperone HemW 0.39 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 77
Rhodospirillum rubrum S1H 0.28 Rru_A3639 Putative oxygen-independent coproporphyrinogen III oxidase (NCBI) 0.39 Rru_A0281 Queuosine biosynthesis protein (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.28 TX73_001700 radical SAM family heme chaperone HemW 0.36 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase 0.37 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Caulobacter crescentus NA1000 0.27 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase 0.37 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 66
Magnetospirillum magneticum AMB-1 0.27 AMB_RS22770 radical SAM protein 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 64
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2382 hemN coproporphyrinogen III oxidase 0.38 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 38
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS12445 radical SAM family heme chaperone HemW 0.42 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_2753 putative oxygen-independent coproporphyrinogen III oxidase 0.38 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 68
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_0628 putative oxygen-independent coproporphyrinogen III oxidase 0.37 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS11035 radical SAM family heme chaperone HemW 0.36 HMPREF1078_RS17105 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_2374 oxygen-independent coproporphyrinogen III oxidase (RefSeq) 0.36 DvMF_2053 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq) low > 51
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_16765 coproporphyrinogen III oxidase 0.38 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS00100 radical SAM family heme chaperone HemW 0.36 ABI39_RS05610 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS07680 radical SAM family heme chaperone HemW 0.36 HMPREF1058_RS11320 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Pedobacter sp. GW460-11-11-14-LB5 0.22 CA265_RS18155 coproporphyrinogen III oxidase 0.36 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Bacteroides stercoris CC31F 0.22 HMPREF1181_RS06440 radical SAM family heme chaperone HemW 0.35 HMPREF1181_RS01705 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Bacteroides thetaiotaomicron VPI-5482 0.21 BT2168 coproporphyrinogen III oxidase (NCBI ptt file) 0.36 BT3214 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS03545 radical SAM family heme chaperone HemW 0.38 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA

Not shown: 2 genomes with orthologs for Psyr_0471 only; 3 genomes with orthologs for Psyr_1227 only