Conservation of cofitness between EX31_RS07960 and EX31_RS15000 in Rahnella sp. WP5

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 EX31_RS15000 branched-chain amino acid transaminase 0.62 20
Serratia liquefaciens MT49 0.72 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.95 IAI46_24350 branched-chain-amino-acid transaminase low > 86
Pectobacterium carotovorum WPP14 0.66 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 HER17_RS01070 branched-chain amino acid transaminase low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.92 HGI48_RS20300 branched-chain-amino-acid transaminase low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.93 DDA3937_RS20160 branched-chain-amino-acid transaminase low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.93 DZA65_RS21340 branched-chain amino acid transaminase low > 75
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.90 EX28DRAFT_4442 branched-chain amino acid aminotransferase, group I low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.91 MPMX20_04500 Branched-chain-amino-acid aminotransferase low > 85
Pantoea sp. MT58 0.60 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 IAI47_01030 branched-chain amino acid transaminase low > 76
Escherichia coli ECOR38 0.60 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 HEPCGN_13355 ilvE branched-chain-amino-acid transaminase low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 ECOLIN_RS21660 branched-chain-amino-acid transaminase low > 55
Escherichia coli BW25113 0.60 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.90 b3770 ilvE branched-chain amino acid aminotransferase (NCBI) 0.24 66
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 OHPLBJKB_04283 Branched-chain-amino-acid aminotransferase low > 73
Escherichia coli ECRC102 0.60 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 NIAGMN_12400 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC98 0.60 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 JDDGAC_18265 ilvE branched-chain-amino-acid transaminase low > 86
Escherichia coli ECRC100 0.60 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 OKFHMN_14645 ilvE branched-chain-amino-acid transaminase low > 80
Escherichia coli ECRC99 0.60 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 KEDOAH_13505 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC101 0.60 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 MCAODC_05150 ilvE branched-chain-amino-acid transaminase low > 87
Escherichia coli ECRC62 0.59 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 BNILDI_04745 ilvE branched-chain-amino-acid transaminase low > 75
Escherichia coli ECOR27 0.59 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 NOLOHH_06780 ilvE branched-chain-amino-acid transaminase low > 75
Escherichia fergusonii Becca 0.59 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 EFB2_04866 Branched-chain-amino-acid aminotransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.91 GFF2902 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 78
Escherichia coli BL21 0.59 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.90 ECD_03648 branched-chain amino acid aminotransferase low > 61
Klebsiella michiganensis M5al 0.59 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.91 BWI76_RS00970 branched chain amino acid aminotransferase low > 92
Erwinia tracheiphila SCR3 0.55 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 LU632_RS24405 branched-chain amino acid transaminase low > 74
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 CSW01_00145 branched-chain-amino-acid transaminase low > 62
Shewanella amazonensis SB2B 0.41 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.19 Sama_3299 branched-chain amino acid aminotransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.41 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.17 SO0340 ilvE branched-chain amino acid aminotransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.17 Shewana3_3830 branched-chain amino acid aminotransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.68 Shew_0291 branched-chain amino acid aminotransferase (RefSeq) low > 60
Marinobacter adhaerens HP15 0.34 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.45 HP15_436 branched-chain-amino-acid aminotransferase — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 ABZR86_RS15965 branched-chain amino acid transaminase low > 74
Pseudomonas stutzeri RCH2 0.34 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.47 Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 67
Rhodanobacter denitrificans MT42 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 LRK55_RS09980 branched-chain amino acid transaminase low > 63
Acinetobacter radioresistens SK82 0.32 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 MPMX26_00445 Branched-chain-amino-acid aminotransferase low > 36
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 LRK54_RS10340 branched-chain amino acid transaminase low > 59
Castellaniella sp019104865 MT123 0.32 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 ABCV34_RS07930 branched-chain amino acid transaminase low > 48
Pseudomonas sp. S08-1 0.32 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.48 OH686_09695 branched-chain amino acid aminotransferase low > 80
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 OKGIIK_11840 ilvE branched-chain amino acid transaminase low > 52
Pseudomonas sp. RS175 0.31 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.20 PFR28_02449 putative branched-chain-amino-acid aminotransferase low > 88
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_19055 23S rRNA methyltransferase 0.20 AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.19 Pf6N2E2_477 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 103
Dechlorosoma suillum PS 0.31 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.49 Dsui_3339 branched-chain amino acid aminotransferase, group I low > 51
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.19 Xcc-8004.4199.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 74
Pseudomonas simiae WCS417 0.31 PS417_20155 23S rRNA methyltransferase 0.19 PS417_17565 branched-chain amino acid aminotransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.20 Pf1N1B4_4476 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 87
Pseudomonas fluorescens SBW25 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.20 PFLU_RS19375 branched-chain amino acid aminotransferase low > 109
