Conservation of cofitness between ECD_03509 and ECD_04265 in Escherichia coli BL21

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_04265 DNA repair protein 0.74 15
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 1.00 b4389 radA predicted repair protein (NCBI) 0.29 71
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 1.00 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 1.00 ECOLIN_RS25190 DNA repair protein RadA low > 52
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 1.00 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 1.00 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 1.00 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 1.00 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 1.00 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 1.00 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 1.00 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 1.00 HEPCGN_09195 radA DNA repair protein RadA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.98 GFF1057 DNA repair protein RadA low > 78
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.97 EX28DRAFT_3597 DNA repair protein RadA low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.98 MPMX20_00694 DNA repair protein RadA low > 85
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.97 BWI76_RS04165 DNA repair protein RadA low > 92
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.93 IAI47_16345 DNA repair protein RadA low > 76
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.93 IAI46_02945 DNA repair protein RadA low > 86
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.90 HER17_RS19085 DNA repair protein RadA low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.94 LU632_RS02550 radA DNA repair protein RadA low > 74
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.87 DDA3937_RS02420 DNA repair protein RadA low > 74
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.94 EX31_RS04030 DNA repair protein RadA low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.88 HGI48_RS02380 DNA repair protein RadA low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.88 DZA65_RS02485 DNA repair protein RadA low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.80 CSW01_11870 DNA repair protein RadA 0.77 7
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.76 Sama_0981 DNA repair protein RadA (RefSeq) 0.38 48
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.77 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.43 50
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.37 Shew_2807 DNA repair protein RadA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.77 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.53 14
Alteromonas macleodii MIT1002 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG 0.73 MIT1002_02706 Lon protease 2 low > 70
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.62 PP_4644 DNA repair enzyme low > 96
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.63 Psest_3401 DNA repair protein RadA — —
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.64 PfGW456L13_1442 DNA repair protein RadA low > 87
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.64 Pf1N1B4_2768 DNA repair protein RadA 0.27 80
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.64 PS417_24305 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.63 AO353_13980 DNA repair protein RadA 0.48 17
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.69 HP15_487 DNA repair protein RadA 0.79 7
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.64 Pf6N2E2_5076 DNA repair protein RadA 0.27 84
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.63 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.64 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.64 AO356_15680 DNA repair protein RadA 0.35 38
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.57 ABIE51_RS07685 DNA repair protein RadA low > 62
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.58 ABZR86_RS08845 DNA repair protein RadA 0.84 12
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.58 MPMX26_02235 DNA repair protein RadA low > 36
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.58 LRK55_RS02280 DNA repair protein RadA low > 63
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.58 OKGIIK_09580 radA DNA repair protein RadA 0.49 34
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.58 LRK54_RS02525 DNA repair protein RadA low > 59
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.60 B158DRAFT_0877 DNA replication and repair protein RadA 0.59 28
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.54 BPHYT_RS12235 DNA repair protein RadA low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG 0.54 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.54 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.56 QEN71_RS06320 DNA repair protein RadA — —
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.53 RS_RS06880 DNA repair protein RadA — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05675 DNA helicase RecG 0.53 RALBFv3_RS00210 DNA repair protein RadA low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS07950 DNA helicase RecG 0.53 UW163_RS13540 DNA repair protein RadA — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11625 DNA helicase RecG 0.53 RPSI07_RS17270 DNA repair protein RadA 0.42 46
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.54 ABZR87_RS11670 DNA repair protein RadA low > 80
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS17390 ATP-dependent DNA helicase RecG 0.55 RR42_RS12030 DNA repair protein RadA — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.53 HSERO_RS10745 DNA repair protein RadA 0.56 15
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.51 Ac3H11_3371 DNA repair protein RadA low > 79
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.52 ABCV34_RS02345 DNA repair protein RadA low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.50 GFF1833 DNA repair protein RadA low > 90
Dechlorosoma suillum PS 0.41 Dsui_0311 ATP-dependent DNA helicase RecG 0.52 Dsui_2413 DNA repair protein RadA 0.60 24
Variovorax sp. OAS795 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.52 ABID97_RS03770 DNA repair protein RadA low > 91
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.52 GFF5087 DNA repair protein RadA low > 127
Rhizobium sp. OAE497 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.41 ABIE40_RS06280 DNA repair protein RadA low > 107
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.40 Atu1077 DNA repair protein 0.56 9
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG 0.41 PGA1_c10840 DNA repair protein RadA 0.35 25
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.42 MPMX19_00904 DNA repair protein RadA — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.40 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Sinorhizobium meliloti 1021 0.33 SMc00228 ATP-dependent DNA helicase RecG 0.40 SMc00556 DNA repair protein RadA 0.71 8
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.40 ABI39_RS10420 DNA repair protein RadA low > 72
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.42 AZOBR_RS08320 DNA repair protein RadA 0.56 2
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.40 Synpcc7942_1452 radA DNA repair protein RadA — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG 0.42 AMB_RS10555 DNA repair protein RadA — —
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.40 BT2406 putative DNA repair protein (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.40 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.41 HMPREF1078_RS08395 DNA repair protein RadA — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.40 Dshi_2129 DNA repair protein RadA (RefSeq) 0.53 12
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.41 Echvi_1031 DNA repair protein RadA 0.70 16
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS22835 ATP-dependent DNA helicase RecG 0.39 CA265_RS22660 DNA repair protein RadA 0.47 23
Caulobacter crescentus NA1000 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.41 CCNA_01732 DNA repair protein RadA low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.41 CCNA_01732 DNA repair protein RadA low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15020 DNA helicase RecG 0.39 CA264_17125 DNA repair protein RadA 0.45 40
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.39 Ga0059261_0751 DNA repair protein RadA 0.60 9
Fusobacterium nucleatum SB010 0.30 HUW76_01465 ATP-dependent DNA helicase RecG 0.32 HUW76_02270 DNA repair protein RadA low > 35
Rhodospirillum rubrum S1H 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.39 Rru_A0406 DNA repair protein RadA (NCBI) — —
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.41 ABIE41_RS17800 DNA repair protein RadA 0.61 1
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.41 TX73_015980 DNA repair protein RadA 0.50 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.40 ABZR88_RS20495 DNA repair protein RadA low > 71
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG 0.39 A4249_RS03745 DNA repair protein RadA low > 48
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.32 Rv3585 DNA repair protein RadA (DNA repair protein SMS) low > 58

Not shown: 0 genomes with orthologs for ECD_03509 only; 4 genomes with orthologs for ECD_04265 only