Conservation of cofitness between GFF1934 and GFF1716 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 1.0 GFF1716 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.88 2
Escherichia coli BW25113 0.97 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.97 b3741 gidA glucose-inhibited division protein A (NCBI) 0.50 2
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.97 OHPLBJKB_04312 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Escherichia coli BL21 0.97 ECD_02243 tRNA pseudouridine(38-40) synthase 0.97 ECD_03625 5-methylaminomethyl-2-thiouridine modification at tRNA U34 — —
Escherichia coli ECOR27 0.97 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.97 NOLOHH_06920 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC101 0.96 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.97 MCAODC_05290 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECOR38 0.96 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.97 HEPCGN_13500 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 85
Escherichia coli ECRC102 0.96 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.97 NIAGMN_12540 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC99 0.96 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.97 KEDOAH_13365 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC98 0.96 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.97 JDDGAC_18405 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli Nissle 1917 0.96 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.97 ECOLIN_RS21515 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 52
Escherichia coli ECRC101 0.96 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.97 OKFHMN_14785 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC62 0.96 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.97 BNILDI_04605 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia fergusonii Becca 0.96 EFB2_01540 tRNA pseudouridine synthase A 0.97 EFB2_04892 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG low > 86
Enterobacter sp. TBS_079 0.92 MPMX20_03253 tRNA pseudouridine synthase A 0.95 MPMX20_04626 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.39 38
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.95 EX28DRAFT_4017 glucose-inhibited division protein A — —
Klebsiella michiganensis M5al 0.90 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.95 BWI76_RS00230 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.92 HER17_RS21600 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Pantoea sp. MT58 0.80 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.91 IAI47_00300 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 76
Erwinia tracheiphila SCR3 0.80 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.87 LU632_RS24815 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Serratia liquefaciens MT49 0.80 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.88 IAI46_25110 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 86
Dickeya dianthicola ME23 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.90 DZA65_RS22360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.90 HGI48_RS21380 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.90 DDA3937_RS21605 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.59 45
Rahnella sp. WP5 0.73 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.90 EX31_RS06140 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.78 10
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.80 CSW01_14055 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 62
Shewanella sp. ANA-3 0.70 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.76 Shewana3_0002 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.69 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.75 Sama_3655 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) — —
Shewanella loihica PV-4 0.69 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.77 Shew_3856 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) — —
Alteromonas macleodii MIT1002 0.65 MIT1002_02529 tRNA pseudouridine synthase A 0.74 MIT1002_04124 Glucose-inhibited division protein A low > 70
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1483 pseudouridylate synthase I 0.72 B158DRAFT_0377 glucose-inhibited division protein A 0.76 37
Pseudomonas sp. S08-1 0.56 OH686_04450 tRNA pseudouridine(38-40) synthase 0.69 OH686_12660 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas putida KT2440 0.56 PP_1994 tRNA pseudouridine (38-40)synthase 0.69 PP_0004 tRNA uridine 5-carboxymethylaminomethyl modification enzyme — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.70 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Pseudomonas fluorescens SBW25 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.70 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.69 PfGW456L13_671 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.70 Pf1N1B4_1934 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas simiae WCS417 0.54 PS417_18565 pseudouridine synthase 0.70 PS417_28520 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.70 Pf6N2E2_4203 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_21435 pseudouridine synthase 0.69 AO356_11665 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Pseudomonas sp. RS175 0.53 PFR28_02817 tRNA pseudouridine synthase A 0.70 PFR28_04587 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_20660 pseudouridine synthase 0.70 AO353_10445 tRNA uridine 5-carboxymethylaminomethyl modification protein low > 101
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1662 tRNA pseudouridine synthase 0.70 Psyr_5132 Glucose-inhibited division protein A subfamily 0.39 52
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1662 tRNA pseudouridine synthase 0.70 Psyr_5132 Glucose-inhibited division protein A subfamily 0.37 8
Marinobacter adhaerens HP15 0.52 HP15_1829 tRNA pseudouridine synthase A 0.68 HP15_3690 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas stutzeri RCH2 0.52 Psest_2585 pseudouridylate synthase I 0.69 Psest_4365 glucose-inhibited division protein A — —
Dechlorosoma suillum PS 0.49 Dsui_3194 pseudouridylate synthase I 0.67 Dsui_0846 glucose-inhibited division protein A 0.77 43
Acinetobacter radioresistens SK82 0.49 MPMX26_00352 tRNA pseudouridine synthase A 0.64 MPMX26_01147 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG low > 36
