Conservation of cofitness between PP_4700 and PP_1988 in Pseudomonas putida KT2440

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4700 pantothenate synthetase 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.49 17
Pseudomonas sp. RS175 0.84 PFR28_03722 Pantothenate synthetase 0.93 PFR28_02821 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_16055 pantoate--beta-alanine ligase 0.94 AO356_21415 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_5152 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_14380 pantoate--beta-alanine ligase 0.92 AO353_20635 3-isopropylmalate dehydrogenase low > 101
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1520 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2853 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Pseudomonas simiae WCS417 0.80 PS417_23915 pantoate--beta-alanine ligase 0.93 PS417_18585 3-isopropylmalate dehydrogenase low > 88
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS25755 pantoate--beta-alanine ligase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.80 PFLU_RS25755 pantoate--beta-alanine ligase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas sp. S08-1 0.78 OH686_17240 pantoate--beta-alanine ligase 0.87 OH686_04470 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_0827 pantothenate synthetase 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.64 28
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_0827 pantothenate synthetase 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.70 30
Pseudomonas stutzeri RCH2 0.71 Psest_0995 pantoate--beta-alanine ligase 0.87 Psest_2589 3-isopropylmalate dehydrogenase — —
Marinobacter adhaerens HP15 0.63 HP15_323 pantothenate synthetase 0.73 HP15_1832 3-isopropylmalate dehydrogenase — —
Shewanella amazonensis SB2B 0.55 Sama_0775 panC pantoate--beta-alanine ligase (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) — —
Shewanella oneidensis MR-1 0.54 SO0869 panC pantoate--beta-alanine ligase (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.54 MIT1002_03695 Pantothenate synthetase 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase — —
Shewanella sp. ANA-3 0.54 Shewana3_3409 panC pantoate--beta-alanine ligase (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) — —
Shewanella loihica PV-4 0.53 Shew_3134 pantoate--beta-alanine ligase (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) — —
Serratia liquefaciens MT49 0.53 IAI46_21245 pantoate--beta-alanine ligase 0.53 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Escherichia fergusonii Becca 0.53 EFB2_03911 Pantothenate synthetase 0.54 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECOR38 0.52 HEPCGN_08380 panC pantoate--beta-alanine ligase 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Escherichia coli ECRC101 0.52 OKFHMN_10405 panC pantoate--beta-alanine ligase 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.52 MCAODC_00920 panC pantoate--beta-alanine ligase 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC99 0.52 KEDOAH_17750 panC pantoate--beta-alanine ligase 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC98 0.52 JDDGAC_14000 panC pantoate--beta-alanine ligase 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC102 0.52 NIAGMN_08255 panC pantoate--beta-alanine ligase 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli BL21 0.52 ECD_00132 pantothenate synthetase 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 60
Escherichia coli ECOR27 0.52 NOLOHH_02750 panC pantoate--beta-alanine ligase 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli ECRC62 0.52 BNILDI_08920 panC pantoate--beta-alanine ligase 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_03528 Pantothenate synthetase 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli BW25113 0.52 b0133 panC pantoate--beta-alanine ligase (NCBI) 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.35 47
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0062 pantoate--beta-alanine ligase 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pectobacterium carotovorum WPP14 0.51 HER17_RS05555 pantoate--beta-alanine ligase 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase low > 75
Dickeya dianthicola ME23 0.51 DZA65_RS17160 pantoate--beta-alanine ligase 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.77 38
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF92 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Klebsiella michiganensis M5al 0.51 BWI76_RS04990 pantoate--beta-alanine ligase 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase low > 92
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS00820 pantoate--beta-alanine ligase 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase — —
Dickeya dadantii 3937 0.51 DDA3937_RS15960 pantoate--beta-alanine ligase 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Erwinia tracheiphila SCR3 0.50 LU632_RS20105 panC pantoate--beta-alanine ligase 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase low > 74
Rhodanobacter denitrificans MT42 0.50 LRK55_RS14835 pantoate--beta-alanine ligase 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Dickeya dianthicola 67-19 0.50 HGI48_RS16075 pantoate--beta-alanine ligase 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.78 48
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_03130 pantoate--beta-alanine ligase 0.53 CSW01_12600 3-isopropylmalate dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.50 AMB_RS22115 pantoate--beta-alanine ligase 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS15120 pantoate--beta-alanine ligase 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase — —
Pantoea sp. MT58 0.50 IAI47_15660 pantoate--beta-alanine ligase 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.37 43
Rahnella sp. WP5 0.49 EX31_RS03285 pantoate--beta-alanine ligase 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase low > 89
