Conservation of cofitness between PS417_25395 and PS417_22855 in Pseudomonas simiae WCS417

107 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25395 excinuclease ABC subunit A 1.0 PS417_22855 ssDNA exonuclease RecJ 0.31 20
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.98 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.98 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05194 UvrABC system protein A 0.98 GEMAOFIL_04722 Single-stranded-DNA-specific exonuclease RecJ low > 93
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.95 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.94 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06855 ABC-ATPase UvrA 0.93 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.50 18
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.95 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.23 93
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.95 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.60 10
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.94 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.95 GFF1996 Single-stranded-DNA-specific exonuclease RecJ low > 89
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.88 Psyr_1298 exonuclease RecJ 0.35 14
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.88 Psyr_1298 exonuclease RecJ low > 86
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.91 COO64_RS04980 recJ single-stranded-DNA-specific exonuclease RecJ low > 93
Pseudomonas sp. BP01 0.93 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.90 JOY50_RS11745 recJ single-stranded-DNA-specific exonuclease RecJ low > 84
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.90 PP_1477 ssDNA-specific exonuclease RecJ
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.83 OH686_06955 single-stranded-DNA-specific exonuclease RecJ low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.81 IKLFDK_19015 single-stranded-DNA-specific exonuclease RecJ low > 100
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.80 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.44 12
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.58 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ low > 87
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.58 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.58 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ low > 88
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.58 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ low > 80
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.58 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ low > 86
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.58 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ low > 79
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.58 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 88
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.58 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ low > 55
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.58 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ low > 75
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.58 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.39 14
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.58 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.57 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.58 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.64 10
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.58 ECD_02724 ssDNA exonuclease, 5 0.65 17
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.56 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ low > 74
Klebsiella pneumoniae MKP103 0.77 KDGMDA_10400 excinuclease ABC subunit UvrA 0.57 KDGMDA_04290 single-stranded-DNA-specific exonuclease RecJ low > 95
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.56 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ low > 89
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.56 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.56 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ low > 75
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.53 HP15_766 bacterial RecJ exonuclease 0.68 14
Enterobacter sp. TBS_079 0.76 MPMX20_00276 UvrABC system protein A 0.56 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.43 19
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.55 BWI76_RS23805 ssDNA exonuclease RecJ low > 92
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.54 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.57 22
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.56 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ low > 75
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.56 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ low > 76
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.52 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.57 PagCFBP13505_RS15870 single-stranded-DNA-specific exonuclease RecJ low > 74
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.59 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.39 59
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.59 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.57 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ low > 76
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.61 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.59 5
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.56 OLJFJH_08845 single-stranded-DNA-specific exonuclease RecJ low > 58
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.60 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 73
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.67 5
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.55 IJEDHG_03185 recJ single-stranded-DNA-specific exonuclease RecJ low > 61
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.55 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ 0.38 61
Shewanella loihica PV-4 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.59 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.82 9
Dechlorosoma suillum PS 0.74 Dsui_1622 excinuclease ABC, A subunit 0.48 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.46 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ low > 74
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.44 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 74
Methylophilus sp. DMC18 0.71 GFF2008 UvrABC system protein A 0.49 GFF889 Single-stranded-DNA-specific exonuclease RecJ low > 43
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.43 LRK53_RS09835 DHHA1 domain-containing protein low > 59
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.45 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.20 LRK55_RS18310 DHHA1 domain-containing protein low > 63
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.44 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ low > 52
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.45 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.51 76
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.47 HSERO_RS13965 single-stranded DNA exonuclease 0.38 49
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.46 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ low > 80
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.46 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ low > 81
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.46 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.46 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ
Acinetobacter baumannii LAC-4 0.69 RR41_RS01040 excinuclease ABC subunit UvrA 0.42 RR41_RS00920 single-stranded-DNA-specific exonuclease RecJ low > 55
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.48 RR42_RS06090 single-stranded DNA exonuclease 0.80 4
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.46 BPHYT_RS12730 single-stranded DNA exonuclease low > 109
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.47 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ low > 153
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.44 MPMX26_02917 Single-stranded-DNA-specific exonuclease RecJ low > 36
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.47 H281DRAFT_00488 exonuclease RecJ low > 103
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.47 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.34 107
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.45 GFF6700 Single-stranded-DNA-specific exonuclease RecJ low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.41 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.45 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.45 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
Xanthobacter sp. DMC5 0.62 GFF749 UvrABC system protein A 0.21 GFF1333 Single-stranded-DNA-specific exonuclease RecJ
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.43 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ low > 48
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.24 Rru_A2408 RecJ exonuclease (NCBI)
Sphingobium sp. HT1-2 0.61 GFF1696 Excinuclease ABC subunit A 0.20 GFF3095 Single-stranded-DNA-specific exonuclease RecJ
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.24 TX73_012960 single-stranded-DNA-specific exonuclease RecJ
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.21 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq)
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.22 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.25 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ
Agrobacterium fabrum C58 0.60 Atu1513 ABC excinuclease subunit A 0.21 Atu1586 single-stranded-DNA-specific exonuclease
Rhizobium sp. OAE497 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.21 ABIE40_RS08655 single-stranded-DNA-specific exonuclease RecJ
Sinorhizobium meliloti 1021 0.59 SMc01235 excinuclease ABC subunit A 0.17 SMc00292 single-stranded-DNA-specific exonuclease
Bosea sp. OAE506 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ low > 77
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.22 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.25 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ low > 79
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.25 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ
Bacteroides thetaiotaomicron VPI-5482 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.25 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file)
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.26 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.25 CA264_17545 single-stranded-DNA-specific exonuclease RecJ low > 74
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.26 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ low > 67
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ low > 61
Cellulophaga baltica 18 0.49 M666_RS15455 excinuclease ABC subunit UvrA 0.23 M666_RS04300 single-stranded-DNA-specific exonuclease RecJ 0.75 38
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.26 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS25080 excinuclease ABC subunit A 0.26 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.25 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.22 DVU0904 recJ single-stranded-DNA-specific exonuclease RecJ (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.45 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.23 DvMF_1134 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 51

Not shown: 11 genomes with orthologs for PS417_25395 only; 0 genomes with orthologs for PS417_22855 only