Conservation of cofitness between Dsui_2385 and Dsui_1811 in Dechlorosoma suillum PS

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_2385 transcription-repair coupling factor Mfd 1.0 Dsui_1811 recombination protein RecR 0.95 3
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07845 transcription-repair coupling factor 0.72 RR42_RS13270 recombination protein RecR 0.49 6
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS13240 transcription-repair coupling factor 0.70 ABZR87_RS10810 recombination mediator RecR low > 80
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15180 transcription-repair coupling factor 0.68 HSERO_RS18355 recombinase RecR 0.43 22
Paraburkholderia graminis OAS925 0.64 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.70 ABIE53_002048 recombination protein RecR low > 113
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_00880 transcription-repair coupling factor 0.69 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS01445 transcription-repair coupling factor 0.67 RALBFv3_RS15170 recombination protein RecR low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS14755 transcription-repair coupling factor 0.67 UW163_RS12640 recombination protein RecR — —
Ralstonia solanacearum GMI1000 0.63 RS_RS08275 transcription-repair coupling factor 0.67 RS_RS05980 recombination protein RecR low > 80
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS09290 helicase 0.69 BPHYT_RS09070 recombination protein RecR low > 109
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS22060 transcription-repair coupling factor 0.70 QEN71_RS22285 recombination mediator RecR low > 153
Ralstonia solanacearum PSI07 0.63 RPSI07_RS16040 transcription-repair coupling factor 0.67 RPSI07_RS18205 recombination protein RecR low > 81
Variovorax sp. OAS795 0.60 ABID97_RS17285 transcription-repair coupling factor 0.61 ABID97_RS14700 recombination mediator RecR low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF4934 Transcription-repair coupling factor 0.57 GFF4253 Recombination protein RecR low > 90
Acidovorax sp. GW101-3H11 0.59 Ac3H11_328 Transcription-repair coupling factor 0.56 Ac3H11_473 Recombination protein RecR low > 79
Variovorax sp. SCN45 0.59 GFF412 Transcription-repair coupling factor 0.60 GFF1110 Recombination protein RecR low > 127
Castellaniella sp019104865 MT123 0.55 ABCV34_RS08660 transcription-repair coupling factor 0.59 ABCV34_RS15480 recombination mediator RecR low > 48
Pseudomonas stutzeri RCH2 0.48 Psest_1653 transcription-repair coupling factor (mfd) 0.53 Psest_2545 recombination protein RecR 0.54 8
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_2278 Transcription-repair coupling factor 0.52 Pf6N2E2_2325 Recombination protein RecR 0.34 72
Pseudomonas sp. S08-1 0.48 OH686_21990 transcription-repair coupling factor 0.52 OH686_02385 recombination protein RecR low > 80
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_02270 transcription-repair coupling factor 0.52 AO356_02495 recombination protein RecR 0.43 60
Pseudomonas sp. RS175 0.47 PFR28_01123 Transcription-repair-coupling factor 0.53 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_00435 transcription-repair coupling factor 0.52 AO353_00675 recombination protein RecR 0.48 12
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_1896 transcription-repair coupling factor 0.51 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_1896 transcription-repair coupling factor 0.51 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas simiae WCS417 0.47 PS417_07635 transcription-repair coupling factor 0.52 PS417_20800 recombination protein RecR 0.34 6
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4027 Transcription-repair coupling factor 0.53 PfGW456L13_4074 Recombination protein RecR 0.32 12
Pseudomonas fluorescens SBW25 0.47 PFLU_RS07710 transcription-repair coupling factor 0.52 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_3916 Transcription-repair coupling factor 0.52 Pf1N1B4_3864 Recombination protein RecR low > 87
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS07710 transcription-repair coupling factor 0.52 PFLU_RS22415 recombination protein RecR low > 109
Alteromonas macleodii MIT1002 0.46 MIT1002_01646 Transcription-repair-coupling factor 0.55 MIT1002_02649 Recombination protein RecR low > 70
Pseudomonas putida KT2440 0.46 PP_2148 transcription-repair coupling factor 0.51 PP_4267 Recombination protein RecR low > 96
