Conservation of cofitness between EX31_RS07960 and EX31_RS07560 in Rahnella sp. WP5

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 EX31_RS07560 ATP-dependent chaperone ClpB 0.63 16
Serratia liquefaciens MT49 0.72 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 IAI46_03995 ATP-dependent chaperone ClpB low > 86
Pectobacterium carotovorum WPP14 0.66 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 HER17_RS05410 ATP-dependent chaperone ClpB low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 HGI48_RS16225 ATP-dependent chaperone ClpB low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 DDA3937_RS16100 ATP-dependent chaperone ClpB low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 DZA65_RS17320 ATP-dependent chaperone ClpB low > 75
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.87 EX28DRAFT_2693 ATP-dependent chaperone ClpB low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 MPMX20_03461 Chaperone protein ClpB low > 85
Pantoea sp. MT58 0.60 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 IAI47_04435 ATP-dependent chaperone ClpB low > 76
Escherichia coli ECOR38 0.60 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 HEPCGN_20390 clpB ATP-dependent chaperone ClpB low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 ECOLIN_RS14665 ATP-dependent chaperone ClpB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 OHPLBJKB_01114 Chaperone protein ClpB low > 73
Escherichia coli BW25113 0.60 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.87 b2592 clpB protein disaggregation chaperone (NCBI) low > 76
Escherichia coli ECRC100 0.60 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 OKFHMN_21265 clpB ATP-dependent chaperone ClpB low > 80
Escherichia coli ECRC99 0.60 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 KEDOAH_06955 clpB ATP-dependent chaperone ClpB — —
Escherichia coli ECRC98 0.60 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 JDDGAC_24930 clpB ATP-dependent chaperone ClpB low > 86
Escherichia coli ECRC102 0.60 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 NIAGMN_19035 clpB ATP-dependent chaperone ClpB — —
Escherichia coli ECRC101 0.60 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 MCAODC_11795 clpB ATP-dependent chaperone ClpB low > 87
Escherichia coli ECOR27 0.59 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 NOLOHH_12940 clpB ATP-dependent chaperone ClpB low > 75
Escherichia coli ECRC62 0.59 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 BNILDI_11745 clpB ATP-dependent chaperone ClpB low > 75
Escherichia fergusonii Becca 0.59 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 EFB2_01298 Chaperone protein ClpB low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.87 GFF4184 ClpB protein low > 78
Escherichia coli BL21 0.59 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.87 ECD_02482 protein disaggregation chaperone low > 61
Klebsiella michiganensis M5al 0.59 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.88 BWI76_RS21440 ATP-dependent chaperone ClpB low > 92
Erwinia tracheiphila SCR3 0.55 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.86 LU632_RS16935 clpB ATP-dependent chaperone ClpB low > 74
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 CSW01_03705 chaperone protein ClpB low > 62
Shewanella amazonensis SB2B 0.41 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.78 Sama_2603 clpB protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.41 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.79 SO3577 clpB clpB protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.78 Shewana3_3169 ATPase (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.78 Shew_2948 ATPase (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.73 B158DRAFT_2535 ATP-dependent chaperone ClpB low > 40
Marinobacter adhaerens HP15 0.34 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.74 HP15_529 protein disaggregation chaperone 0.41 6
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.72 ABZR86_RS10940 ATP-dependent chaperone ClpB low > 74
Pseudomonas stutzeri RCH2 0.34 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.69 Psest_0711 ATP-dependent chaperone ClpB low > 67
Rhodanobacter denitrificans MT42 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 LRK55_RS04735 ATP-dependent chaperone ClpB low > 63
Acinetobacter radioresistens SK82 0.32 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 MPMX26_01096 Chaperone protein ClpB low > 36
Castellaniella sp019104865 MT123 0.32 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 ABCV34_RS06205 ATP-dependent chaperone ClpB low > 48
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 LRK54_RS04955 ATP-dependent chaperone ClpB low > 59
Pseudomonas sp. S08-1 0.32 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.69 OH686_16420 ATP-dependent chaperone protein ClpB low > 80
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 OKGIIK_01800 clpB ATP-dependent chaperone ClpB 0.50 18
Pseudomonas sp. RS175 0.31 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.70 PFR28_03746 Chaperone protein ClpB low > 88
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_19055 23S rRNA methyltransferase 0.70 AO356_15935 ATP-dependent chaperone ClpB low > 104
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.72 Xcc-8004.1382.1 ClpB protein low > 74
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.70 Pf6N2E2_5129 ClpB protein low > 103
Dechlorosoma suillum PS 0.31 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.67 Dsui_2161 ATP-dependent chaperone ClpB 0.52 51
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.69 Pf1N1B4_2824 ClpB protein low > 87
Pseudomonas simiae WCS417 0.31 PS417_20155 23S rRNA methyltransferase 0.69 PS417_03830 protein disaggregation chaperone low > 88
