Conservation of cofitness between CSW01_01115 and CSW01_13550 in Vibrio cholerae E7946 ATCC 55056

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01115 ribonuclease PH 1.0 CSW01_13550 O-succinylhomoserine (thiol)-lyase 0.47 2
Dickeya dianthicola ME23 0.78 DZA65_RS00730 ribonuclease PH 0.58 DZA65_RS21470 cystathionine gamma-synthase low > 75
Dickeya dianthicola 67-19 0.78 HGI48_RS00675 ribonuclease PH 0.58 HGI48_RS20425 cystathionine gamma-synthase low > 71
Dickeya dadantii 3937 0.77 DDA3937_RS20540 ribonuclease PH 0.59 DDA3937_RS00950 cystathionine gamma-synthase low > 74
Pectobacterium carotovorum WPP14 0.76 HER17_RS20855 ribonuclease PH 0.60 HER17_RS00910 cystathionine gamma-synthase low > 75
Erwinia amylovora T8 0.75 OLJFJH_05765 ribonuclease PH 0.54 OLJFJH_06095 cystathionine gamma-synthase low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.59 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) low > 78
Enterobacter sp. TBS_079 0.74 MPMX20_00092 Ribonuclease PH 0.59 MPMX20_04531 Cystathionine gamma-synthase low > 85
Enterobacter asburiae PDN3 0.74 EX28DRAFT_3893 ribonuclease PH 0.59 EX28DRAFT_4411 cystathionine gamma-synthase (EC 2.5.1.48) low > 76
Erwinia tracheiphila SCR3 0.73 LU632_RS22020 rph ribonuclease PH 0.57 LU632_RS19640 metB cystathionine gamma-synthase low > 74
Escherichia coli ECRC101 0.73 MCAODC_06100 rph ribonuclease PH 0.59 MCAODC_04175 metB cystathionine gamma-synthase low > 87
Escherichia coli ECRC100 0.73 OKFHMN_15590 rph ribonuclease PH 0.59 OKFHMN_13675 metB cystathionine gamma-synthase low > 80
Escherichia coli BL21 0.73 ECD_03500 ribonuclease PH 0.59 ECD_03825 cystathionine gamma-synthase, PLP-dependent low > 61
Klebsiella michiganensis M5al 0.73 BWI76_RS27390 ribonuclease PH 0.58 BWI76_RS00785 cystathionine gamma-synthase 0.64 26
Escherichia coli ECRC98 0.73 JDDGAC_19215 rph ribonuclease PH 0.59 JDDGAC_17300 metB cystathionine gamma-synthase low > 86
Escherichia coli ECOR38 0.73 HEPCGN_14410 rph ribonuclease PH 0.59 HEPCGN_12345 metB cystathionine gamma-synthase low > 87
Escherichia coli Nissle 1917 0.73 ECOLIN_RS20755 ribonuclease PH 0.59 ECOLIN_RS22725 cystathionine gamma-synthase low > 55
Escherichia coli ECRC99 0.73 KEDOAH_12555 rph ribonuclease PH 0.59 KEDOAH_14485 metB cystathionine gamma-synthase — —
Escherichia fergusonii Becca 0.73 EFB2_00170 Ribonuclease PH 0.59 EFB2_04679 Cystathionine gamma-synthase low > 86
Pantoea sp. MT58 0.73 IAI47_00595 ribonuclease PH 0.55 IAI47_00880 cystathionine gamma-synthase 0.48 68
Escherichia coli ECRC62 0.73 BNILDI_04045 rph ribonuclease PH 0.59 BNILDI_05715 metB cystathionine gamma-synthase low > 75
Serratia liquefaciens MT49 0.73 IAI46_24850 ribonuclease PH 0.59 IAI46_24540 cystathionine gamma-synthase low > 86
Escherichia coli ECOR27 0.73 NOLOHH_07470 rph ribonuclease PH 0.59 NOLOHH_05820 metB cystathionine gamma-synthase low > 75
Escherichia coli ECRC102 0.73 NIAGMN_13350 rph ribonuclease PH 0.59 NIAGMN_11430 metB cystathionine gamma-synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00059 Ribonuclease PH 0.59 OHPLBJKB_04111 Cystathionine gamma-synthase low > 73
Rahnella sp. WP5 0.72 EX31_RS14505 ribonuclease PH 0.56 EX31_RS14215 cystathionine gamma-synthase 0.70 42
Shewanella sp. ANA-3 0.71 Shewana3_3777 RNAse PH (RefSeq) 0.59 Shewana3_3614 cystathionine gamma-synthase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.71 MIT1002_04071 Ribonuclease PH 0.19 MIT1002_02266 Methionine gamma-lyase low > 70
Shewanella oneidensis MR-1 0.70 SO4256 rph ribonuclease PH (NCBI ptt file) 0.57 SO4056 metB cystathionine gamma-synthase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.70 Shew_3488 ribonuclease PH (RefSeq) 0.56 Shew_0520 O-succinylhomoserine (thiol)-lyase (RefSeq) low > 60
Escherichia coli BW25113 0.70 b3643 rph ribonuclease PH (NCBI) 0.59 b3939 metB cystathionine gamma-synthase (NCBI) low > 76
Shewanella amazonensis SB2B 0.69 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.59 Sama_3171 cystathionine gamma-synthase (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF3254 Ribonuclease PH (EC 2.7.7.56) 0.29 GFF301 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) low > 90
