| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09245 | | Holliday junction branch migration protein RuvA | 1.0 | CSW01_05630 | | replication-associated recombination protein A | 0.84 | 4 |
| Escherichia coli BW25113 | 0.67 | b1861 | ruvA | Holliday junction DNA helicase motor protein (NCBI) | 0.73 | b0892 | ycaJ | recombination protein (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.67 | ECOLIN_RS10365 | | Holliday junction branch migration protein RuvA | 0.73 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.67 | OHPLBJKB_01867 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.73 | OHPLBJKB_02776 | | Replication-associated recombination protein A | — | — |
| Escherichia fergusonii Becca | 0.67 | EFB2_02081 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.73 | EFB2_03169 | | Replication-associated recombination protein A | — | — |
| Escherichia coli ECRC62 | 0.67 | BNILDI_15515 | ruvA | Holliday junction branch migration protein RuvA | 0.72 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli BL21 | 0.67 | ECD_01832 | | component of RuvABC resolvasome, regulatory subunit | 0.73 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | — | — |
| Enterobacter sp. TBS_079 | 0.66 | MPMX20_02767 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.72 | MPMX20_01554 | | Replication-associated recombination protein A | low | > 85 |
| Escherichia coli ECOR27 | 0.66 | NOLOHH_16725 | ruvA | Holliday junction branch migration protein RuvA | 0.72 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECOR38 | 0.66 | HEPCGN_04690 | ruvA | Holliday junction branch migration protein RuvA | 0.73 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECRC101 | 0.66 | MCAODC_19125 | ruvA | Holliday junction branch migration protein RuvA | 0.73 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECRC102 | 0.66 | NIAGMN_01780 | ruvA | Holliday junction branch migration protein RuvA | 0.73 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECRC99 | 0.66 | KEDOAH_01825 | ruvA | Holliday junction branch migration protein RuvA | 0.73 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECRC98 | 0.66 | JDDGAC_00855 | ruvA | Holliday junction branch migration protein RuvA | 0.73 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECRC101 | 0.66 | OKFHMN_26280 | ruvA | Holliday junction branch migration protein RuvA | 0.73 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | — | — |
| Rahnella sp. WP5 | 0.66 | EX31_RS11675 | | Holliday junction branch migration protein RuvA | 0.71 | EX31_RS18515 | | replication-associated recombination protein A | low | > 89 |
| Enterobacter asburiae PDN3 | 0.66 | EX28DRAFT_0695 | | Holliday junction DNA helicase subunit RuvA | 0.72 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF1640 | | Holliday junction DNA helicase RuvA | 0.73 | GFF4896 | | FIG065221: Holliday junction DNA helicase | — | — |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS18150 | | Holliday junction branch migration protein RuvA | 0.73 | BWI76_RS09670 | | recombination factor protein RarA | — | — |
| Shewanella loihica PV-4 | 0.64 | Shew_2076 | | Holliday junction DNA helicase RuvA (RefSeq) | 0.64 | Shew_2022 | | recombination factor protein RarA (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.63 | MIT1002_01332 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.59 | MIT1002_02178 | | Replication-associated recombination protein A | — | — |
| Pantoea sp. MT58 | 0.63 | IAI47_08445 | | Holliday junction branch migration protein RuvA | 0.73 | IAI47_12900 | | replication-associated recombination protein A | low | > 76 |
| Shewanella oneidensis MR-1 | 0.63 | SO2430 | ruvA | Holliday junction DNA helicase RuvA (NCBI ptt file) | 0.63 | SO2308 | | ATPase, AAA family (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.62 | Shewana3_1956 | ruvA | Holliday junction DNA helicase RuvA (RefSeq) | 0.63 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | low | > 73 |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS10080 | | Holliday junction branch migration protein RuvA | 0.73 | DDA3937_RS09605 | | replication-associated recombination protein A | — | — |
