Conservation of cofitness between PP_1216 and PP_0123 in Pseudomonas putida KT2440

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 1.0 PP_0123 DNA polymerase I, 5 0.36 12
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.79 Psyr_0270 DNA polymerase I — —
Pseudomonas sp. S08-1 0.82 OH686_19130 Holliday junction DNA helicase RuvA 0.77 OH686_12215 DNA polymerase I — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_03585 ATP-dependent DNA helicase RuvA 0.80 AO353_10930 DNA polymerase I 0.24 33
Pseudomonas sp. RS175 0.82 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.30 6
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.77 PFLU_RS00395 DNA polymerase I 0.31 29
Pseudomonas fluorescens SBW25 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas simiae WCS417 0.81 PS417_22450 ATP-dependent DNA helicase RuvA 0.79 PS417_00405 DNA polymerase I 0.30 26
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_18020 ATP-dependent DNA helicase RuvA 0.80 AO356_11465 DNA polymerase I 0.30 32
Pseudomonas stutzeri RCH2 0.80 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.77 Psest_4219 DNA polymerase I 0.23 29
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_09245 Holliday junction branch migration protein RuvA 0.61 CSW01_00560 DNA polymerase I low > 62
Shewanella sp. ANA-3 0.56 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.55 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.62 MIT1002_00014 DNA polymerase I — —
Rahnella sp. WP5 0.54 EX31_RS11675 Holliday junction branch migration protein RuvA 0.61 EX31_RS15905 DNA polymerase I low > 89
Shewanella loihica PV-4 0.53 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia fergusonii Becca 0.53 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli BW25113 0.53 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) 0.31 43
Escherichia coli BL21 0.53 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.61 ECD_03749 5 — —
Enterobacter sp. TBS_079 0.52 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.60 MPMX20_04601 DNA polymerase I low > 85
Shewanella amazonensis SB2B 0.52 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) — —
Escherichia coli ECRC98 0.52 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC99 0.52 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC102 0.52 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECOR27 0.52 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC101 0.52 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECOR38 0.52 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.61 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC101 0.52 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC62 0.52 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.61 BNILDI_05250 polA DNA polymerase I — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.59 BWI76_RS00355 DNA polymerase I — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1640 Holliday junction DNA helicase RuvA 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) — —
Pantoea sp. MT58 0.51 IAI47_08445 Holliday junction branch migration protein RuvA 0.60 IAI47_00430 DNA polymerase I low > 76
Marinobacter adhaerens HP15 0.51 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.56 HP15_293 DNA polymerase I — —
Erwinia tracheiphila SCR3 0.51 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.61 LU632_RS23870 polA DNA polymerase I — —
Dickeya dadantii 3937 0.50 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.59 DDA3937_RS00105 DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS11845 Holliday junction branch migration protein RuvA 0.61 HER17_RS21470 DNA polymerase I — —
Dickeya dianthicola ME23 0.48 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.59 DZA65_RS22235 DNA polymerase I — —
Serratia liquefaciens MT49 0.48 IAI46_14625 Holliday junction branch migration protein RuvA 0.60 IAI46_24985 DNA polymerase I — —
Dickeya dianthicola 67-19 0.48 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.59 HGI48_RS21260 DNA polymerase I — —
Acinetobacter radioresistens SK82 0.45 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.48 MPMX26_00574 DNA polymerase I low > 36
Lysobacter sp. OAE881 0.45 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Dechlorosoma suillum PS 0.45 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.52 Dsui_0459 DNA polymerase I — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.51 BPHYT_RS33610 DNA polymerase I — —
Variovorax sp. SCN45 0.44 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.56 LRK54_RS06840 DNA polymerase I — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.56 LRK55_RS06585 DNA polymerase I — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Variovorax sp. OAS795 0.44 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.48 ABID97_RS09180 DNA polymerase I 0.53 4
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.52 QEN71_RS17885 DNA polymerase I — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Paraburkholderia graminis OAS925 0.43 ABIE53_003494 Holliday junction DNA helicase RuvA 0.51 ABIE53_004852 DNA polymerase-1 0.28 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1666 Holliday junction DNA helicase RuvA 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) 0.61 9
Ralstonia solanacearum GMI1000 0.42 RS_RS02490 Holliday junction branch migration protein RuvA 0.51 RS_RS11195 DNA polymerase I — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.56 OKGIIK_16785 polA DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.51 RALBFv3_RS03750 DNA polymerase I — —
Ralstonia solanacearum UW163 0.42 UW163_RS01915 Holliday junction branch migration protein RuvA 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.51 RPSI07_RS13480 DNA polymerase I — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02705 Holliday junction DNA helicase RuvA 0.52 RR42_RS15050 DNA polymerase I 0.50 4
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.50 H281DRAFT_06022 DNA polymerase I — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.53 HSERO_RS02260 DNA polymerase I 0.55 2
Acidovorax sp. GW101-3H11 0.40 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_14545 Holliday junction branch migration protein RuvA 0.35 CA264_16535 DNA polymerase I — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_2298 ruvA Holliday junction DNA helicase motor protein 0.31 Synpcc7942_0194 polA DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.36 Echvi_1032 DNA polymerase I low > 79
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.36 HMPREF1078_RS06335 DNA polymerase I low > 61
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) — —
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00691 Holliday junction DNA helicase RuvA 0.37 BACOVA_01357 DNA-directed DNA polymerase — —
Azospirillum brasilense Sp245 0.30 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.39 AZOBR_RS30685 DNA polymerase — —
Azospirillum sp. SherDot2 0.30 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.38 MPMX19_04869 DNA polymerase I — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Magnetospirillum magneticum AMB-1 0.30 AMB_RS16255 Holliday junction branch migration protein RuvA 0.39 AMB_RS21305 DNA polymerase I — —
Rhodopseudomonas palustris CGA009 0.30 TX73_005655 Holliday junction branch migration protein RuvA 0.36 TX73_024545 DNA polymerase I — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.37 ABZR88_RS20185 DNA polymerase I — —
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) — —
Bosea sp. OAE506 0.29 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.31 ABIE41_RS03570 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.28 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS18995 Holliday junction branch migration protein RuvA 0.36 CA265_RS19630 DNA polymerase I 0.41 17
Agrobacterium fabrum C58 0.28 Atu3723 Holliday junction DNA helicase RuvA 0.41 Atu0110 DNA polymerase I — —
Rhizobium sp. OAE497 0.27 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.31 ABIE40_RS00490 DNA polymerase I low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15860 Holliday junction branch migration protein RuvA 0.39 A4249_RS13840 DNA polymerase I — —
Dinoroseobacter shibae DFL-12 0.27 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.35 HMPREF1058_RS11500 DNA polymerase I low > 67
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.25 DvMF_1713 DNA polymerase I (RefSeq) — —
Mycobacterium tuberculosis H37Rv 0.25 Rv2593c Probable holliday junction DNA helicase RuvA 0.26 Rv1629 Probable DNA polymerase I PolA — —
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.39 PGA1_c31780 DNA polymerase I 0.35 18
Fusobacterium nucleatum SB010 0.24 HUW76_06655 Holliday junction branch migration protein RuvA 0.26 HUW76_04385 DNA polymerase I low > 35
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.40 CCNA_03577 DNA polymerase I — —
Caulobacter crescentus NA1000 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.40 CCNA_03577 DNA polymerase I low > 66

Not shown: 4 genomes with orthologs for PP_1216 only; 0 genomes with orthologs for PP_0123 only