Conservation of cofitness between PP_4722 and PP_0832 in Pseudomonas putida KT2440

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4722 Transcription elongation factor GreA 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.43 8
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3363 Transcription elongation factor GreA 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_07475 transcription elongation factor GreA 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pseudomonas sp. RS175 0.85 PFR28_00078 Transcription elongation factor GreA 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_4190 transcription elongation factor GreA 0.89 Psyr_1227 Queuosine biosynthesis protein — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_4190 transcription elongation factor GreA 0.89 Psyr_1227 Queuosine biosynthesis protein — —
Pseudomonas sp. S08-1 0.81 OH686_17085 Transcription elongation factor GreA 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05625 transcription elongation factor GreA 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.24 96
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_1171 Transcription elongation factor GreA 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) — —
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS25875 transcription elongation factor GreA 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens SBW25 0.80 PFLU_RS25875 transcription elongation factor GreA 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_5098 Transcription elongation factor GreA 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) — —
Pseudomonas simiae WCS417 0.79 PS417_24035 transcription elongation factor GreA 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase — —
Pseudomonas stutzeri RCH2 0.77 Psest_0969 transcription elongation factor GreA 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Shewanella loihica PV-4 0.61 Shew_2837 transcription elongation factor GreA (RefSeq) 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) — —
Shewanella sp. ANA-3 0.61 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF2922 Transcription elongation factor GreA 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Escherichia coli ECRC98 0.60 JDDGAC_21670 greA transcription elongation factor GreA 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECOR38 0.60 HEPCGN_16920 greA transcription elongation factor GreA 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC102 0.60 NIAGMN_15805 greA transcription elongation factor GreA 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC101 0.60 OKFHMN_18045 greA transcription elongation factor GreA 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00519 Transcription elongation factor GreA 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 46
Escherichia coli ECRC101 0.60 MCAODC_08565 greA transcription elongation factor GreA 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BL21 0.60 ECD_03046 transcript cleavage factor 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 60
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18320 transcription elongation factor GreA 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia fergusonii Becca 0.60 EFB2_00642 Transcription elongation factor GreA 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Escherichia coli ECRC62 0.60 BNILDI_01690 greA transcription elongation factor GreA 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECOR27 0.60 NOLOHH_09845 greA transcription elongation factor GreA 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC99 0.60 KEDOAH_10105 greA transcription elongation factor GreA 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BW25113 0.60 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Shewanella oneidensis MR-1 0.60 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.60 MIT1002_01468 Transcript cleavage factor GreA 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 70
Klebsiella michiganensis M5al 0.59 BWI76_RS25160 transcription elongation factor GreA 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 92
Enterobacter sp. TBS_079 0.59 MPMX20_04085 Transcription elongation factor GreA 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Marinobacter adhaerens HP15 0.59 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Shewanella amazonensis SB2B 0.59 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 62
Enterobacter asburiae PDN3 0.59 EX28DRAFT_3232 transcription elongation factor GreA 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 76
Pantoea sp. MT58 0.58 IAI47_17080 transcription elongation factor GreA 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0617 transcription elongation factor GreA 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 40
Pectobacterium carotovorum WPP14 0.57 HER17_RS18330 transcription elongation factor GreA 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Dickeya dadantii 3937 0.57 DDA3937_RS03015 transcription elongation factor GreA 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Dickeya dianthicola ME23 0.57 DZA65_RS03180 transcription elongation factor GreA 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS03185 transcription elongation factor GreA 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 71
Serratia liquefaciens MT49 0.56 IAI46_01880 transcription elongation factor GreA 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 4
Acinetobacter radioresistens SK82 0.56 MPMX26_00765 Transcription elongation factor GreA 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 36
Rahnella sp. WP5 0.56 EX31_RS08595 transcription elongation factor GreA 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Erwinia tracheiphila SCR3 0.54 LU632_RS21165 greA transcription elongation factor GreA 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03330 transcription elongation factor GreA 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.42 47
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2911.1 Transcription elongation factor GreA 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 74
Lysobacter sp. OAE881 0.51 ABIE51_RS11610 transcription elongation factor GreA 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Dinoroseobacter shibae DFL-12 0.50 Dshi_3076 transcription elongation factor GreA (RefSeq) 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.49 Ac3H11_437 Transcription elongation factor GreA 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 79
