Conservation of cofitness between PP_0832 and PP_0674 in Pseudomonas putida KT2440

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.0 PP_0674 ADP/ATP ratio sensor and inhibitor of translation 0.44 5
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.96 AO353_14030 ABC transporter ATP-binding protein 0.30 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.96 Psyr_4264 ABC transporter low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.96 Psyr_4264 ABC transporter low > 86
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.96 PfGW456L13_1453 Glutathione-regulated potassium-efflux system ATP-binding protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.96 PFLU_RS26180 energy-dependent translational throttle protein EttA low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.96 PFLU_RS26180 energy-dependent translational throttle protein EttA low > 109
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.97 AO356_15735 ABC transporter ATP-binding protein 0.32 33
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.98 Pf6N2E2_5084 Glutathione-regulated potassium-efflux system ATP-binding protein 0.25 88
Pseudomonas sp. RS175 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.98 PFR28_03784 Energy-dependent translational throttle protein EttA low > 88
Pseudomonas simiae WCS417 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.96 PS417_24265 ABC transporter ATP-binding protein low > 88
Pseudomonas sp. S08-1 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.94 OH686_16240 Energy-dependent translational throttle protein EttA low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.94 Psest_3433 ATP-binding cassette protein, ChvD family low > 67
Shewanella oneidensis MR-1 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.74 SO3472 ABC transporter, ATP-binding protein (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.74 IAI46_02965 energy-dependent translational throttle protein EttA low > 86
Shewanella loihica PV-4 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.74 Shew_1183 putative ABC transporter ATP-binding protein (RefSeq)
Rahnella sp. WP5 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 EX31_RS04000 energy-dependent translational throttle protein EttA low > 89
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 EX28DRAFT_3601 ATP-binding cassette protein, ChvD family low > 76
Dickeya dianthicola ME23 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 DZA65_RS19530 energy-dependent translational throttle protein EttA low > 75
Shewanella sp. ANA-3 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.74 Shewana3_1093 putative ABC transporter ATP-binding protein (RefSeq) 0.60 23
Dickeya dianthicola 67-19 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 HGI48_RS18390 energy-dependent translational throttle protein EttA low > 71
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.74 BWI76_RS04175 energy-dependent translational throttle protein EttA low > 92
Pantoea sp. MT58 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.74 IAI47_16325 energy-dependent translational throttle protein EttA low > 76
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.76 ECD_04267 energy-dependent translational throttle A 0.54 26
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 NIAGMN_09025 ettA energy-dependent translational throttle protein EttA
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 BNILDI_08090 ettA energy-dependent translational throttle protein EttA
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 MCAODC_01690 ettA energy-dependent translational throttle protein EttA
Dickeya dadantii 3937 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 DDA3937_RS18460 energy-dependent translational throttle protein EttA low > 74
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 KEDOAH_16980 ettA energy-dependent translational throttle protein EttA
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.76 b4391 yjjK fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) low > 76
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 OKFHMN_11175 ettA energy-dependent translational throttle protein EttA
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 NOLOHH_03505 ettA energy-dependent translational throttle protein EttA low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.76 OHPLBJKB_03670 Energy-dependent translational throttle protein EttA low > 73
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 JDDGAC_14770 ettA energy-dependent translational throttle protein EttA
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.76 EFB2_04053 Energy-dependent translational throttle protein EttA low > 86
Enterobacter sp. TBS_079 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 MPMX20_00698 Energy-dependent translational throttle protein EttA 0.26 50
Escherichia coli ECOR38 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 HEPCGN_09180 ettA energy-dependent translational throttle protein EttA low > 85
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.76 ECOLIN_RS25205 energy-dependent translational throttle protein EttA
Erwinia tracheiphila SCR3 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.73 LU632_RS02565 ettA energy-dependent translational throttle protein EttA 0.48 20
Pectobacterium carotovorum WPP14 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 HER17_RS02745 energy-dependent translational throttle protein EttA low > 75
Shewanella amazonensis SB2B 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.73 Sama_1013 putative ABC transporter ATP-binding protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.73 CSW01_03650 energy-dependent translational throttle protein EttA low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.75 GFF1059 ABC transporter, ATP-binding protein 0.80 7
Marinobacter adhaerens HP15 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.77 HP15_488 ABC transporter ATP-binding protein-like protein low > 73
Alteromonas macleodii MIT1002 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.71 MIT1002_02704 putative ABC transporter ATP-binding protein low > 70
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.71 B158DRAFT_0881 ATP-binding cassette protein, ChvD family low > 40
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.72 RR42_RS18575 ABC transporter ATP-binding protein low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 RS_RS14590 energy-dependent translational throttle protein EttA low > 80
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.73 HSERO_RS23550 ABC transporter ATP-binding protein low > 78
Ralstonia solanacearum PSI07 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 RPSI07_RS10585 energy-dependent translational throttle protein EttA low > 81