Ralstonia solanacearum GMI1000 0.31 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 RS_RS06695 chaperone protein ClpB low > 80
Pseudomonas fluorescens SBW25 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 PFLU_RS03880 ATP-dependent chaperone ClpB low > 109
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 PFLU_RS03880 ATP-dependent chaperone ClpB low > 109
Alteromonas macleodii MIT1002 0.30 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 MIT1002_02677 Heat shock protein F84.1 low > 70
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS13170 23S rRNA methyltransferase 0.65 RR42_RS12455 protein disaggregation chaperone low > 128
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.69 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.69 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 RALBFv3_RS00030 ATP-dependent chaperone ClpB low > 76
Ralstonia solanacearum UW163 0.30 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 UW163_RS13360 ATP-dependent chaperone ClpB — —
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB low > 80
Lysobacter sp. OAE881 0.30 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 ABIE51_RS04925 ATP-dependent chaperone ClpB 0.34 38
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 RPSI07_RS17450 ATP-dependent chaperone ClpB low > 81
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.69 PfGW456L13_1495 ClpB protein low > 87
Pseudomonas putida KT2440 0.29 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 PP_0625 Chaperone protein ClpB low > 96
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS14825 23S rRNA methyltransferase 0.65 HSERO_RS10545 protein disaggregation chaperone low > 78
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS09125 23S rRNA methyltransferase 0.68 BPHYT_RS08990 protein disaggregation chaperone low > 109
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 QEN71_RS22370 ATP-dependent chaperone ClpB low > 153
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.68 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB low > 103
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_02715 23S rRNA methyltransferase 0.69 AO353_14230 ATP-dependent chaperone ClpB low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.63 GFF3942 ClpB protein 0.41 81
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.63 Ac3H11_1474 ClpB protein low > 79
Variovorax sp. SCN45 0.27 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.62 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) low > 127
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.56 Synpcc7942_1089 clpB ATPase low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.50 Echvi_0754 ATP-dependent chaperone ClpB low > 79
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) 0.53 DvMF_0567 ATP-dependent chaperone ClpB (RefSeq) low > 51
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 HMPREF1078_RS00500 ATP-dependent chaperone ClpB low > 61
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.53 DVU1874 clpB ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 HMPREF1058_RS04980 ATP-dependent chaperone ClpB low > 67
Dinoroseobacter shibae DFL-12 0.16 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.57 Dshi_0617 ATPase AAA-2 domain protein (RefSeq) low > 64
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 ABZR88_RS10630 ATP-dependent chaperone ClpB low > 71
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 ABI39_RS18885 ATP-dependent chaperone ClpB low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.52 CA264_14135 ATP-dependent chaperone ClpB low > 74
Sinorhizobium meliloti 1021 0.15 SMc00974 RNA methyltransferase 0.55 SMc02433 ATP-dependent protease low > 103
Fusobacterium nucleatum SB010 0.15 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 HUW76_09935 ATP-dependent chaperone ClpB low > 35
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.56 TX73_023005 ATP-dependent chaperone ClpB low > 86
Bacteroides thetaiotaomicron VPI-5482 0.15 BT0643 RNA methyltransferase (NCBI ptt file) 0.53 BT4597 endopeptidase Clp ATP-binding chain B (NCBI ptt file) low > 81
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.58 AMB_RS07865 ATP-dependent chaperone ClpB low > 64
Bosea sp. OAE506 0.15 ABIE41_RS22255 RNA methyltransferase 0.57 ABIE41_RS23785 ATP-dependent chaperone ClpB low > 77
Bacteroides ovatus ATCC 8483 0.15 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA 0.53 BACOVA_05393 ATP-dependent chaperone protein ClpB low > 94
Caulobacter crescentus NA1000 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.57 CCNA_00922 ClpB protein low > 66
Caulobacter crescentus NA1000 Δfur 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.57 CCNA_00922 ClpB protein low > 67
Phaeobacter inhibens DSM 17395 0.14 PGA1_c34810 putative RNA methyltransferase 0.56 PGA1_c32440 chaperone protein ClpB low > 62
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.59 AZOBR_RS18950 ATPase AAA low > 97
Rhizobium sp. OAE497 0.13 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB low > 107
Agrobacterium fabrum C58 0.13 Atu0735 RNA methyltransferase 0.57 Atu4177 ATP-dependent Clp protease, ATP-binding subunit low > 89
Azospirillum sp. SherDot2 0.13 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.59 MPMX19_02442 Chaperone protein ClpB low > 112
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.59 Ga0059261_1434 ATP-dependent chaperone ClpB low > 68
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.57 Rru_A0753 Chaperone clpB (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.58 A4249_RS11010 ATP-dependent chaperone ClpB low > 48
Bifidobacterium breve UCC2003 0.10 BBR_RS16615 class I SAM-dependent RNA methyltransferase 0.52 BBR_RS19700 ATP-dependent chaperone ClpB low > 34

Not shown: 0 genomes with orthologs for EX31_RS07960 only; 5 genomes with orthologs for EX31_RS07560 only