| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_02945 | | DNA repair protein RadA | 1.0 | IAI46_19215 | | exodeoxyribonuclease VII large subunit | 0.46 | 4 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF1057 | | DNA repair protein RadA | 0.72 | GFF2159 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | — | — |
| Escherichia fergusonii Becca | 0.93 | EFB2_04057 | | DNA repair protein RadA | 0.72 | EFB2_01384 | | Exodeoxyribonuclease 7 large subunit | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.93 | OHPLBJKB_03672 | | DNA repair protein RadA | 0.74 | OHPLBJKB_01200 | | Exodeoxyribonuclease 7 large subunit | low | > 73 |
| Escherichia coli Nissle 1917 | 0.93 | ECOLIN_RS25190 | | DNA repair protein RadA | 0.72 | ECOLIN_RS14245 | | exodeoxyribonuclease VII large subunit | low | > 55 |
| Escherichia coli BL21 | 0.93 | ECD_04265 | | DNA repair protein | 0.73 | ECD_02401 | | exonuclease VII, large subunit | 0.68 | 16 |
| Escherichia coli BW25113 | 0.93 | b4389 | radA | predicted repair protein (NCBI) | 0.73 | b2509 | xseA | exodeoxyribonuclease VII large subunit (NCBI) | 0.47 | 10 |
| Rahnella sp. WP5 | 0.93 | EX31_RS04030 | | DNA repair protein RadA | 0.81 | EX31_RS20455 | | exodeoxyribonuclease VII large subunit | low | > 89 |
| Escherichia coli ECRC62 | 0.93 | BNILDI_08075 | radA | DNA repair protein RadA | 0.74 | BNILDI_12205 | xseA | exodeoxyribonuclease VII large subunit | low | > 75 |
| Escherichia coli ECRC100 | 0.93 | OKFHMN_11195 | radA | DNA repair protein RadA | 0.72 | OKFHMN_21755 | xseA | exodeoxyribonuclease VII large subunit | low | > 80 |
| Escherichia coli ECRC101 | 0.93 | MCAODC_01710 | radA | DNA repair protein RadA | 0.72 | MCAODC_12285 | xseA | exodeoxyribonuclease VII large subunit | low | > 87 |
| Escherichia coli ECOR27 | 0.93 | NOLOHH_03520 | radA | DNA repair protein RadA | 0.73 | NOLOHH_13405 | xseA | exodeoxyribonuclease VII large subunit | low | > 75 |
| Escherichia coli ECRC98 | 0.93 | JDDGAC_14790 | radA | DNA repair protein RadA | 0.72 | JDDGAC_25430 | xseA | exodeoxyribonuclease VII large subunit | low | > 86 |
| Enterobacter sp. TBS_079 | 0.93 | MPMX20_00694 | | DNA repair protein RadA | 0.73 | MPMX20_03383 | | Exodeoxyribonuclease 7 large subunit | low | > 85 |
| Escherichia coli ECRC99 | 0.93 | KEDOAH_16960 | radA | DNA repair protein RadA | 0.72 | KEDOAH_06465 | xseA | exodeoxyribonuclease VII large subunit | — | — |
| Escherichia coli ECRC102 | 0.93 | NIAGMN_09045 | radA | DNA repair protein RadA | 0.72 | NIAGMN_19525 | xseA | exodeoxyribonuclease VII large subunit | — | — |
| Escherichia coli ECOR38 | 0.93 | HEPCGN_09195 | radA | DNA repair protein RadA | 0.73 | HEPCGN_20895 | xseA | exodeoxyribonuclease VII large subunit | low | > 87 |
| Enterobacter asburiae PDN3 | 0.92 | EX28DRAFT_3597 | | DNA repair protein RadA | 0.73 | EX28DRAFT_0138 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 76 |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS04165 | | DNA repair protein RadA | 0.73 | BWI76_RS21035 | | exodeoxyribonuclease VII large subunit | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.92 | LU632_RS02550 | radA | DNA repair protein RadA | 0.73 | LU632_RS17760 | xseA | exodeoxyribonuclease VII large subunit | low | > 74 |
| Pantoea sp. MT58 | 0.91 | IAI47_16345 | | DNA repair protein RadA | 0.70 | IAI47_05100 | | exodeoxyribonuclease VII large subunit | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.89 | HER17_RS19085 | | DNA repair protein RadA | 0.79 | HER17_RS06150 | | exodeoxyribonuclease VII large subunit | low | > 75 |
| Dickeya dianthicola ME23 | 0.87 | DZA65_RS02485 | | DNA repair protein RadA | 0.78 | DZA65_RS16615 | | exodeoxyribonuclease VII large subunit | low | > 75 |