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0588 ribonuclease PH 0.58 B158DRAFT_2459 cystathionine gamma-synthase (EC 2.5.1.48) low > 40
Pseudomonas aeruginosa PA14 0.65 IKLFDK_26785 ribonuclease PH 0.37 IKLFDK_23420 cystathionine gamma-synthase low > 101
Pseudomonas sp. S08-1 0.64 OH686_13570 ribonuclease PH 0.31 OH686_04415 O-succinylhomoserine sulfhydrylase low > 80
Pseudomonas sp. SVBP6 0.64 COO64_RS01510 rph ribonuclease PH 0.37 COO64_RS14890 cystathionine gamma-synthase low > 93
Pseudomonas sp. BP01 0.64 JOY50_RS09025 rph ribonuclease PH 0.34 JOY50_RS01570 PLP-dependent aspartate aminotransferase family protein low > 84
Dechlorosoma suillum PS 0.64 Dsui_0494 ribonuclease PH 0.35 Dsui_2042 cystathionine beta-lyase/cystathionine gamma-synthase low > 51
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_0213 RNAse PH 0.30 Psyr_1669 O-succinylhomoserine sulfhydrylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_0213 RNAse PH 0.30 Psyr_1669 O-succinylhomoserine sulfhydrylase low > 86
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.38 Pf1N1B4_4890 Cystathionine gamma-lyase (EC 4.4.1.1) low > 87
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.30 Pf6N2E2_77 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) low > 103
Acinetobacter radioresistens SK82 0.64 MPMX26_00040 Ribonuclease PH 0.32 MPMX26_01645 O-succinylhomoserine sulfhydrylase low > 36
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_09260 ribonuclease PH 0.38 AO353_23295 cystathionine beta-lyase low > 101
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_12500 ribonuclease PH 0.30 AO356_21470 O-succinylhomoserine sulfhydrylase low > 104
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.30 PfGW456L13_3934 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) low > 87
Marinobacter adhaerens HP15 0.64 HP15_300 ribonuclease PH 0.27 HP15_1820 methionine gamma-lyase low > 73
Pseudomonas putida KT2440 0.64 PP_5294 Ribonuclease PH 0.34 PP_4594 putative Cystathionine gamma-synthase low > 96
Pseudomonas sp. RS175 0.63 PFR28_04420 Ribonuclease PH 0.30 PFR28_02810 O-succinylhomoserine sulfhydrylase low > 88
Pseudomonas stutzeri RCH2 0.63 Psest_3813 ribonuclease PH 0.32 Psest_2578 O-succinylhomoserine sulfhydrylase low > 67
Variovorax sp. SCN45 0.63 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.28 GFF3088 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Pseudomonas fluorescens SBW25 0.63 PFLU_RS29490 ribonuclease PH 0.36 PFLU_RS16625 cystathionine gamma-synthase low > 109
Pseudomonas sp. DMC3 0.63 GFF415 Ribonuclease PH 0.38 GFF3060 Cystathionine beta-lyase low > 89
Pseudomonas simiae WCS417 0.63 PS417_27810 ribonuclease PH 0.32 PS417_11735 methionine gamma-lyase low > 88
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS29490 ribonuclease PH 0.36 PFLU_RS16625 cystathionine gamma-synthase low > 109
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS11900 ribonuclease PH 0.54 ABZR86_RS19030 cystathionine gamma-synthase low > 74
Variovorax sp. OAS795 0.63 ABID97_RS23640 ribonuclease PH 0.27 ABID97_RS21630 O-succinylhomoserine sulfhydrylase — —
Methylophilus sp. DMC18 0.62 GFF2136 Ribonuclease PH 0.28 GFF412 O-acetyl-L-homoserine sulfhydrylase low > 43
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) 0.53 Xcc-8004.1596.1 hypothetical protein low > 74
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS03645 ribonuclease PH 0.25 QEN71_RS17685 O-succinylhomoserine sulfhydrylase low > 153
Azospirillum brasilense Sp245 0.61 AZOBR_RS02205 ribonuclease PH 0.27 AZOBR_RS11340 O-acetylhomoserine aminocarboxypropyltransferase low > 97
Bosea sp. OAE506 0.61 ABIE41_RS03295 ribonuclease PH 0.27 ABIE41_RS19270 O-acetylhomoserine aminocarboxypropyltransferase low > 77
Acidovorax sp. GW101-3H11 0.60 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.31 Ac3H11_34 Methionine gamma-lyase (EC 4.4.1.11) low > 79
Rhodopseudomonas palustris CGA009 0.60 TX73_001710 ribonuclease PH 0.30 TX73_012185 PLP-dependent aspartate aminotransferase family protein low > 86
Paraburkholderia graminis OAS925 0.60 ABIE53_003234 ribonuclease PH 0.26 ABIE53_004817 O-succinylhomoserine sulfhydrylase low > 113