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 RALBFv3_RS06640 energy-dependent translational throttle protein EttA low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 UW163_RS06985 energy-dependent translational throttle protein EttA
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 ABZR87_RS02310 energy-dependent translational throttle protein EttA low > 80
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.69 Xcc-8004.4400.1 ABC transporter, ATP-binding protein
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.73 LRK54_RS04630 energy-dependent translational throttle protein EttA low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.73 LRK55_RS04405 energy-dependent translational throttle protein EttA
Acinetobacter radioresistens SK82 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.68 MPMX26_02832 Energy-dependent translational throttle protein EttA low > 36
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.71 ABCV34_RS08155 energy-dependent translational throttle protein EttA low > 48
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.74 OKGIIK_11445 ettA energy-dependent translational throttle protein EttA low > 52
Lysobacter sp. OAE881 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.71 ABIE51_RS04610 energy-dependent translational throttle protein EttA
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.74 ABZR86_RS10725 energy-dependent translational throttle protein EttA
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.70 GFF6780 Energy-dependent translational throttle protein EttA low > 127
Dechlorosoma suillum PS 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.73 Dsui_2746 ATP-binding cassette protein, ChvD family low > 51
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 BPHYT_RS17480 ABC transporter ATP-binding protein low > 109
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.70 Ac3H11_387 ABC transporter ATP-binding protein
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.75 QEN71_RS27625 energy-dependent translational throttle protein EttA 0.72 97
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 H281DRAFT_05699 sulfate-transporting ATPase low > 103
Paraburkholderia graminis OAS925 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 ABIE53_003656 sulfate-transporting ATPase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.73 GFF3531 ABC transporter low > 90
Azospirillum sp. SherDot2 0.42 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.58 MPMX19_00626 Energy-dependent translational throttle protein EttA low > 112
Azospirillum brasilense Sp245 0.42 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase 0.58 AZOBR_RS09515 heme ABC transporter ATP-binding protein low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 A4249_RS07905 energy-dependent translational throttle protein EttA
Desulfovibrio vulgaris Hildenborough JW710 0.41 DVU3351 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) 0.59 DVU2586 ABC transporter, ATP-binding protein (TIGR) low > 55
Rhodospirillum rubrum S1H 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) 0.62 Rru_A1527 ABC transporter component (NCBI) low > 58
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.52 ABIE40_RS11960 energy-dependent translational throttle protein EttA low > 107
Bosea sp. OAE506 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.53 ABIE41_RS12400 energy-dependent translational throttle protein EttA low > 77
Agrobacterium fabrum C58 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase 0.53 Atu2125 ABC transporter, nucleotide binding/ATPase protein low > 89
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 ABZR88_RS04815 energy-dependent translational throttle protein EttA
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.58 CA264_18150 energy-dependent translational throttle protein EttA
Dinoroseobacter shibae DFL-12 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) 0.58 Dshi_2197 ABC transporter related (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.39 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase 0.54 SMc04454 ABC transporter ATP-binding protein low > 103
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.59 Echvi_0034 ATP-binding cassette protein, ChvD family
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 CCNA_02231 ABC transporter ATP-binding protein
Caulobacter crescentus NA1000 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 CCNA_02231 ABC transporter ATP-binding protein
Phaeobacter inhibens DSM 17395 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.57 PGA1_c26300 ABC transporter, ATP-binding protein 0.37 10
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.58 CA265_RS14910 ABC transporter ATP-binding protein
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.57 Ga0059261_0048 ATP-binding cassette protein, ChvD family
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.30 Synpcc7942_1381 ATPase low > 38
Phocaeicola dorei CL03T12C01 0.37 ABI39_RS05610 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 ABI39_RS14035 energy-dependent translational throttle protein EttA
Phocaeicola vulgatus CL09T03C04 0.37 HMPREF1058_RS11320 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 HMPREF1058_RS17820 energy-dependent translational throttle protein EttA
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2053 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq) 0.58 DvMF_1058 putative ABC transporter ATP-binding protein (RefSeq) low > 51
Magnetospirillum magneticum AMB-1 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.60 AMB_RS04455 energy-dependent translational throttle protein EttA low > 64
Bacteroides thetaiotaomicron VPI-5482 0.36 BT3214 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.57 BT1186 ABC transporter ATP-binding protein (NCBI ptt file)
Bacteroides ovatus ATCC 8483 0.36 BACOVA_02915 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.57 BACOVA_03986 ATP-binding cassette protein, ChvD family
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS17105 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 HMPREF1078_RS07420 energy-dependent translational throttle protein EttA
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS01705 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.58 HMPREF1181_RS12740 energy-dependent translational throttle protein EttA
Rhodopseudomonas palustris CGA009 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 TX73_018705 energy-dependent translational throttle protein EttA 0.45 49

Not shown: 3 genomes with orthologs for PP_0832 only; 2 genomes with orthologs for PP_0674 only