Conservation of cofitness between PP_0850 and PP_5101 in Pseudomonas putida KT2440

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0850 Dual-specificity RNA methyltransferase RlmN 1.0 PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) 0.32 8
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.79 AO356_13390 coproporphyrinogen III oxidase 0.30 17
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.81 Pf6N2E2_4593 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
Pseudomonas sp. RS175 0.88 PFR28_00294 Dual-specificity RNA methyltransferase RlmN 0.80 PFR28_04249 Heme chaperone HemW low > 88
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.80 AO353_08200 coproporphyrinogen III oxidase 0.46 6
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.80 PfGW456L13_1003 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.30 50
Pseudomonas fluorescens SBW25 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.80 PFLU_RS28405 radical SAM family heme chaperone HemW low > 109
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.80 PFLU_RS28405 radical SAM family heme chaperone HemW low > 109
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.81 Pf1N1B4_2334 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
Pseudomonas simiae WCS417 0.87 PS417_23160 50S rRNA methyltransferase 0.79 PS417_26760 oxidase low > 88
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.76 Psyr_0471 coproporphyrinogen III oxidase, anaerobic low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.76 Psyr_0471 coproporphyrinogen III oxidase, anaerobic low > 86
Pseudomonas sp. S08-1 0.85 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.76 OH686_11020 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW low > 80
Pseudomonas stutzeri RCH2 0.84 Psest_1259 23S rRNA m2A2503 methyltransferase 0.75 Psest_0276 putative oxygen-independent coproporphyrinogen III oxidase low > 67
Marinobacter adhaerens HP15 0.66 HP15_1490 conserved hypothetical protein 0.51 HP15_280 putative oxygen-independent coproporphyrinogen III oxidase 0.39 37
Acinetobacter radioresistens SK82 0.60 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN 0.46 MPMX26_00308 Heme chaperone HemW low > 36
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase 0.55 B158DRAFT_0201 coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) low > 40
Lysobacter sp. OAE881 0.56 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 ABIE51_RS17300 radical SAM family heme chaperone HemW low > 62
Escherichia fergusonii Becca 0.56 EFB2_01373 Dual-specificity RNA methyltransferase RlmN 0.54 EFB2_00947 Heme chaperone HemW low > 86
Escherichia coli ECOR38 0.56 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 HEPCGN_18540 hemW radical SAM family heme chaperone HemW low > 85
Escherichia coli BL21 0.56 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.54 ECD_02785 HemN family putative oxidoreductase low > 60
Escherichia coli ECRC98 0.56 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 JDDGAC_22865 hemW radical SAM family heme chaperone HemW
Escherichia coli ECRC62 0.56 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.53 BNILDI_09685 hemW radical SAM family heme chaperone HemW
Escherichia coli ECOR27 0.56 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.53 NOLOHH_11105 hemW radical SAM family heme chaperone HemW low > 57
Escherichia coli ECRC99 0.56 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 KEDOAH_08905 hemW radical SAM family heme chaperone HemW
Escherichia coli ECRC101 0.56 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 MCAODC_09755 hemW radical SAM family heme chaperone HemW
Escherichia coli ECRC102 0.56 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 NIAGMN_17000 hemW radical SAM family heme chaperone HemW
Escherichia coli Nissle 1917 0.56 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 ECOLIN_RS16435 radical SAM family heme chaperone HemW low > 52
Escherichia coli BW25113 0.56 b2517 yfgB predicted enzyme (NCBI) 0.54 b2955 yggW coproporphyrinogen III oxidase (NCBI) low > 76
Escherichia coli ECRC101 0.56 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 OKFHMN_19235 hemW radical SAM family heme chaperone HemW
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.53 OHPLBJKB_00761 Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR 0.62 36
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.53 EX28DRAFT_2993 putative oxygen-independent coproporphyrinogen III oxidase low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.53 MPMX20_03813 Heme chaperone HemW low > 85
Dickeya dadantii 3937 0.55 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.53 DDA3937_RS17325 radical SAM family heme chaperone HemW 0.82 2
Klebsiella michiganensis M5al 0.55 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.53 BWI76_RS24120 YggW family oxidoreductase low > 92
