Conservation of cofitness between PP_4787 and PP_0832 in Pseudomonas putida KT2440

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4787 putative protein with nucleoside triphosphate hydrolase domain 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.26 20
Pseudomonas sp. RS175 0.89 PFR28_03849 PhoH-like protein 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_15405 ATP-binding protein 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 104
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_5017 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.22 32
Pseudomonas fluorescens SBW25 0.88 PFLU_RS26560 PhoH family protein 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS26560 PhoH family protein 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_2711 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas simiae WCS417 0.87 PS417_24630 ATP-binding protein 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1379 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.30 25
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_06380 ATP-binding protein 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.18 75
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_4346 PhoH-like protein 0.89 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_4346 PhoH-like protein 0.89 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas sp. S08-1 0.84 OH686_09220 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Pseudomonas stutzeri RCH2 0.84 Psest_0531 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.21 30
Marinobacter adhaerens HP15 0.64 HP15_2467 PhoH family protein 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_0098 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 40
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS09920 PhoH family protein 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Lysobacter sp. OAE881 0.61 ABIE51_RS15500 PhoH family protein 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS13720 PhoH family protein 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 59
Rhodanobacter denitrificans MT42 0.61 LRK55_RS13460 PhoH family protein 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 63
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_02965 phoH Phosphate starvation-inducible protein PhoH, putative ATPase 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 52
Erwinia tracheiphila SCR3 0.59 LU632_RS16310 PhoH family protein 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.2223.1 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 74
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_04910 PhoH family protein 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Acinetobacter radioresistens SK82 0.58 MPMX26_02668 PhoH-like protein 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 36
Shewanella amazonensis SB2B 0.58 Sama_2576 PhoH family protein (RefSeq) 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq)
Alteromonas macleodii MIT1002 0.57 MIT1002_01479 PhoH-like protein 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Escherichia coli ECRC101 0.57 OKFHMN_07230 ybeZ PhoH-like protein 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Escherichia coli ECOR27 0.57 NOLOHH_23610 ybeZ PhoH-like protein 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 57
Escherichia coli ECRC98 0.57 JDDGAC_10875 ybeZ PhoH-like protein 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Escherichia fergusonii Becca 0.57 EFB2_03439 PhoH-like protein 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Escherichia coli ECRC99 0.57 KEDOAH_20740 ybeZ PhoH-like protein 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Escherichia coli ECRC62 0.57 BNILDI_21615 ybeZ PhoH-like protein 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_03052 PhoH-like protein 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Escherichia coli ECOR38 0.57 HEPCGN_01000 ybeZ PhoH-like protein 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 85
Escherichia coli ECRC102 0.57 NIAGMN_05285 ybeZ PhoH-like protein 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Escherichia coli Nissle 1917 0.57 ECOLIN_RS03550 PhoH family protein 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Escherichia coli BL21 0.57 ECD_00628 heat shock protein, putative NTPase; PhoH-like protein 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 60
Escherichia coli BW25113 0.57 b0660 ybeZ predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Shewanella sp. ANA-3 0.57 Shewana3_1007 PhoH family protein (RefSeq) 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Escherichia coli ECRC101 0.57 MCAODC_26445 ybeZ PhoH-like protein 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF4577 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Pectobacterium carotovorum WPP14 0.57 HER17_RS15170 PhoH family protein 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Enterobacter sp. TBS_079 0.57 MPMX20_01310 PhoH-like protein 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Dickeya dianthicola ME23 0.56 DZA65_RS06635 PhoH family protein 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Pantoea sp. MT58 0.56 IAI47_13950 PhoH family protein 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Dickeya dianthicola 67-19 0.56 HGI48_RS06290 PhoH family protein 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 71
Dickeya dadantii 3937 0.56 DDA3937_RS06245 PhoH family protein 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Shewanella oneidensis MR-1 0.56 SO1180 PhoH family protein (NCBI ptt file) 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2311 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.50 69