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS16485 tRNA pseudouridine synthase A 0.69 HSERO_RS23965 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS33885 tRNA pseudouridine synthase A 0.69 BPHYT_RS19440 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Lysobacter sp. OAE881 0.46 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.64 ABIE51_RS01205 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 62
Paraburkholderia graminis OAS925 0.46 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.70 ABIE53_000264 tRNA uridine 5-carboxymethylaminomethyl modification enzyme — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.70 H281DRAFT_02385 tRNA uridine 5-carboxymethylaminomethyl modification enzyme — —
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.69 QEN71_RS29345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.64 Xcc-8004.488.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 74
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.63 LRK55_RS09830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.63 LRK54_RS10190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.51 8
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.65 Ac3H11_4956 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.69 4
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.69 RALBFv3_RS08865 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Ralstonia solanacearum UW163 0.43 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.69 UW163_RS04745 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.64 ABZR86_RS15760 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.52 3
Ralstonia solanacearum GMI1000 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.69 RS_RS16675 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.69 RPSI07_RS08410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.65 GFF2018 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 90
Castellaniella sp019104865 MT123 0.42 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.61 ABCV34_RS11725 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.62 OKGIIK_13725 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.69 ABZR87_RS04125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 80
Variovorax sp. SCN45 0.41 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.66 GFF3336 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG — —
Variovorax sp. OAS795 0.40 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.66 ABID97_RS02905 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS14370 tRNA pseudouridine synthase A 0.68 RR42_RS20215 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Bosea sp. OAE506 0.34 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA 0.42 ABIE41_RS04685 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Azospirillum sp. SherDot2 0.32 MPMX19_02005 tRNA pseudouridine synthase A 0.47 MPMX19_02569 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Azospirillum brasilense Sp245 0.32 AZOBR_RS03570 tRNA pseudouridine synthase A 0.47 AZOBR_RS01810 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Rhodospirillum rubrum S1H 0.30 Rru_A3352 Pseudouridylate synthase (NCBI) 0.47 Rru_A3625 Glucose-inhibited division protein A subfamily (NCBI) — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA 0.46 AMB_RS00010 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 64
Sinorhizobium meliloti 1021 0.30 SMc01099 tRNA pseudouridine synthase A 0.47 SMc02798 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA — —
Agrobacterium fabrum C58 0.29 Atu0368 tRNA pseudouridine synthase I 0.43 Atu2831 glucose inhibited division protein A 0.67 2
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00280 tRNA pseudouridine synthase A 0.45 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 67
Caulobacter crescentus NA1000 0.29 CCNA_00280 tRNA pseudouridine synthase A 0.45 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA 0.44 A4249_RS13705 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 48
Rhodopseudomonas palustris CGA009 0.29 TX73_003225 tRNA pseudouridine(38-40) synthase TruA 0.44 TX73_001530 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 86
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2207 truA tRNA pseudouridine synthase A 0.44 Synpcc7942_2423 gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.39 Ga0059261_2205 glucose-inhibited division protein A low > 68
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_17725 tRNA pseudouridine synthase A 0.43 CA264_17285 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c05650 tRNA pseudouridine synthase A 0.44 PGA1_c35100 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Bacteroides ovatus ATCC 8483 0.26 BACOVA_05075 tRNA pseudouridine synthase A 0.43 BACOVA_01367 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.39 9
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.42 ABI39_RS05405 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 72
Dinoroseobacter shibae DFL-12 0.26 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 0.45 Dshi_3455 glucose inhibited division protein A (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.42 HMPREF1058_RS11535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 67
Bacteroides thetaiotaomicron VPI-5482 0.26 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) 0.43 BT3268 glucose-inhibited division protein A (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.43 CA265_RS21200 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA 0.42 HMPREF1181_RS02105 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 56
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA 0.42 HMPREF1078_RS06305 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1728 pseudouridylate synthase I 0.47 Echvi_1059 glucose-inhibited division protein A — —
Fusobacterium nucleatum SB010 0.24 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA 0.47 HUW76_10170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0911 truA tRNA pseudouridine synthase A (TIGR) 0.51 DVU1828 gidA glucose inhibited division protein A (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.22 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) 0.51 DvMF_0551 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) low > 51
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA 0.44 ABZR88_RS20615 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —

Not shown: 5 genomes with orthologs for GFF1934 only; 1 genomes with orthologs for GFF1716 only