Conservation of cofitness between Psest_0532 and Psest_1506 in Pseudomonas stutzeri RCH2

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 1.0 Psest_1506 queuosine biosynthesis protein QueC 0.33 2
Pseudomonas sp. S08-1 0.88 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.85 OH686_19180 queuosine biosynthesis protein QueC low > 80
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.88 AO353_03535 7-cyano-7-deazaguanine synthase low > 101
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.87 Pf1N1B4_628 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.85 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.85 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.88 AO356_18070 7-cyano-7-deazaguanine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.89 Pf6N2E2_5546 Queuosine Biosynthesis QueC ATPase low > 103
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.85 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas fluorescens SBW25 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.86 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Pseudomonas sp. RS175 0.85 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.88 PFR28_03403 7-cyano-7-deazaguanine synthase low > 88
Pseudomonas simiae WCS417 0.85 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.87 PS417_22400 7-cyano-7-deazaguanine synthase low > 88
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.86 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Marinobacter adhaerens HP15 0.71 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.34 HP15_3814 ExsB protein low > 73
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.69 B158DRAFT_1146 preQ(0) biosynthesis protein QueC low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.34 GFF4360 Queuosine Biosynthesis QueC ATPase low > 78
Escherichia coli ECOR38 0.69 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.33 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC low > 85
Escherichia coli ECOR27 0.69 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.33 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC low > 57
Escherichia coli ECRC99 0.69 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli BW25113 0.69 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.33 b0444 ybaX predicted aluminum resistance protein (NCBI) low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.33 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli BL21 0.69 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.32 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis low > 60
Escherichia coli ECRC102 0.69 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia fergusonii Becca 0.69 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.33 EFB2_03613 7-cyano-7-deazaguanine synthase low > 86
Escherichia coli ECRC98 0.69 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.33 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase 0.84 42
Escherichia coli ECRC101 0.69 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECRC101 0.69 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.66 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC 0.47 45
Escherichia coli ECRC62 0.69 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.33 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.33 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC — —
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC low > 52
Pectobacterium carotovorum WPP14 0.69 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC low > 75
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.68 Xcc-8004.1450.1 Queuosine Biosynthesis QueC ATPase low > 74
Pantoea sp. MT58 0.68 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 IAI47_14620 7-cyano-7-deazaguanine synthase QueC low > 76
Rhodanobacter denitrificans MT42 0.68 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC low > 63
Shewanella amazonensis SB2B 0.68 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.31 Sama_1826 ExsB protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.68 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.29 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) low > 73
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC 0.56 17
Erwinia tracheiphila SCR3 0.68 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.30 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.33 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC low > 71
Shewanella oneidensis MR-1 0.68 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.29 SO2503 exsB exsB protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.68 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.33 MIT1002_01263 7-cyano-7-deazaguanine synthase low > 70
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.33 EX28DRAFT_2526 queuosine biosynthesis protein QueC low > 76
Dickeya dadantii 3937 0.67 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC low > 74
Serratia liquefaciens MT49 0.67 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.31 IAI46_05045 7-cyano-7-deazaguanine synthase QueC low > 86
Dickeya dianthicola ME23 0.67 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC low > 75
Shewanella loihica PV-4 0.67 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.30 Shew_2062 exsB protein (RefSeq) — —
Lysobacter sp. OAE881 0.67 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC low > 62
Enterobacter sp. TBS_079 0.67 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.33 MPMX20_01035 7-cyano-7-deazaguanine synthase low > 85