| Dickeya dianthicola 67-19 | 0.61 | HGI48_RS10110 | | Holliday junction branch migration protein RuvA | 0.73 | HGI48_RS09620 | | replication-associated recombination protein A | — | — |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS11845 | | Holliday junction branch migration protein RuvA | 0.72 | HER17_RS12345 | | replication-associated recombination protein A | — | — |
| Dickeya dianthicola ME23 | 0.61 | DZA65_RS10525 | | Holliday junction branch migration protein RuvA | 0.73 | DZA65_RS09930 | | replication-associated recombination protein A | — | — |
| Shewanella amazonensis SB2B | 0.60 | Sama_1840 | ruvA | Holliday junction DNA helicase RuvA (RefSeq) | 0.61 | Sama_1774 | | recombination factor protein RarA (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS13415 | ruvA | Holliday junction branch migration protein RuvA | 0.69 | LU632_RS09755 | | replication-associated recombination protein A | — | — |
| Serratia liquefaciens MT49 | 0.60 | IAI46_14625 | | Holliday junction branch migration protein RuvA | 0.70 | IAI46_08570 | | replication-associated recombination protein A | — | — |
| Pseudomonas putida KT2440 | 0.57 | PP_1216 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.57 | PP_4002 | | DNA-dependent ATPase required for recombination | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.56 | Psest_1496 | | Holliday junction DNA helicase, RuvA subunit | 0.55 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 67 |
| Pseudomonas syringae pv. syringae B728a | 0.55 | Psyr_1409 | | Holliday junction DNA helicase subunit RuvA | 0.57 | Psyr_3177 | | Recombination protein MgsA | — | — |
| Pseudomonas sp. S08-1 | 0.55 | OH686_19130 | | Holliday junction DNA helicase RuvA | 0.56 | OH686_00270 | | Replication-associated recombination protein RarA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.55 | Psyr_1409 | | Holliday junction DNA helicase subunit RuvA | 0.57 | Psyr_3177 | | Recombination protein MgsA | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_18020 | | ATP-dependent DNA helicase RuvA | 0.57 | AO356_22185 | | recombination factor protein RarA | low | > 104 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_03413 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.56 | PFR28_02606 | | Replication-associated recombination protein A | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_638 | | Holliday junction DNA helicase RuvA | 0.56 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_03585 | | ATP-dependent DNA helicase RuvA | 0.55 | AO353_27640 | | recombination factor protein RarA | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_5536 | | Holliday junction DNA helicase RuvA | 0.56 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_1852 | | Holliday junction DNA helicase RuvA | 0.55 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | low | > 87 |
| Kangiella aquimarina DSM 16071 | 0.53 | B158DRAFT_1125 | | Holliday junction DNA helicase subunit RuvA | 0.55 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 40 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_2041 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.57 | HP15_1817 | | recombination factor protein RarA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS24090 | | Holliday junction branch migration protein RuvA | 0.55 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS24090 | | Holliday junction branch migration protein RuvA | 0.55 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_22450 | | ATP-dependent DNA helicase RuvA | 0.55 | PS417_16480 | | recombination factor protein RarA | low | > 88 |
| Rhodanobacter denitrificans FW104-10B01 | 0.48 | LRK54_RS04910 | | Holliday junction branch migration protein RuvA | 0.49 | LRK54_RS17320 | | replication-associated recombination protein A | — | — |
| Rhodanobacter denitrificans MT42 | 0.48 | LRK55_RS04690 | | Holliday junction branch migration protein RuvA | 0.48 | LRK55_RS17545 | | replication-associated recombination protein A | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS10840 | | Holliday junction branch migration protein RuvA | 0.48 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.53 | 24 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_01840 | ruvA | Holliday junction branch migration protein RuvA | 0.49 | OKGIIK_07580 | rarA | recombination factor protein RarA | — | — |