Ralstonia solanacearum GMI1000 0.31 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 RS_RS02840 branched-chain amino acid transaminase low > 80
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.20 PFLU_RS19375 branched-chain amino acid aminotransferase low > 109
Alteromonas macleodii MIT1002 0.30 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.16 MIT1002_00377 Branched-chain-amino-acid aminotransferase 2 low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.21 Psyr_1148 branched chain amino acid aminotransferase apoenzyme low > 86
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS13170 23S rRNA methyltransferase 0.19 RR42_RS25890 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 128
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.21 Psyr_1148 branched chain amino acid aminotransferase apoenzyme low > 86
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 RALBFv3_RS12155 branched-chain amino acid transaminase low > 76
Ralstonia solanacearum UW163 0.30 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 UW163_RS01455 branched-chain amino acid transaminase — —
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 RPSI07_RS21175 branched-chain amino acid transaminase low > 81
Lysobacter sp. OAE881 0.30 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 ABIE51_RS16505 branched-chain amino acid transaminase low > 62
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 ABZR87_RS18540 branched-chain amino acid aminotransferase 0.33 58
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.27 PfGW456L13_4923 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 87
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS14825 23S rRNA methyltransferase 0.45 HSERO_RS03330 branched-chain amino acid aminotransferase low > 78
Pseudomonas putida KT2440 0.29 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.18 PP_3511 Branched-chain-amino-acid aminotransferase low > 96
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS09125 23S rRNA methyltransferase 0.44 BPHYT_RS16285 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 109
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.45 QEN71_RS02410 branched-chain amino acid transaminase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.44 H281DRAFT_04193 branched chain amino acid aminotransferase apoenzyme low > 103
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_02715 23S rRNA methyltransferase 0.19 AO353_26655 branched-chain amino acid aminotransferase 0.26 41
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.47 GFF1835 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 90
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.47 Ac3H11_3369 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 79
Variovorax sp. SCN45 0.27 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.45 GFF5079 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 127
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.30 Synpcc7942_1029 ilvE branched-chain amino acid aminotransferase low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.18 Echvi_2202 branched-chain amino acid aminotransferase, group II low > 79
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.18 HMPREF1078_RS07855 branched-chain amino acid aminotransferase low > 61
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) 0.48 DvMF_2268 branched-chain amino acid aminotransferase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.47 DVU3197 ilvE branched-chain amino acid aminotransferase (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.16 HMPREF1058_RS02220 branched-chain amino acid aminotransferase low > 67
Dinoroseobacter shibae DFL-12 0.16 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.25 Dshi_3301 branched-chain amino acid aminotransferase (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.17 ABZR88_RS22095 branched-chain amino acid aminotransferase — —
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.16 ABI39_RS01415 branched-chain amino acid aminotransferase low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.31 CA264_06940 branched-chain amino acid aminotransferase low > 74
Sinorhizobium meliloti 1021 0.15 SMc00974 RNA methyltransferase 0.20 SMc02896 branched-chain amino acid aminotransferase low > 103
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.17 TX73_022650 branched-chain amino acid aminotransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.15 BT0643 RNA methyltransferase (NCBI ptt file) 0.17 BT3892 branched-chain amino acid aminotransferase (NCBI ptt file) — —
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.31 AMB_RS02850 branched-chain amino acid aminotransferase — —
Bosea sp. OAE506 0.15 ABIE41_RS22255 RNA methyltransferase 0.27 ABIE41_RS11405 branched-chain amino acid aminotransferase low > 77
Bacteroides ovatus ATCC 8483 0.15 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA 0.29 BACOVA_03679 branched-chain-amino-acid transaminase low > 94
Caulobacter crescentus NA1000 Δfur 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.30 CCNA_03024 branched-chain amino acid aminotransferase low > 67
Caulobacter crescentus NA1000 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.30 CCNA_03024 branched-chain amino acid aminotransferase low > 66
Phaeobacter inhibens DSM 17395 0.14 PGA1_c34810 putative RNA methyltransferase 0.28 PGA1_c34110 branched-chain-amino-acid aminotransferase IlvE low > 62
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.30 AZOBR_RS16425 branched-chain amino acid aminotransferase low > 97
Rhizobium sp. OAE497 0.13 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.18 ABIE40_RS11350 branched-chain amino acid aminotransferase low > 107
Agrobacterium fabrum C58 0.13 Atu0735 RNA methyltransferase 0.19 Atu0871 branched-chain-amino-acid aminotransferase low > 89
Azospirillum sp. SherDot2 0.13 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.17 MPMX19_02406 Branched-chain-amino-acid aminotransferase low > 112
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.22 Ga0059261_3811 branched-chain amino acid aminotransferase, group II low > 68
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.32 Rru_A2223 Branched-chain amino acid aminotransferase I (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.28 A4249_RS09820 branched-chain amino acid aminotransferase — —
Bifidobacterium breve UCC2003 0.10 BBR_RS16615 class I SAM-dependent RNA methyltransferase 0.17 BBR_RS15210 branched-chain amino acid aminotransferase low > 34

Not shown: 2 genomes with orthologs for EX31_RS07960 only; 7 genomes with orthologs for EX31_RS15000 only