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS02040 transcription-repair coupling factor 0.55 LRK54_RS01250 recombination mediator RecR low > 59
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_1800 transcription-repair coupling factor 0.54 B158DRAFT_2480 DNA replication and repair protein RecR low > 40
Rhodanobacter denitrificans MT42 0.46 LRK55_RS01815 transcription-repair coupling factor 0.55 LRK55_RS01020 recombination mediator RecR low > 63
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS21210 transcription-repair coupling factor 0.55 ABZR86_RS06235 recombination mediator RecR 0.87 1
Marinobacter adhaerens HP15 0.45 HP15_2257 transcription-repair-coupling factor 0.53 HP15_1883 recombination protein RecR — —
Shewanella sp. ANA-3 0.44 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.52 Shewana3_2444 recR recombination protein RecR (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_09445 transcription-repair coupling factor 0.55 CSW01_05375 recombination protein RecR low > 62
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_09105 mfd transcription-repair coupling factor 0.55 OKGIIK_05655 recR recombination mediator RecR low > 52
Shewanella oneidensis MR-1 0.44 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.52 SO2015 recR recombination protein RecR (NCBI ptt file) 0.25 40
Pantoea sp. MT58 0.44 IAI47_11975 transcription-repair coupling factor 0.54 IAI47_14465 recombination protein RecR low > 76
Escherichia coli ECOR38 0.44 HEPCGN_24015 mfd transcription-repair coupling factor 0.53 HEPCGN_06770 recR recombination mediator RecR low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02552 Transcription-repair-coupling factor 0.53 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli BW25113 0.44 b1114 mfd transcription-repair coupling factor (NCBI) 0.53 b0472 recR recombination protein RecR (NCBI) 0.51 3
Escherichia coli ECRC98 0.44 JDDGAC_07130 mfd transcription-repair coupling factor 0.53 JDDGAC_11805 recR recombination mediator RecR — —
Escherichia coli ECRC62 0.44 BNILDI_19160 mfd transcription-repair coupling factor 0.53 BNILDI_22505 recR recombination mediator RecR — —
Escherichia coli ECRC102 0.44 NIAGMN_24360 mfd transcription-repair coupling factor 0.53 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli ECRC99 0.44 KEDOAH_24285 mfd transcription-repair coupling factor 0.53 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC101 0.44 OKFHMN_03470 mfd transcription-repair coupling factor 0.53 OKFHMN_08155 recR recombination mediator RecR — —
Escherichia coli ECOR27 0.44 NOLOHH_20995 mfd transcription-repair coupling factor 0.53 NOLOHH_01085 recR recombination mediator RecR low > 57
Escherichia fergusonii Becca 0.44 EFB2_02861 Transcription-repair-coupling factor 0.53 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli ECRC101 0.44 MCAODC_22830 mfd transcription-repair coupling factor 0.53 MCAODC_27380 recR recombination mediator RecR — —
Escherichia coli BL21 0.44 ECD_01110 transcription-repair coupling factor 0.53 ECD_00423 gap repair protein low > 60
Enterobacter asburiae PDN3 0.43 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.53 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Shewanella amazonensis SB2B 0.43 Sama_1330 transcription-repair coupling factor (RefSeq) 0.53 Sama_1312 recR recombination protein RecR (RefSeq) 0.44 26
Pectobacterium carotovorum WPP14 0.43 HER17_RS08775 transcription-repair coupling factor 0.52 HER17_RS15695 recombination mediator RecR low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF3397 Transcription-repair coupling factor 0.53 GFF4390 Recombination protein RecR low > 78
Shewanella loihica PV-4 0.43 Shew_1630 transcription-repair coupling factor (RefSeq) 0.54 Shew_2233 recombination protein RecR (RefSeq) low > 60
Erwinia tracheiphila SCR3 0.43 LU632_RS14730 mfd transcription-repair coupling factor 0.55 LU632_RS18105 recR recombination mediator RecR low > 74
Enterobacter sp. TBS_079 0.43 MPMX20_01795 Transcription-repair-coupling factor 0.53 MPMX20_01074 Recombination protein RecR low > 85
Klebsiella michiganensis M5al 0.43 BWI76_RS11205 transcription-repair coupling factor 0.54 BWI76_RS06830 recombination protein RecR low > 92
Lysobacter sp. OAE881 0.43 ABIE51_RS14320 transcription-repair coupling factor 0.60 ABIE51_RS14010 recombination mediator RecR low > 62
Dickeya dadantii 3937 0.43 DDA3937_RS13000 transcription-repair coupling factor 0.54 DDA3937_RS05790 recombination protein RecR low > 74
