Conservation of cofitness between PS417_25395 and PS417_00405 in Pseudomonas simiae WCS417

109 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25395 excinuclease ABC subunit A 1.0 PS417_00405 DNA polymerase I 0.43 11
Pseudomonas fluorescens SBW25 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.96 PFLU_RS00395 DNA polymerase I 0.65 73
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.96 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05194 UvrABC system protein A 0.95 GEMAOFIL_00284 DNA polymerase I low > 93
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.82 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.89 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) 0.40 14
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06855 ABC-ATPase UvrA 0.85 AO353_10930 DNA polymerase I 0.36 38
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.81 AO356_11465 DNA polymerase I 0.47 19
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.82 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.51 12
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.81 PFR28_04624 DNA polymerase I low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.90 GFF631 DNA polymerase I low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.77 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.77 Psyr_0270 DNA polymerase I low > 86
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.80 COO64_RS02475 polA DNA polymerase I 0.47 7
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.76 PP_0123 DNA polymerase I, 5 — —
Pseudomonas sp. BP01 0.93 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.76 JOY50_RS21110 polA DNA polymerase I low > 84
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.73 OH686_12215 DNA polymerase I low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.75 IKLFDK_25945 DNA polymerase I low > 100
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.72 Psest_4219 DNA polymerase I 0.37 14
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.57 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.57 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.57 MCAODC_04650 polA DNA polymerase I low > 88
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.57 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.57 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.57 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.57 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.57 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.57 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.57 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.57 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.57 BNILDI_05250 polA DNA polymerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.56 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.64 11
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.57 ECD_03749 5 — —
Klebsiella pneumoniae MKP103 0.77 KDGMDA_10400 excinuclease ABC subunit UvrA 0.55 KDGMDA_08970 DNA polymerase I — —
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.58 DDA3937_RS00105 DNA polymerase I — —
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.58 EX31_RS15905 DNA polymerase I low > 89
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.58 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.58 HGI48_RS21260 DNA polymerase I — —
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.53 HP15_293 DNA polymerase I 0.39 42
Enterobacter sp. TBS_079 0.76 MPMX20_00276 UvrABC system protein A 0.56 MPMX20_04601 DNA polymerase I low > 85
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.57 BWI76_RS00355 DNA polymerase I low > 92
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.55 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.58 HER17_RS21470 DNA polymerase I — —
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.57 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.57 PagCFBP13505_RS18920 DNA polymerase I low > 74
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.57 MIT1002_00014 DNA polymerase I low > 70
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.59 IAI46_24985 DNA polymerase I 0.37 83
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.57 CSW01_00560 DNA polymerase I low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.57 IAI47_00430 DNA polymerase I low > 76
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.57 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.57 OLJFJH_05470 DNA polymerase I low > 58
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.58 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.57 Shewana3_4109 DNA polymerase I (RefSeq) — —
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.58 LU632_RS23870 polA DNA polymerase I — —
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.58 IJEDHG_10990 polA DNA polymerase I — —
Shewanella loihica PV-4 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.58 Shew_3714 DNA polymerase I (RefSeq) low > 60
Dechlorosoma suillum PS 0.74 Dsui_1622 excinuclease ABC, A subunit 0.49 Dsui_0459 DNA polymerase I 0.48 34
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.52 ABZR86_RS17015 DNA polymerase I low > 74
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.50 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Methylophilus sp. DMC18 0.71 GFF2008 UvrABC system protein A 0.50 GFF1658 DNA polymerase I low > 43
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.52 LRK53_RS01570 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.53 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.53 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.52 OKGIIK_16785 polA DNA polymerase I low > 52
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.50 ABZR87_RS15680 DNA polymerase I 0.52 67
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.51 HSERO_RS02260 DNA polymerase I 0.43 32
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.49 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.48 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.49 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.49 RALBFv3_RS03750 DNA polymerase I low > 76
Acinetobacter baumannii LAC-4 0.69 RR41_RS01040 excinuclease ABC subunit UvrA 0.45 RR41_RS15915 DNA polymerase I — —
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.50 RR42_RS15050 DNA polymerase I low > 128
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.48 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.50 QEN71_RS17885 DNA polymerase I — —
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.47 MPMX26_00574 DNA polymerase I 0.38 18
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.48 H281DRAFT_06022 DNA polymerase I 0.28 80
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.49 ABIE53_004852 DNA polymerase-1 low > 113
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.47 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.44 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.45 ABID97_RS09180 DNA polymerase I low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.47 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Xanthobacter sp. DMC5 0.62 GFF749 UvrABC system protein A 0.35 GFF1973 DNA polymerase I — —
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.46 ABCV34_RS02195 DNA polymerase I low > 48
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.33 Rru_A3514 DNA polymerase A (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS08575 excinuclease ABC subunit UvrA 0.37 A4249_RS13840 DNA polymerase I — —
Sphingobium sp. HT1-2 0.61 GFF1696 Excinuclease ABC subunit A 0.32 GFF3778 DNA polymerase I (EC 2.7.7.7) low > 95
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.36 MPMX19_04869 DNA polymerase I low > 112
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.39 Dshi_2909 DNA polymerase I (RefSeq) 0.42 23
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.37 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.37 CCNA_03577 DNA polymerase I 0.47 41
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.34 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.33 19
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.38 AMB_RS21305 DNA polymerase I — —
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.37 AZOBR_RS30685 DNA polymerase 0.70 6
Agrobacterium fabrum C58 0.60 Atu1513 ABC excinuclease subunit A 0.38 Atu0110 DNA polymerase I — —
Rhizobium sp. OAE497 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.36 ABIE40_RS00490 DNA polymerase I low > 107
Bosea sp. OAE506 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.34 ABIE41_RS03570 DNA polymerase I low > 77
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.37 PGA1_c31780 DNA polymerase I 0.27 31
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.25 Rv1629 Probable DNA polymerase I PolA — —
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.25 HUW76_04385 DNA polymerase I low > 35
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.31 Synpcc7942_0194 polA DNA polymerase I — —
Synechocystis sp000284455 PCC 6803 0.53 SGL_RS06380 excinuclease ABC subunit UvrA 0.29 SGL_RS16290 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.35 Echvi_1032 DNA polymerase I low > 79
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.35 BACOVA_01357 DNA-directed DNA polymerase low > 96
Bacteroides thetaiotaomicron VPI-5482 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.35 BT3260 DNA polymerase I (NCBI ptt file) 0.51 39
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.35 CA264_16535 DNA polymerase I — —
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.35 HMPREF1078_RS06335 DNA polymerase I low > 61
Cellulophaga baltica 18 0.49 M666_RS15455 excinuclease ABC subunit UvrA 0.34 M666_RS07555 DNA polymerase I low > 67
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.34 HMPREF1181_RS02070 DNA polymerase I low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS25080 excinuclease ABC subunit A 0.33 CA265_RS19630 DNA polymerase I 0.40 26
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.34 ABZR88_RS20185 DNA polymerase I low > 71

Not shown: 9 genomes with orthologs for PS417_25395 only; 1 genomes with orthologs for PS417_00405 only