Pectobacterium carotovorum WPP14 0.55 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 HER17_RS03785 radical SAM family heme chaperone HemW low > 75
Dickeya dianthicola ME23 0.54 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.53 DZA65_RS18460 radical SAM family heme chaperone HemW low > 75
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.49 RR42_RS04880 coproporphyrinogen III oxidase
Shewanella oneidensis MR-1 0.54 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) 0.52 SO3359 oxygen-independent coproporphyrinogen III oxidase, putative (NCBI ptt file) 0.21 48
Dickeya dianthicola 67-19 0.54 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 HGI48_RS17370 radical SAM family heme chaperone HemW low > 71
Erwinia tracheiphila SCR3 0.54 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.52 LU632_RS05445 hemW radical SAM family heme chaperone HemW low > 74
Rahnella sp. WP5 0.54 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.52 EX31_RS02710 radical SAM family heme chaperone HemW low > 89
Serratia liquefaciens MT49 0.54 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 IAI46_21435 radical SAM family heme chaperone HemW low > 86
Shewanella sp. ANA-3 0.54 Shewana3_1226 hypothetical protein (RefSeq) 0.52 Shewana3_1188 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) low > 73
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.47 ABZR87_RS15265 radical SAM family heme chaperone HemW low > 80
Dechlorosoma suillum PS 0.54 Dsui_3145 23S rRNA m2A2503 methyltransferase 0.51 Dsui_0491 putative oxygen-independent coproporphyrinogen III oxidase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.53 GFF3058 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB low > 78
Ralstonia solanacearum GMI1000 0.54 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.47 RS_RS10840 oxygen-independent coproporphyrinogen III oxidase-like protein low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.48 RPSI07_RS13830 oxygen-independent coproporphyrinogen III oxidase-like protein low > 81
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 RALBFv3_RS03355 oxygen-independent coproporphyrinogen III oxidase-like protein
Ralstonia solanacearum UW163 0.54 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 UW163_RS10365 oxygen-independent coproporphyrinogen III oxidase-like protein
Rhodanobacter denitrificans MT42 0.53 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 LRK55_RS11460 radical SAM family heme chaperone HemW 0.65 12
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 LRK54_RS11735 radical SAM family heme chaperone HemW low > 59
Shewanella amazonensis SB2B 0.53 Sama_2368 hypothetical protein (RefSeq) 0.54 Sama_2483 oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) 0.52 17
Shewanella loihica PV-4 0.53 Shew_1287 hypothetical protein (RefSeq) 0.52 Shew_1131 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) low > 60
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.50 Xcc-8004.1224.1 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB low > 74
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.48 OKGIIK_12160 hemW radical SAM family heme chaperone HemW low > 52
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 ABZR86_RS11910 radical SAM family heme chaperone HemW low > 74
Pantoea sp. MT58 0.53 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.52 IAI47_03580 radical SAM family heme chaperone HemW low > 76
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 CSW01_02425 YggW family oxidoreductase low > 62
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 QEN71_RS03635 radical SAM family heme chaperone HemW 0.65 78
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase 0.48 H281DRAFT_04010 oxygen-independent coproporphyrinogen-3 oxidase
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN 0.48 BPHYT_RS15335 coproporphyrinogen III oxidase 0.48 8
Paraburkholderia graminis OAS925 0.52 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase 0.49 ABIE53_003236 putative oxygen-independent coproporphyrinogen III oxidase 0.37 27
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14810 50S rRNA methyltransferase 0.51 HSERO_RS10665 coproporphyrinogen III oxidase
Acidovorax sp. GW101-3H11 0.51 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.42 Ac3H11_3672 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB low > 79
Alteromonas macleodii MIT1002 0.50 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN 0.54 MIT1002_00939 Oxygen-independent coproporphyrinogen-III oxidase 1 low > 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.48 GFF3256 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB low > 90
Variovorax sp. OAS795 0.49 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.47 ABID97_RS23630 radical SAM family heme chaperone HemW low > 91