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.31 CSW01_06875 7-cyano-7-deazaguanine synthase QueC low > 62
Rahnella sp. WP5 0.66 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC low > 89
Dechlorosoma suillum PS 0.65 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.66 Dsui_0549 queuosine biosynthesis protein QueC low > 51
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC low > 153
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.24 BPHYT_RS01500 7-cyano-7-deazaguanine synthase low > 109
Castellaniella sp019104865 MT123 0.63 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.22 ABCV34_RS10950 7-cyano-7-deazaguanine synthase QueC low > 48
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.23 H281DRAFT_02232 preQ(0) biosynthesis protein QueC low > 103
Ralstonia solanacearum PSI07 0.63 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 RPSI07_RS20285 7-cyano-7-deazaguanine synthase QueC low > 81
Ralstonia solanacearum GMI1000 0.62 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 RS_RS03715 7-cyano-7-deazaguanine synthase low > 80
Acinetobacter radioresistens SK82 0.62 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.60 MPMX26_02175 7-cyano-7-deazaguanine synthase low > 36
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 RALBFv3_RS12940 7-cyano-7-deazaguanine synthase QueC low > 76
Ralstonia solanacearum UW163 0.62 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 UW163_RS00625 7-cyano-7-deazaguanine synthase QueC — —
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 ABZR87_RS09000 7-cyano-7-deazaguanine synthase QueC low > 80
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.68 RR42_RS15445 7-cyano-7-deazaguanine synthase low > 128
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 0.22 HSERO_RS20880 7-cyano-7-deazaguanine synthase low > 78
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.23 Ac3H11_4838 Queuosine Biosynthesis QueC ATPase low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF613 tRNA-i(6)A37 methylthiotransferase 0.20 GFF1402 Queuosine Biosynthesis QueC ATPase low > 90
Variovorax sp. SCN45 0.60 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.25 GFF5214 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) low > 127
Azospirillum sp. SherDot2 0.48 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.61 MPMX19_00425 7-cyano-7-deazaguanine synthase low > 112
Bosea sp. OAE506 0.46 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.25 ABIE41_RS11340 7-cyano-7-deazaguanine synthase QueC low > 77
Azospirillum brasilense Sp245 0.46 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.59 AZOBR_RS04150 7-cyano-7-deazaguanine synthase low > 97
Magnetospirillum magneticum AMB-1 0.45 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.61 AMB_RS20345 7-cyano-7-deazaguanine synthase low > 64
Sinorhizobium meliloti 1021 0.45 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase 0.29 SM_b20940 hypothetical protein low > 103
Caulobacter crescentus NA1000 0.45 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.25 CCNA_03262 queuosine biosynthesis protein QueC low > 66
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.25 CCNA_03262 queuosine biosynthesis protein QueC low > 67
Phaeobacter inhibens DSM 17395 0.44 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.28 PGA1_c05600 queuosine biosynthesis protein QueC low > 62
Agrobacterium fabrum C58 0.44 Atu0356 miaB protein 0.28 Atu3346 succinoglycan biosynthesis regulator low > 89
Rhodospirillum rubrum S1H 0.43 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.59 Rru_A1957 ExsB (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.42 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 TX73_014550 7-cyano-7-deazaguanine synthase QueC low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 A4249_RS08700 7-cyano-7-deazaguanine synthase QueC — —
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.61 Ga0059261_3209 queuosine biosynthesis protein QueC low > 68
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.44 Synpcc7942_1333 ExsB low > 38
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.28 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC low > 56
Bacteroides ovatus ATCC 8483 0.34 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.27 BACOVA_04309 protein ExsB low > 94
Bacteroides thetaiotaomicron VPI-5482 0.34 BT3195 conserved hypothetical protein (NCBI ptt file) 0.27 BT1566 putative aluminum resistance protein (NCBI ptt file) — —
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU0984 miaB tRNA-i(6)A37 modification enzyme MiaB (TIGR) 0.23 DVU2659 exsB protein (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.29 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC low > 67
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.29 ABI39_RS11300 7-cyano-7-deazaguanine synthase QueC low > 72
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.23 HMPREF1078_RS14060 7-cyano-7-deazaguanine synthase QueC low > 61
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_1330 RNA modification enzyme, MiaB family (RefSeq) 0.24 DvMF_1125 exsB protein (RefSeq) low > 51
Methanococcus maripaludis S2 0.20 MMP_RS02195 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 0.28 MMP_RS01240 7-cyano-7-deazaguanine synthase QueC low > 25
Methanococcus maripaludis JJ 0.19 MMJJ_RS03110 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase 0.27 MMJJ_RS04135 7-cyano-7-deazaguanine synthase QueC low > 28

Not shown: 10 genomes with orthologs for Psest_0532 only; 2 genomes with orthologs for Psest_1506 only