| Dickeya dianthicola 67-19 | 0.87 | HGI48_RS02380 | | DNA repair protein RadA | 0.78 | HGI48_RS15540 | | exodeoxyribonuclease VII large subunit | low | > 71 |
| Dickeya dadantii 3937 | 0.87 | DDA3937_RS02420 | | DNA repair protein RadA | 0.78 | DDA3937_RS15425 | | exodeoxyribonuclease VII large subunit | low | > 74 |
| Shewanella oneidensis MR-1 | 0.77 | SO1226 | radA | DNA repair protein RadA (NCBI ptt file) | 0.46 | SO3294 | xseA | exodeoxyribonuclease VII, large subunit (NCBI ptt file) | 0.44 | 20 |
| Shewanella sp. ANA-3 | 0.77 | Shewana3_1049 | | DNA repair protein RadA (RefSeq) | 0.48 | Shewana3_1234 | xseA | exodeoxyribonuclease VII large subunit (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.76 | CSW01_11870 | | DNA repair protein RadA | 0.54 | CSW01_03975 | | exodeoxyribonuclease VII large subunit | 0.74 | 15 |
| Shewanella amazonensis SB2B | 0.75 | Sama_0981 | | DNA repair protein RadA (RefSeq) | 0.46 | Sama_2360 | xseA | exodeoxyribonuclease VII large subunit (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.72 | MIT1002_02706 | | Lon protease 2 | 0.47 | MIT1002_02780 | | Exodeoxyribonuclease 7 large subunit | low | > 70 |
| Marinobacter adhaerens HP15 | 0.68 | HP15_487 | | DNA repair protein RadA | 0.43 | HP15_2052 | | exodeoxyribonuclease VII large subunit | low | > 73 |
| Pseudomonas fluorescens GW456-L13 | 0.63 | PfGW456L13_1442 | | DNA repair protein RadA | 0.38 | PfGW456L13_4851 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 87 |
| Pseudomonas sp. RS175 | 0.63 | PFR28_03792 | | DNA repair protein RadA | 0.38 | PFR28_00307 | | Exodeoxyribonuclease 7 large subunit | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.63 | Psyr_4275 | | DNA replication and repair protein RadA | 0.37 | Psyr_1259 | | Exodeoxyribonuclease VII large subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.63 | Psyr_4275 | | DNA replication and repair protein RadA | 0.37 | Psyr_1259 | | Exodeoxyribonuclease VII large subunit | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2768 | | DNA repair protein RadA | 0.38 | Pf1N1B4_844 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | 0.25 | 79 |
| Pseudomonas fluorescens SBW25 | 0.62 | PFLU_RS26230 | | DNA repair protein RadA | 0.39 | PFLU_RS24755 | | exodeoxyribonuclease VII large subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.62 | PFLU_RS26230 | | DNA repair protein RadA | 0.39 | PFLU_RS24755 | | exodeoxyribonuclease VII large subunit | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.62 | Pf6N2E2_5076 | | DNA repair protein RadA | 0.38 | Pf6N2E2_3168 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | 0.40 | 8 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_15680 | | DNA repair protein RadA | 0.38 | AO356_06540 | | exodeoxyribonuclease | 0.41 | 25 |
| Pseudomonas simiae WCS417 | 0.62 | PS417_24305 | | DNA repair protein RadA | 0.39 | PS417_23095 | | exodeoxyribonuclease | low | > 88 |
| Pseudomonas sp. S08-1 | 0.62 | OH686_16185 | | DNA repair protein RadA | 0.36 | OH686_17580 | | exodeoxyribonuclease VII, large subunit | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_13980 | | DNA repair protein RadA | 0.38 | AO353_15935 | | exodeoxyribonuclease | 0.36 | 38 |
| Kangiella aquimarina DSM 16071 | 0.61 | B158DRAFT_0877 | | DNA replication and repair protein RadA | 0.42 | B158DRAFT_1157 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | 0.82 | 4 |
| Pseudomonas stutzeri RCH2 | 0.61 | Psest_3401 | | DNA repair protein RadA | 0.39 | Psest_1284 | | exodeoxyribonuclease VII, large subunit | 0.28 | 23 |