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS15325 ribonuclease PH 0.26 BPHYT_RS33835 O-succinylhomoserine sulfhydrylase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04008 RNAse PH 0.26 H281DRAFT_06059 O-succinylhomoserine sulfhydrylase low > 103
Sinorhizobium meliloti 1021 0.60 SMc01144 ribonuclease PH 0.47 SMc02595 cystathionine gamma-synthase low > 103
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_12150 rph ribonuclease PH 0.55 OKGIIK_01515 metB cystathionine gamma-synthase — —
Rhodanobacter denitrificans MT42 0.59 LRK55_RS11470 ribonuclease PH 0.56 LRK55_RS05085 cystathionine gamma-synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS11745 ribonuclease PH 0.55 LRK54_RS05305 cystathionine gamma-synthase low > 59
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS16795 ribonuclease PH 0.54 LRK53_RS04700 cystathionine gamma-synthase — —
Lysobacter sp. OAE881 0.59 ABIE51_RS17285 ribonuclease PH 0.52 ABIE51_RS16185 O-succinylhomoserine (thiol)-lyase low > 62
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04890 ribonuclease PH 0.26 RR42_RS06465 O-acetylhomoserine aminocarboxypropyltransferase low > 128
Azospirillum sp. SherDot2 0.59 MPMX19_02576 Ribonuclease PH 0.32 MPMX19_06514 L-methionine gamma-lyase low > 112
Agrobacterium fabrum C58 0.59 Atu0327 ribonuclease PH 0.27 Atu0432 O-succinylhomoserine sulfhydrylase — —
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS10655 ribonuclease PH 0.22 HSERO_RS18310 O-acetylhomoserine aminocarboxypropyltransferase low > 78
Rhizobium sp. OAE497 0.59 ABIE40_RS01640 ribonuclease PH 0.27 ABIE40_RS02340 O-succinylhomoserine sulfhydrylase low > 107
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS15255 ribonuclease PH 0.27 ABZR87_RS17575 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 80
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13840 ribonuclease PH 0.25 RPSI07_RS15620 O-acetylhomoserine aminocarboxypropyltransferase — —
Ralstonia solanacearum GMI1000 0.58 RS_RS10830 ribonuclease PH 0.25 RS_RS07865 O-acetylhomoserine aminocarboxypropyltransferase — —
Rhodospirillum rubrum S1H 0.57 Rru_A3641 Ribonuclease PH (NCBI) 0.35 Rru_A0786 Cystathionine gamma-synthase (NCBI) low > 58
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS03345 ribonuclease PH 0.25 RALBFv3_RS01870 O-acetylhomoserine aminocarboxypropyltransferase low > 76
Ralstonia solanacearum UW163 0.57 UW163_RS10375 ribonuclease PH 0.25 UW163_RS15180 O-acetylhomoserine aminocarboxypropyltransferase — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03515 ribonuclease PH 0.30 ABCV34_RS15785 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 48
Xanthobacter sp. DMC5 0.57 GFF1893 Ribonuclease PH 0.25 GFF697 O-acetyl-L-homoserine sulfhydrylase — —
Magnetospirillum magneticum AMB-1 0.55 AMB_RS22760 ribonuclease PH 0.27 AMB_RS21365 O-succinylhomoserine sulfhydrylase — —
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00151 ribonuclease PH 0.31 CCNA_03271 methionine gamma-lyase 0.54 64
Caulobacter crescentus NA1000 0.54 CCNA_00151 ribonuclease PH 0.31 CCNA_03271 methionine gamma-lyase low > 66
Dinoroseobacter shibae DFL-12 0.54 Dshi_3463 ribonuclease PH (RefSeq) 0.26 Dshi_1002 Cystathionine gamma-synthase (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS13125 ribonuclease PH 0.54 A4249_RS16160 cystathionine gamma-synthase low > 48
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_1073 rph ribonuclease PH 0.21 Synpcc7942_0370 metY O-acetylhomoserine/O-acetylserine sulfhydrylase low > 38
Mycobacterium tuberculosis H37Rv 0.52 Rv1340 Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase) 0.37 Rv1079 Cystathionine gamma-synthase MetB (CGS) (O-succinylhomoserine [thiol]-lyase) — —
Bifidobacterium breve UCC2003 0.52 BBR_RS12405 ribonuclease PH 0.35 BBR_RS13145 cystathionine gamma-synthase low > 34
Phaeobacter inhibens DSM 17395 0.52 PGA1_c35030 ribonuclease PH 0.32 PGA1_c16600 methionine gamma-lyase MdeA low > 62
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_2741 ribonuclease PH 0.26 Ga0059261_3194 O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data) — —

Not shown: 0 genomes with orthologs for CSW01_01115 only; 12 genomes with orthologs for CSW01_13550 only