Acinetobacter radioresistens SK82 0.49 MPMX26_00546 Pantothenate synthetase 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_03890 panC pantoate--beta-alanine ligase 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Enterobacter asburiae PDN3 0.48 EX28DRAFT_3729 pantoate--beta-alanine ligase 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_00826 Pantothenate synthetase 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase low > 85
Rhodospirillum rubrum S1H 0.46 Rru_A3320 Cytidyltransferase-related (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) — —
Lysobacter sp. OAE881 0.46 ABIE51_RS08030 pantoate--beta-alanine ligase 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_2453 pantoate--beta-alanine ligase 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase — —
Dechlorosoma suillum PS 0.45 Dsui_1470 pantoate--beta-alanine ligase 0.68 Dsui_3198 3-isopropylmalate dehydrogenase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS09715 pantoate--beta-alanine ligase 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase low > 97
Ralstonia solanacearum GMI1000 0.44 RS_RS11985 pantoate--beta-alanine ligase 0.64 RS_RS09990 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum UW163 0.44 UW163_RS09235 pantoate--beta-alanine ligase 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Sinorhizobium meliloti 1021 0.44 SMc01880 pantoate--beta-alanine ligase 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.69 17
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS04435 pantoate--beta-alanine ligase 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase — —
Variovorax sp. OAS795 0.44 ABID97_RS07430 pantoate--beta-alanine ligase 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS15520 pantoate--beta-alanine ligase 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.43 Dshi_2952 pantoate--beta-alanine ligase (RefSeq) 0.58 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_00150 pantothenate synthetase 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase — —
Variovorax sp. SCN45 0.43 GFF2578 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.52 14
Ralstonia solanacearum PSI07 0.43 RPSI07_RS12935 pantoate--beta-alanine ligase 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase — —
Agrobacterium fabrum C58 0.43 Atu3482 pantoate--beta-alanine ligase 0.57 Atu2791 3-isopropylmalate dehydrogenase 0.90 7
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS25065 pantoate--beta-alanine ligase 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 0.43 CCNA_02247 pantoate-beta-alanine ligase 0.51 CCNA_00193 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_02247 pantoate-beta-alanine ligase 0.51 CCNA_00193 3-isopropylmalate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS00030 pantoate--beta-alanine ligase 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS16055 pantothenate synthetase 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS06825 pantoate--beta-alanine ligase 0.43 A4249_RS09995 3-isopropylmalate dehydrogenase — —
Bosea sp. OAE506 0.43 ABIE41_RS14875 pantoate--beta-alanine ligase 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Rhizobium sp. OAE497 0.42 ABIE40_RS09460 pantoate--beta-alanine ligase 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase low > 107
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3051.1 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Paraburkholderia graminis OAS925 0.41 ABIE53_001260 pantoate--beta-alanine ligase 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS14585 pantoate--beta-alanine ligase 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS04925 pantothenate synthetase 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.40 TX73_016310 pantoate--beta-alanine ligase 0.53 TX73_001175 3-isopropylmalate dehydrogenase — —
Azospirillum sp. SherDot2 0.40 MPMX19_04465 Pantothenate synthetase 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase 0.64 28
Phaeobacter inhibens DSM 17395 0.40 PGA1_c32040 pantothenate synthetase PanC 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_3840 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.44 63
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2942 panC pantoate--beta-alanine ligase (RefSeq) 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) — —
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS06090 pantoate--beta-alanine ligase 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase — —
Bacteroides ovatus ATCC 8483 0.38 BACOVA_05108 pantoate--beta-alanine ligase 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase — —
Parabacteroides merdae CL09T00C40 0.38 HMPREF1078_RS14680 pantoate--beta-alanine ligase 0.45 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.38 BT4308 pantoate--beta-alanine ligase (NCBI ptt file) 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_17615 pantoate--beta-alanine ligase 0.43 CA264_09445 3-isopropylmalate dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.37 ABZR88_RS18500 pantoate--beta-alanine ligase 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.37 DVU2448 panC pantoate--beta-alanine ligase (TIGR) 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) low > 55
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1220 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS18260 pantoate--beta-alanine ligase 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase — —
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS14555 pantoate--beta-alanine ligase 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase — —
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS22700 pantoate--beta-alanine ligase 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_1527 pantoate--beta-alanine ligase 0.46 Echvi_2062 3-isopropylmalate dehydrogenase — —
Mycobacterium tuberculosis H37Rv 0.33 Rv3602c Pantoate--beta-alanine ligase PanC (pantothenate synthetase) (pantoate activating enzyme) 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) — —

Not shown: 0 genomes with orthologs for PP_4700 only; 5 genomes with orthologs for PP_1988 only