| Pseudomonas putida KT2440 | 0.61 | PP_4644 | | DNA repair enzyme | 0.36 | PP_1027 | | Exodeoxyribonuclease 7 large subunit | low | > 96 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.58 | Xcc-8004.3812.1 | | DNA repair protein RadA | 0.38 | Xcc-8004.2251.1 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS08845 | | DNA repair protein RadA | 0.43 | ABZR86_RS06815 | | exodeoxyribonuclease VII large subunit | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.57 | OKGIIK_09580 | radA | DNA repair protein RadA | 0.40 | OKGIIK_07700 | xseA | exodeoxyribonuclease VII large subunit | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.57 | LRK55_RS02280 | | DNA repair protein RadA | 0.41 | LRK55_RS17410 | | exodeoxyribonuclease VII large subunit | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.57 | LRK54_RS02525 | | DNA repair protein RadA | 0.40 | LRK54_RS17185 | | exodeoxyribonuclease VII large subunit | low | > 59 |
| Lysobacter sp. OAE881 | 0.56 | ABIE51_RS07685 | | DNA repair protein RadA | 0.36 | ABIE51_RS13750 | | exodeoxyribonuclease VII large subunit | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.54 | QEN71_RS06320 | | DNA repair protein RadA | 0.35 | QEN71_RS02835 | | exodeoxyribonuclease VII large subunit | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS12030 | | DNA repair protein RadA | 0.34 | RR42_RS03475 | | exodeoxyribonuclease VII large subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_00590 | | DNA replication and repair protein RadA | 0.34 | H281DRAFT_04109 | | Exodeoxyribonuclease VII large subunit | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.53 | ABIE53_002526 | | DNA repair protein RadA/Sms | 0.34 | ABIE53_003344 | | exodeoxyribonuclease VII large subunit | low | > 113 |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS11670 | | DNA repair protein RadA | 0.32 | ABZR87_RS00710 | | exodeoxyribonuclease VII large subunit | 0.39 | 47 |
| Burkholderia phytofirmans PsJN | 0.53 | BPHYT_RS12235 | | DNA repair protein RadA | 0.34 | BPHYT_RS15865 | | exodeoxyribonuclease VII large subunit | low | > 109 |
| Ralstonia solanacearum UW163 | 0.52 | UW163_RS13540 | | DNA repair protein RadA | 0.31 | UW163_RS08565 | | exodeoxyribonuclease VII large subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.52 | RALBFv3_RS00210 | | DNA repair protein RadA | 0.31 | RALBFv3_RS05060 | | exodeoxyribonuclease VII large subunit | 0.41 | 4 |
| Ralstonia solanacearum PSI07 | 0.52 | RPSI07_RS17270 | | DNA repair protein RadA | 0.32 | RPSI07_RS12235 | | exodeoxyribonuclease VII large subunit | 0.51 | 2 |
| Dechlorosoma suillum PS | 0.52 | Dsui_2413 | | DNA repair protein RadA | 0.35 | Dsui_3268 | | exodeoxyribonuclease VII, large subunit | low | > 51 |
| Variovorax sp. OAS795 | 0.52 | ABID97_RS03770 | | DNA repair protein RadA | 0.32 | ABID97_RS16945 | | exodeoxyribonuclease VII large subunit | 0.29 | 24 |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS06880 | | DNA repair protein RadA | 0.31 | RS_RS12670 | | exodeoxyribonuclease VII large subunit | low | > 80 |
| Variovorax sp. SCN45 | 0.52 | GFF5087 | | DNA repair protein RadA | 0.31 | GFF349 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS10745 | | DNA repair protein RadA | 0.35 | HSERO_RS05850 | | exodeoxyribonuclease VII large subunit | 0.43 | 16 |
| Castellaniella sp019104865 MT123 | 0.51 | ABCV34_RS02345 | | DNA repair protein RadA | 0.34 | ABCV34_RS05330 | | exodeoxyribonuclease VII large subunit | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3371 | | DNA repair protein RadA | 0.30 | Ac3H11_2382 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | 0.43 | 66 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.48 | GFF1833 | | DNA repair protein RadA | 0.33 | GFF4511 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | 0.53 | 60 |
