Conservation of cofitness between ECD_03509 and ECD_00423 in Escherichia coli BL21

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_00423 gap repair protein 0.83 7
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 1.00 b0472 recR recombination protein RecR (NCBI) 0.48 9
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 1.00 BNILDI_22505 recR recombination mediator RecR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_03202 Recombination protein RecR 0.61 65
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 1.00 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 1.00 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 1.00 NOLOHH_01085 recR recombination mediator RecR low > 57
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 1.00 JDDGAC_11805 recR recombination mediator RecR — —
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 1.00 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 1.00 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 1.00 MCAODC_27380 recR recombination mediator RecR — —
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 1.00 HEPCGN_06770 recR recombination mediator RecR low > 85
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 1.00 OKFHMN_08155 recR recombination mediator RecR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.96 GFF4390 Recombination protein RecR low > 78
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.95 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.96 MPMX20_01074 Recombination protein RecR 0.33 53
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.96 BWI76_RS06830 recombination protein RecR low > 92
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.91 IAI46_05240 recombination protein RecR 0.69 14
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.90 IAI47_14465 recombination protein RecR low > 76
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.89 HER17_RS15695 recombination mediator RecR low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.89 LU632_RS18105 recR recombination mediator RecR low > 74
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.90 DDA3937_RS05790 recombination protein RecR low > 74
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.90 EX31_RS22525 recombination protein RecR low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.89 HGI48_RS05840 recombination protein RecR — —
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.89 DZA65_RS06165 recombination protein RecR low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.80 CSW01_05375 recombination protein RecR low > 62
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.64 Sama_1312 recR recombination protein RecR (RefSeq) 0.40 28
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.65 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.54 9
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.67 Shew_2233 recombination protein RecR (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.64 SO2015 recR recombination protein RecR (NCBI ptt file) 0.44 45
Alteromonas macleodii MIT1002 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG 0.67 MIT1002_02649 Recombination protein RecR low > 70
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.64 PP_4267 Recombination protein RecR low > 96
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.61 Psest_2545 recombination protein RecR — —
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.60 PfGW456L13_4074 Recombination protein RecR 0.34 61
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.61 Pf1N1B4_3864 Recombination protein RecR 0.31 50
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.62 PS417_20800 recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.61 AO353_00675 recombination protein RecR 0.38 46
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.62 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.62 PFLU_RS22415 recombination protein RecR low > 109
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.60 HP15_1883 recombination protein RecR — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.61 Pf6N2E2_2325 Recombination protein RecR 0.49 8
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.60 OH686_02385 recombination protein RecR low > 80
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.61 AO356_02495 recombination protein RecR 0.54 8
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.61 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.61 Psyr_3396 DNA replication and repair protein RecR 0.37 38
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.61 Psyr_3396 DNA replication and repair protein RecR 0.53 9
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.57 ABIE51_RS14010 recombination mediator RecR low > 62
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.57 ABZR86_RS06235 recombination mediator RecR 0.59 54
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.54 MPMX26_01643 Recombination protein RecR low > 36
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.57 LRK55_RS01020 recombination mediator RecR low > 63
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.57 OKGIIK_05655 recR recombination mediator RecR low > 52
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.57 LRK54_RS01250 recombination mediator RecR 0.38 44
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.54 Xcc-8004.4012.1 Recombination protein RecR low > 74
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.62 B158DRAFT_2480 DNA replication and repair protein RecR low > 40
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.48 BPHYT_RS09070 recombination protein RecR low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG 0.48 ABIE53_002048 recombination protein RecR low > 113
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.49 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.48 QEN71_RS22285 recombination mediator RecR — —
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.48 RS_RS05980 recombination protein RecR — —
Ralstonia solanacearum UW163 0.44 UW163_RS07950 DNA helicase RecG 0.48 UW163_RS12640 recombination protein RecR — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05675 DNA helicase RecG 0.48 RALBFv3_RS15170 recombination protein RecR low > 76
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11625 DNA helicase RecG 0.48 RPSI07_RS18205 recombination protein RecR low > 81
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS17390 ATP-dependent DNA helicase RecG 0.49 RR42_RS13270 recombination protein RecR 0.54 4
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.51 ABZR87_RS10810 recombination mediator RecR low > 80
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.50 HSERO_RS18355 recombinase RecR 0.69 1
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 Ac3H11_473 Recombination protein RecR low > 79
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.42 ABCV34_RS15480 recombination mediator RecR low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.51 GFF4253 Recombination protein RecR 0.83 1
Dechlorosoma suillum PS 0.41 Dsui_0311 ATP-dependent DNA helicase RecG 0.52 Dsui_1811 recombination protein RecR 0.89 6
Variovorax sp. OAS795 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.50 ABID97_RS14700 recombination mediator RecR low > 91
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.49 GFF1110 Recombination protein RecR low > 127
Rhizobium sp. OAE497 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.35 ABIE40_RS00300 recombination mediator RecR low > 107
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.35 Atu0093 Recombination protein 0.61 4
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG 0.34 PGA1_c30290 recombination protein RecR 0.51 5
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.35 HMPREF1058_RS18560 recombination protein RecR low > 67
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.38 MPMX19_02195 Recombination protein RecR — —
Sinorhizobium meliloti 1021 0.33 SMc00228 ATP-dependent DNA helicase RecG 0.36 SMc02908 recombination protein RecR 0.69 10
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.35 ABI39_RS14870 recombination protein RecR low > 72
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.37 AZOBR_RS03880 recombinase RecR 0.41 15
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.39 Synpcc7942_1369 recR recombination protein RecR — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG 0.37 AMB_RS20755 recombination protein RecR — —
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.35 BT1081 recombination protein recR (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.35 HMPREF1181_RS16455 recombination protein RecR low > 56
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.36 HMPREF1078_RS07615 recombination mediator RecR — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.36 Dshi_0648 recombination protein RecR (RefSeq) 0.45 14
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.36 Echvi_1987 recombination protein RecR 0.83 7
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS22835 ATP-dependent DNA helicase RecG 0.36 CA265_RS04980 recombination protein RecR 0.73 8
Caulobacter crescentus NA1000 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.34 CCNA_00270 Recombination protein recR low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.34 CCNA_00270 Recombination protein recR low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15020 DNA helicase RecG 0.40 CA264_01105 recombination protein RecR 0.56 10
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.38 Ga0059261_0645 DNA replication and repair protein RecR 0.62 8
Rhodospirillum rubrum S1H 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.39 Rru_A3471 RecR protein (NCBI) — —
Fusobacterium nucleatum SB010 0.30 HUW76_01465 ATP-dependent DNA helicase RecG 0.37 HUW76_08785 recombination protein RecR 0.98 10
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.36 ABIE41_RS04035 recombination mediator RecR — —
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.38 TX73_003195 recombination mediator RecR — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.37 ABZR88_RS10695 recombination mediator RecR low > 71
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG 0.33 A4249_RS15115 recombination mediator RecR low > 48
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.38 Rv3715c Probable recombination protein RecR low > 58

Not shown: 0 genomes with orthologs for ECD_03509 only; 3 genomes with orthologs for ECD_00423 only