Variovorax sp. SCN45 0.49 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.48 GFF2383 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW low > 127
Castellaniella sp019104865 MT123 0.49 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.47 ABCV34_RS03525 radical SAM family heme chaperone HemW low > 48
Azospirillum brasilense Sp245 0.46 AZOBR_RS00800 50S rRNA methyltransferase 0.32 AZOBR_RS02195 coproporphyrinogen III oxidase low > 97
Azospirillum sp. SherDot2 0.46 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN 0.33 MPMX19_02574 Heme chaperone HemW low > 112
Phaeobacter inhibens DSM 17395 0.44 PGA1_c36240 ribosomal RNA large subunit methyltransferase N 0.30 PGA1_c35050 oxygen-independent coproporphyrinogen III oxidase HemN low > 62
Agrobacterium fabrum C58 0.43 Atu2673 hypothetical protein 0.29 Atu0325 oxygen-independent coproporphyrinogen III oxidase
Dinoroseobacter shibae DFL-12 0.43 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq) 0.32 Dshi_3460 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) low > 64
Caulobacter crescentus NA1000 0.42 CCNA_00133 radical SAM family enzyme 0.25 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase low > 66
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00133 radical SAM family enzyme 0.25 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase low > 67
Rhodopseudomonas palustris CGA009 0.42 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.30 TX73_001700 radical SAM family heme chaperone HemW
Magnetospirillum magneticum AMB-1 0.42 AMB_RS05715 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.26 AMB_RS22770 radical SAM protein low > 64
Sinorhizobium meliloti 1021 0.41 SMc03831 hypothetical protein 0.29 SMc01147 coproporphyrinogen III oxidase low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS12865 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.26 A4249_RS12445 radical SAM family heme chaperone HemW low > 48
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.27 Ga0059261_2753 putative oxygen-independent coproporphyrinogen III oxidase low > 68
Bosea sp. OAE506 0.41 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.29 ABIE41_RS03305 radical SAM family heme chaperone HemW low > 77
Rhizobium sp. OAE497 0.41 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.29 ABIE40_RS01625 radical SAM family heme chaperone HemW
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1758 hypothetical protein 0.28 Synpcc7942_2382 hemN coproporphyrinogen III oxidase low > 38
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_1431 radical SAM enzyme, Cfr family (RefSeq) 0.25 DvMF_2374 oxygen-independent coproporphyrinogen III oxidase (RefSeq) low > 51
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15910 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.25 CA264_16765 coproporphyrinogen III oxidase low > 74
Bacteroides ovatus ATCC 8483 0.31 BACOVA_05204 23S rRNA m2A2503 methyltransferase 0.18 BACOVA_03177 putative oxygen-independent coproporphyrinogen III oxidase low > 94
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS05775 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.21 HMPREF1181_RS06440 radical SAM family heme chaperone HemW low > 56
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS12945 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.24 ABI39_RS00100 radical SAM family heme chaperone HemW low > 72
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS19115 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.23 CA265_RS18155 coproporphyrinogen III oxidase low > 88
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS17025 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.24 HMPREF1058_RS07680 radical SAM family heme chaperone HemW low > 67
Bacteroides thetaiotaomicron VPI-5482 0.30 BT4372 conserved hypothetical protein (NCBI ptt file) 0.22 BT2168 coproporphyrinogen III oxidase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS14530 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.23 HMPREF1078_RS11035 radical SAM family heme chaperone HemW low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_0755 23S rRNA m2A2503 methyltransferase 0.24 Echvi_0628 putative oxygen-independent coproporphyrinogen III oxidase low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS00655 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.21 ABZR88_RS03545 radical SAM family heme chaperone HemW low > 71
Fusobacterium nucleatum SB010 0.29 HUW76_07445 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.25 HUW76_07285 radical SAM family heme chaperone HemW low > 35
Bifidobacterium breve UCC2003 0.27 BBR_RS16105 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.21 BBR_RS15235 coproporphyrinogen III oxidase low > 34

Not shown: 1 genomes with orthologs for PP_0850 only; 2 genomes with orthologs for PP_5101 only