| Azospirillum sp. SherDot2 | 0.41 | MPMX19_00904 | | DNA repair protein RadA | 0.25 | MPMX19_01631 | | Exodeoxyribonuclease 7 large subunit | 0.56 | 10 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS17800 | | DNA repair protein RadA | 0.24 | ABIE41_RS23155 | | exodeoxyribonuclease VII large subunit | 0.56 | 15 |
| Phaeobacter inhibens DSM 17395 | 0.41 | PGA1_c10840 | | DNA repair protein RadA | 0.26 | PGA1_c23600 | | exodeoxyribonuclease 7 large subunit | 0.26 | 27 |
| Parabacteroides merdae CL09T00C40 | 0.40 | HMPREF1078_RS08395 | | DNA repair protein RadA | 0.14 | HMPREF1078_RS12780 | | exodeoxyribonuclease VII large subunit | low | > 61 |
| Dinoroseobacter shibae DFL-12 | 0.40 | Dshi_2129 | | DNA repair protein RadA (RefSeq) | 0.22 | Dshi_2727 | | exodeoxyribonuclease VII, large subunit (RefSeq) | — | — |
| Synechococcus elongatus PCC 7942 | 0.40 | Synpcc7942_1452 | radA | DNA repair protein RadA | 0.19 | Synpcc7942_0368 | xseA | exodeoxyribonuclease VII large subunit | low | > 38 |
| Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS10420 | | DNA repair protein RadA | 0.14 | ABI39_RS01425 | | exodeoxyribonuclease VII large subunit | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS14715 | | DNA repair protein RadA | 0.14 | HMPREF1058_RS02230 | | exodeoxyribonuclease VII large subunit | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.40 | BT2406 | | putative DNA repair protein (NCBI ptt file) | 0.13 | BT3890 | | putative exodeoxyribonuclease VII large subunit (NCBI ptt file) | low | > 81 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.39 | CA264_17125 | | DNA repair protein RadA | 0.14 | CA264_02365 | | exodeoxyribonuclease VII large subunit | 0.44 | 30 |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_01732 | | DNA repair protein RadA | 0.24 | CCNA_02329 | | exodeoxyribonuclease VII large subunit | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_01732 | | DNA repair protein RadA | 0.24 | CCNA_02329 | | exodeoxyribonuclease VII large subunit | low | > 67 |
| Sinorhizobium meliloti 1021 | 0.39 | SMc00556 | | DNA repair protein RadA | 0.26 | SMc00378 | | exodeoxyribonuclease VII large subunit | 0.38 | 28 |
| Bacteroides ovatus ATCC 8483 | 0.39 | BACOVA_03019 | | DNA repair protein RadA | 0.13 | BACOVA_01111 | | Exonuclease VII, large subunit | low | > 94 |
| Rhodospirillum rubrum S1H | 0.39 | Rru_A0406 | | DNA repair protein RadA (NCBI) | 0.22 | Rru_A0159 | | Exodeoxyribonuclease VII (NCBI) | low | > 58 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_0751 | | DNA repair protein RadA | 0.24 | Ga0059261_1440 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | — | — |
| Shewanella loihica PV-4 | 0.36 | Shew_2807 | | DNA repair protein RadA (RefSeq) | 0.49 | Shew_1296 | xseA | exodeoxyribonuclease VII large subunit (RefSeq) | 0.49 | 30 |
| Bifidobacterium breve UCC2003 | 0.35 | BBR_RS18740 | | DNA repair protein RadA | 0.18 | BBR_RS17920 | | exodeoxyribonuclease VII large subunit | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU1590 | radA | DNA repair protein RadA (TIGR) | 0.31 | DVU1346 | xseA | exodeoxyribonuclease VII, large subunit (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.33 | DvMF_0471 | | DNA repair protein RadA (RefSeq) | 0.28 | DvMF_0122 | | exodeoxyribonuclease VII, large subunit (RefSeq) | 0.42 | 2 |
| Fusobacterium nucleatum SB010 | 0.32 | HUW76_02270 | | DNA repair protein RadA | 0.26 | HUW76_06820 | | exodeoxyribonuclease VII large subunit | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.32 | Rv3585 | | DNA repair protein RadA (DNA repair protein SMS) | 0.18 | Rv1108c | | Probable exodeoxyribonuclease VII (large subunit) XseA (exonuclease VII large subunit) | 0.51 | 9 |
Not shown: 11 genomes with orthologs for IAI46_02945 only; 2 genomes with orthologs for IAI46_19215 only