Klebsiella michiganensis M5al 0.56 BWI76_RS08130 nucleoside triphosphate hydrolase 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Shewanella loihica PV-4 0.56 Shew_2924 PhoH family protein (RefSeq) 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq)
Serratia liquefaciens MT49 0.56 IAI46_06015 PhoH family protein 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Rahnella sp. WP5 0.55 EX31_RS23195 PhoH family protein 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Ralstonia solanacearum GMI1000 0.53 RS_RS02640 PhoH family protein 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS16540 phosphate starvation protein PhoH 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04240 phosphate starvation-inducible protein PhoH 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS11820 PhoH family protein 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS07775 PhoH family protein 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Paraburkholderia graminis OAS925 0.52 ABIE53_003480 phosphate starvation-inducible PhoH-like protein 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 113
Ralstonia solanacearum UW163 0.52 UW163_RS01765 PhoH family protein 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Castellaniella sp019104865 MT123 0.52 ABCV34_RS15340 PhoH family protein 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS03610 phosphate starvation protein PhoH 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase low > 78
Ralstonia solanacearum PSI07 0.51 RPSI07_RS21385 PhoH family protein 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 81
Acidovorax sp. GW101-3H11 0.51 Ac3H11_4682 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 79
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS02850 phoH-like protein 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase low > 128
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS02190 PhoH family protein 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1667 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 90
Variovorax sp. OAS795 0.51 ABID97_RS24925 PhoH family protein 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 91
Variovorax sp. SCN45 0.50 GFF2072 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) low > 127
Dechlorosoma suillum PS 0.50 Dsui_1195 phosphate starvation-inducible protein PhoH, predicted ATPase 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 51
Dinoroseobacter shibae DFL-12 0.45 Dshi_1016 PhoH family protein (RefSeq) 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.44 SMc01114 phoH-like protein 0.39 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase low > 103
Rhizobium sp. OAE497 0.44 ABIE40_RS01700 PhoH family protein 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 107
Phaeobacter inhibens DSM 17395 0.43 PGA1_c04740 phoH-like protein 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA low > 62
Azospirillum brasilense Sp245 0.43 AZOBR_RS01470 phosphate starvation protein PhoH 0.42 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase low > 97
Agrobacterium fabrum C58 0.43 Atu0357 phosphate starvation inducible protein 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase low > 89
Azospirillum sp. SherDot2 0.42 MPMX19_02512 PhoH-like protein 0.42 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 112
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_1775 phosphate starvation-induced protein 0.37 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 38
Desulfovibrio vulgaris Miyazaki F 0.42 DvMF_0575 PhoH family protein (RefSeq) 0.37 DvMF_2053 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq) low > 51
Rhodospirillum rubrum S1H 0.40 Rru_A3771 PhoH-like protein (NCBI) 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.40 AMB_RS22590 PhoH family protein 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 64
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS16765 PhoH family protein 0.37 HMPREF1058_RS11320 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS12680 PhoH family protein 0.37 ABI39_RS05610 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU1881 phoH phoH family protein (TIGR) 0.41 DVU3351 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_0347 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.38 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Rhodopseudomonas palustris CGA009 0.39 TX73_002320 PhoH family protein 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Bosea sp. OAE506 0.39 ABIE41_RS04500 PhoH family protein 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 77
Bacteroides thetaiotaomicron VPI-5482 0.38 BT4218 phosphate starvation-inducible protein, PhoH (NCBI ptt file) 0.36 BT3214 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file)
Bacteroides ovatus ATCC 8483 0.38 BACOVA_05069 PhoH family protein 0.36 BACOVA_02915 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS06305 PhoH family protein 0.35 HMPREF1181_RS01705 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_1608 Phosphate starvation-inducible protein PhoH, predicted ATPase 0.37 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 68
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_01950 PhoH family protein 0.39 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS09025 PhoH family protein 0.37 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS09255 PhoH family protein 0.39 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_00053 phosphate starvation-inducible protein PhoH 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Caulobacter crescentus NA1000 0.36 CCNA_00053 phosphate starvation-inducible protein PhoH 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS14715 PhoH family protein 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48

Not shown: 2 genomes with orthologs for PP_4787 only; 2 genomes with orthologs for PP_0832 only