Acinetobacter radioresistens SK82 0.43 MPMX26_01319 Transcription-repair-coupling factor 0.51 MPMX26_01643 Recombination protein RecR low > 36
Dickeya dianthicola 67-19 0.43 HGI48_RS13065 transcription-repair coupling factor 0.55 HGI48_RS05840 recombination protein RecR — —
Dickeya dianthicola ME23 0.43 DZA65_RS13530 transcription-repair coupling factor 0.55 DZA65_RS06165 recombination protein RecR low > 75
Rahnella sp. WP5 0.42 EX31_RS24520 transcription-repair coupling factor 0.53 EX31_RS22525 recombination protein RecR low > 89
Serratia liquefaciens MT49 0.42 IAI46_10320 transcription-repair coupling factor 0.53 IAI46_05240 recombination protein RecR low > 86
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1775.1 Transcription-repair coupling factor 0.54 Xcc-8004.4012.1 Recombination protein RecR low > 74
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01920 transcription-repair coupling factor Mfd 0.40 CCNA_00270 Recombination protein recR low > 67
Caulobacter crescentus NA1000 0.33 CCNA_01920 transcription-repair coupling factor Mfd 0.40 CCNA_00270 Recombination protein recR 0.63 4
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS04775 transcription-repair coupling factor 0.35 A4249_RS15115 recombination mediator RecR low > 48
Magnetospirillum magneticum AMB-1 0.31 AMB_RS12390 transcription-repair coupling factor 0.38 AMB_RS20755 recombination protein RecR low > 64
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0960 transcription-repair coupling factor (mfd) 0.41 Ga0059261_0645 DNA replication and repair protein RecR low > 68
Azospirillum sp. SherDot2 0.31 MPMX19_00876 Transcription-repair-coupling factor 0.42 MPMX19_02195 Recombination protein RecR low > 112
Rhodospirillum rubrum S1H 0.30 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.41 Rru_A3471 RecR protein (NCBI) — —
Rhodopseudomonas palustris CGA009 0.30 TX73_013805 transcription-repair coupling factor 0.44 TX73_003195 recombination mediator RecR — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.41 Dshi_0648 recombination protein RecR (RefSeq) low > 64
Bosea sp. OAE506 0.29 ABIE41_RS15825 transcription-repair coupling factor 0.40 ABIE41_RS04035 recombination mediator RecR — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c14920 transcription-repair-coupling factor Mfd 0.37 PGA1_c30290 recombination protein RecR low > 62
Agrobacterium fabrum C58 0.29 Atu1778 transcription-repair coupling factor 0.42 Atu0093 Recombination protein 0.39 32
Sinorhizobium meliloti 1021 0.29 SMc04450 transcription-repair coupling factor 0.40 SMc02908 recombination protein RecR low > 103
Rhizobium sp. OAE497 0.29 ABIE40_RS09310 transcription-repair coupling factor 0.39 ABIE40_RS00300 recombination mediator RecR low > 107
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1326 mfd transcription-repair coupling factor 0.40 Synpcc7942_1369 recR recombination protein RecR — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_1312 transcription-repair coupling factor (mfd) 0.41 Echvi_1987 recombination protein RecR 0.40 21
Bifidobacterium breve UCC2003 0.25 BBR_RS14115 transcription-repair coupling factor 0.41 BBR_RS10990 recombination protein RecR low > 34
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02110 transcription-repair coupling factor 0.37 HMPREF1078_RS07615 recombination mediator RecR low > 61
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_0285 transcription-repair coupling factor (RefSeq) 0.32 DvMF_2271 recombination protein RecR (RefSeq) low > 51
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS15450 transcription-repair coupling factor 0.38 HMPREF1058_RS18560 recombination protein RecR low > 67
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS11420 transcription-repair coupling factor 0.38 ABI39_RS14870 recombination protein RecR low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU1903 mfd transcription-repair coupling factor (TIGR) 0.34 DVU3200 recR recombination protein RecR (TIGR) low > 55
Mycobacterium tuberculosis H37Rv 0.24 Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) 0.40 Rv3715c Probable recombination protein RecR low > 58
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_15820 transcription-repair coupling factor 0.41 CA264_01105 recombination protein RecR 0.50 10
Bacteroides thetaiotaomicron VPI-5482 0.24 BT0252 transcription-repair coupling factor (NCBI ptt file) 0.39 BT1081 recombination protein recR (NCBI ptt file) low > 81

Not shown: 1 genomes with orthologs for Dsui_2385 only; 6 genomes with orthologs for Dsui_1811 only