Dechlorosoma suillum PS 0.49 Dsui_3063 transcription elongation factor GreA 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 51
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS00695 transcription elongation factor GreA 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS06930 transcription elongation factor GreA 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS14135 transcription elongation factor GreA 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF4897 Transcription elongation factor GreA 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 90
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04785 transcription elongation factor GreA 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 153
Azospirillum sp. SherDot2 0.47 MPMX19_02300 Transcription elongation factor GreA 0.42 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 112
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS13505 transcription elongation factor GreA 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15260 transcription elongation factor GreA 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 81
Phaeobacter inhibens DSM 17395 0.47 PGA1_c03290 transcription elongation factor GreA 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA low > 62
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14185 transcription elongation factor GreA 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.32 61
Paraburkholderia graminis OAS925 0.46 ABIE53_003003 transcription elongation factor GreA 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.53 18
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04404 GreA/GreB family elongation factor 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Ralstonia solanacearum UW163 0.46 UW163_RS15495 transcription elongation factor GreA 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02185 transcription elongation factor GreA 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Caulobacter crescentus NA1000 0.46 CCNA_02941 transcription elongation factor greA 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 66
Ralstonia solanacearum GMI1000 0.46 RS_RS07635 transcription elongation factor GreA 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Azospirillum brasilense Sp245 0.46 AZOBR_RS12900 transcription elongation factor GreA 0.42 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_02941 transcription elongation factor greA 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15540 transcription elongation factor GreA 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Variovorax sp. SCN45 0.45 GFF374 Transcription elongation factor GreA 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) low > 127
Desulfovibrio vulgaris Hildenborough JW710 0.45 DVU3245 greA transcription elongation factor GreA (TIGR) 0.41 DVU3351 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) 0.50 5
Sinorhizobium meliloti 1021 0.45 SMc01218 transcription elongation factor GreA 0.39 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase — —
Magnetospirillum magneticum AMB-1 0.45 AMB_RS03610 transcription elongation factor GreA 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 64
Bosea sp. OAE506 0.45 ABIE41_RS11905 transcription elongation factor GreA 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Agrobacterium fabrum C58 0.45 Atu2182 transcription elongation facto 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase — —
Variovorax sp. OAS795 0.45 ABID97_RS17070 transcription elongation factor GreA 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.29 55
Rhodopseudomonas palustris CGA009 0.42 TX73_021095 transcription elongation factor GreA 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Desulfovibrio vulgaris Miyazaki F 0.42 DvMF_0383 greA transcription elongation factor GreA (RefSeq) 0.37 DvMF_2053 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq) low > 51
Rhodospirillum rubrum S1H 0.41 Rru_A2887 GreA/GreB family elongation factor (NCBI) 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) low > 58
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_07290 greA transcription elongation factor GreA 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 52
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0008 transcription elongation factor GreA 0.37 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Rhodanobacter denitrificans MT42 0.39 LRK55_RS17860 transcription elongation factor GreA 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 63
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS18005 transcription elongation factor GreA 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 59
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS05595 transcription elongation factor GreA 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS17725 transcription elongation factor GreA 0.36 HMPREF1078_RS17105 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS23190 transcription elongation factor GreA 0.37 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS00130 transcription elongation factor GreA 0.39 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Bacteroides thetaiotaomicron VPI-5482 0.34 BT2565 transcription elongation factor greA (NCBI ptt file) 0.36 BT3214 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS12565 transcription elongation factor GreA 0.37 HMPREF1058_RS11320 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS04145 transcription elongation factor GreA 0.37 ABI39_RS05610 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Bacteroides ovatus ATCC 8483 0.34 BACOVA_01643 prokaryotic transcription elongation factor, GreA/GreB domain protein 0.36 BACOVA_02915 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS00805 transcription elongation factor GreA 0.35 HMPREF1181_RS01705 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_0180 transcription elongation factor GreA 0.38 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_03870 transcription elongation factor GreA 0.39 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —

Not shown: 0 genomes with orthologs for PP_4722 only; 3 genomes with orthologs for PP_0832 only