| Lysobacter sp. OAE881 | 0.44 | ABIE51_RS05045 | | Holliday junction branch migration protein RuvA | 0.45 | ABIE51_RS11445 | | replication-associated recombination protein A | low | > 62 |
| Dechlorosoma suillum PS | 0.43 | Dsui_0485 | | Holliday junction DNA helicase, RuvA subunit | 0.48 | Dsui_1694 | | AAA ATPase | — | — |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_02185 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.36 | MPMX26_02987 | | Replication-associated recombination protein A | low | > 36 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1436.1 | | Holliday junction DNA helicase RuvA | 0.48 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.28 | 34 |
| Variovorax sp. SCN45 | 0.41 | GFF2073 | | Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) | 0.47 | GFF6034 | | Replication-associated recombination protein RarA | low | > 127 |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS16615 | | holliday junction ATP-dependent DNA helicase RuvA | 0.49 | BPHYT_RS05100 | | ATPase AAA | — | — |
| Castellaniella sp019104865 MT123 | 0.41 | ABCV34_RS07980 | | Holliday junction branch migration protein RuvA | 0.47 | ABCV34_RS07220 | | replication-associated recombination protein A | low | > 48 |
| Variovorax sp. OAS795 | 0.39 | ABID97_RS24920 | | Holliday junction branch migration protein RuvA | 0.48 | ABID97_RS07835 | | replication-associated recombination protein A | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF1666 | | Holliday junction DNA helicase RuvA | 0.38 | GFF777 | | FIG065221: Holliday junction DNA helicase | low | > 90 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_003494 | | Holliday junction DNA helicase RuvA | 0.49 | ABIE53_001292 | | putative ATPase | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS02490 | | Holliday junction branch migration protein RuvA | 0.48 | RS_RS11735 | | replication-associated recombination protein A | — | — |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS07625 | | Holliday junction branch migration protein RuvA | 0.50 | ABZR87_RS16030 | | replication-associated recombination protein A | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS11670 | | Holliday junction branch migration protein RuvA | 0.49 | RALBFv3_RS04145 | | replication-associated recombination protein A | — | — |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS01915 | | Holliday junction branch migration protein RuvA | 0.49 | UW163_RS09525 | | replication-associated recombination protein A | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.38 | H281DRAFT_04254 | | Holliday junction DNA helicase subunit RuvA | 0.48 | H281DRAFT_00180 | | Recombination protein MgsA | — | — |
| Ralstonia solanacearum PSI07 | 0.37 | RPSI07_RS21550 | | Holliday junction branch migration protein RuvA | 0.49 | RPSI07_RS13205 | | replication-associated recombination protein A | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.37 | QEN71_RS26795 | | Holliday junction branch migration protein RuvA | 0.50 | QEN71_RS03415 | | replication-associated recombination protein A | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS02705 | | Holliday junction DNA helicase RuvA | 0.49 | RR42_RS04355 | | recombination factor protein RarA | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS02090 | | Holliday junction DNA helicase RuvA | 0.47 | HSERO_RS09515 | | ATPase AAA | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_4683 | | Holliday junction DNA helicase RuvA | 0.47 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.31 | CA264_14545 | | Holliday junction branch migration protein RuvA | 0.39 | CA264_02215 | | AAA family ATPase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.30 | CA265_RS18995 | | Holliday junction branch migration protein RuvA | 0.38 | CA265_RS22400 | | AAA family ATPase | low | > 88 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.30 | Echvi_4082 | | Holliday junction DNA helicase, RuvA subunit | 0.37 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 79 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.27 | ABZR88_RS18310 | | Holliday junction branch migration protein RuvA | 0.38 | ABZR88_RS20285 | | replication-associated recombination protein A | — | — |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS13015 | | Holliday junction branch migration protein RuvA | 0.39 | HMPREF1078_RS15395 | | replication-associated recombination protein A | low | > 61 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.25 | A4249_RS15860 | | Holliday junction branch migration protein RuvA | 0.41 | A4249_RS07890 | | replication-associated recombination protein A | — | — |
| Rhodopseudomonas palustris CGA009 | 0.25 | TX73_005655 | | Holliday junction branch migration protein RuvA | 0.40 | TX73_016655 | | replication-associated recombination protein A | — | — |
| Bifidobacterium breve UCC2003 | 0.24 | BBR_RS15655 | | Holliday junction branch migration protein RuvA | 0.36 | BBR_RS17330 | | replication-associated recombination protein A | low | > 34 |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A1088 | | DNA recombination protein RuvA (NCBI) | 0.39 | Rru_A2660 | | AAA ATPase, central region (NCBI) | — | — |
| Bacteroides stercoris CC31F | 0.23 | HMPREF1181_RS07915 | | Holliday junction branch migration protein RuvA | 0.38 | HMPREF1181_RS16975 | | replication-associated recombination protein A | low | > 56 |
| Magnetospirillum magneticum AMB-1 | 0.23 | AMB_RS16255 | | Holliday junction branch migration protein RuvA | 0.39 | AMB_RS17620 | | replication-associated recombination protein A | — | — |
| Bosea sp. OAE506 | 0.23 | ABIE41_RS09475 | | Holliday junction branch migration protein RuvA | 0.38 | ABIE41_RS14690 | | replication-associated recombination protein A | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.23 | BT1978 | | Holliday junction DNA helicase ruvA (NCBI ptt file) | 0.38 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | — | — |
| Mycobacterium tuberculosis H37Rv | 0.23 | Rv2593c | | Probable holliday junction DNA helicase RuvA | 0.34 | Rv2559c | | Conserved hypothetical alanine leucine valine rich protein | — | — |
| Bacteroides ovatus ATCC 8483 | 0.23 | BACOVA_00691 | | Holliday junction DNA helicase RuvA | 0.39 | BACOVA_03971 | | ATPase, AAA family | — | — |
| Fusobacterium nucleatum SB010 | 0.23 | HUW76_06655 | | Holliday junction branch migration protein RuvA | 0.30 | HUW76_02735 | | replication-associated recombination protein A | low | > 35 |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS15745 | | Holliday junction branch migration protein RuvA | 0.41 | ABIE40_RS08045 | | replication-associated recombination protein A | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.22 | SMc03966 | | Holliday junction DNA helicase RuvA | 0.41 | SMc01279 | | recombination factor protein RarA | — | — |
| Phocaeicola dorei CL03T12C01 | 0.22 | ABI39_RS08200 | | Holliday junction branch migration protein RuvA | 0.39 | ABI39_RS20200 | | replication-associated recombination protein A | — | — |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c05860 | | holliday junction ATP-dependent DNA helicase RuvA | 0.39 | PGA1_c01930 | | replication-associated recombination protein A | low | > 62 |
| Agrobacterium fabrum C58 | 0.22 | Atu3723 | | Holliday junction DNA helicase RuvA | 0.41 | Atu1914 | | ATPase, AAA family protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_1104 | | Holliday junction DNA helicase RuvA (RefSeq) | 0.40 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS00595 | | Holliday junction branch migration protein RuvA | 0.39 | HMPREF1058_RS06440 | | replication-associated recombination protein A | low | > 67 |
| Desulfovibrio vulgaris Miyazaki F | 0.21 | DvMF_3204 | | Holliday junction DNA helicase RuvA (RefSeq) | 0.30 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | low | > 51 |
| Caulobacter crescentus NA1000 | 0.21 | CCNA_03345 | | Holliday junction DNA helicase RuvA | 0.39 | CCNA_01342 | | ATPase, AAA family | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.21 | CCNA_03345 | | Holliday junction DNA helicase RuvA | 0.39 | CCNA_01342 | | ATPase, AAA family | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS09045 | | Holliday junction DNA helicase RuvA | 0.40 | AZOBR_RS06885 | | ATPase AAA | — | — |
| Azospirillum sp. SherDot2 | 0.19 | MPMX19_00697 | | Holliday junction ATP-dependent DNA helicase RuvA | 0.41 | MPMX19_01528 | | Replication-associated recombination protein A | — | — |
Not shown: 2 genomes with orthologs for CSW01_09245 only; 1 genomes with orthologs for CSW01_05630 only