Conservation of cofitness between CSW01_09620 and CSW01_03975 in Vibrio cholerae E7946 ATCC 55056

106 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09620 trigger factor 1.0 CSW01_03975 exodeoxyribonuclease VII large subunit 0.63 13
Klebsiella pneumoniae MKP103 0.72 KDGMDA_14600 trigger factor 0.55 KDGMDA_28165 exodeoxyribonuclease VII large subunit low > 95
Escherichia coli Nissle 1917 0.71 ECOLIN_RS02620 trigger factor 0.53 ECOLIN_RS14245 exodeoxyribonuclease VII large subunit low > 55
Rahnella sp. WP5 0.71 EX31_RS22240 trigger factor 0.55 EX31_RS20455 exodeoxyribonuclease VII large subunit low > 89
Serratia liquefaciens MT49 0.71 IAI46_05005 trigger factor 0.55 IAI46_19215 exodeoxyribonuclease VII large subunit low > 87
Escherichia coli ECOR38 0.71 HEPCGN_06955 tig trigger factor 0.54 HEPCGN_20895 xseA exodeoxyribonuclease VII large subunit low > 88
Escherichia coli ECRC101 0.71 MCAODC_27565 tig trigger factor 0.52 MCAODC_12285 xseA exodeoxyribonuclease VII large subunit low > 87
Escherichia coli ECRC102 0.71 NIAGMN_06395 tig trigger factor 0.52 NIAGMN_19525 xseA exodeoxyribonuclease VII large subunit low > 80
Escherichia coli BL21 0.71 ECD_00387 peptidyl-prolyl cis/trans isomerase (trigger factor) 0.54 ECD_02401 exonuclease VII, large subunit low > 61
Escherichia coli ECRC99 0.71 KEDOAH_19625 tig trigger factor 0.52 KEDOAH_06465 xseA exodeoxyribonuclease VII large subunit — —
Escherichia coli ECOR27 0.71 NOLOHH_01275 tig trigger factor 0.54 NOLOHH_13405 xseA exodeoxyribonuclease VII large subunit low > 76
Escherichia coli ECRC98 0.71 JDDGAC_11995 tig trigger factor 0.52 JDDGAC_25430 xseA exodeoxyribonuclease VII large subunit low > 87
Escherichia coli BW25113 0.71 b0436 tig trigger factor (NCBI) 0.54 b2509 xseA exodeoxyribonuclease VII large subunit (NCBI) low > 76
Escherichia coli ECRC100 0.71 OKFHMN_08340 tig trigger factor 0.52 OKFHMN_21755 xseA exodeoxyribonuclease VII large subunit low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03237 Trigger factor 0.54 OHPLBJKB_01200 Exodeoxyribonuclease 7 large subunit low > 74
Escherichia coli ECRC62 0.71 BNILDI_22690 tig trigger factor 0.54 BNILDI_12205 xseA exodeoxyribonuclease VII large subunit low > 75
Escherichia fergusonii Becca 0.71 EFB2_03621 Trigger factor 0.53 EFB2_01384 Exodeoxyribonuclease 7 large subunit low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF4352 Cell division trigger factor (EC 5.2.1.8) 0.55 GFF2159 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2535 trigger factor 0.55 EX28DRAFT_0138 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) 0.69 27
Enterobacter sp. TBS_079 0.71 MPMX20_01027 Trigger factor 0.55 MPMX20_03383 Exodeoxyribonuclease 7 large subunit low > 85
Klebsiella michiganensis M5al 0.70 BWI76_RS06520 trigger factor 0.56 BWI76_RS21035 exodeoxyribonuclease VII large subunit low > 92
Erwinia amylovora T8 0.70 OLJFJH_17985 trigger factor 0.54 OLJFJH_10495 exodeoxyribonuclease VII large subunit low > 58
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_16435 tig trigger factor 0.54 IJEDHG_02730 xseA exodeoxyribonuclease VII large subunit low > 61
Erwinia tracheiphila SCR3 0.69 LU632_RS18350 tig trigger factor 0.54 LU632_RS17760 xseA exodeoxyribonuclease VII large subunit low > 73
Dickeya dadantii 3937 0.69 DDA3937_RS05635 trigger factor 0.55 DDA3937_RS15425 exodeoxyribonuclease VII large subunit low > 74
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS10535 trigger factor 0.54 PagCFBP13505_RS14990 exodeoxyribonuclease VII large subunit low > 74
Pantoea sp. MT58 0.69 IAI47_14660 trigger factor 0.54 IAI47_05100 exodeoxyribonuclease VII large subunit low > 76
Dickeya dianthicola 67-19 0.68 HGI48_RS05680 trigger factor 0.55 HGI48_RS15540 exodeoxyribonuclease VII large subunit low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS06005 trigger factor 0.55 DZA65_RS16615 exodeoxyribonuclease VII large subunit low > 75
Pectobacterium carotovorum WPP14 0.67 HER17_RS15855 trigger factor 0.54 HER17_RS06150 exodeoxyribonuclease VII large subunit low > 75
Shewanella loihica PV-4 0.65 Shew_2509 tig trigger factor (RefSeq) 0.52 Shew_1296 xseA exodeoxyribonuclease VII large subunit (RefSeq) low > 60
Shewanella sp. ANA-3 0.65 Shewana3_2662 tig trigger factor (RefSeq) 0.52 Shewana3_1234 xseA exodeoxyribonuclease VII large subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO1793 tig trigger factor (NCBI ptt file) 0.52 SO3294 xseA exodeoxyribonuclease VII, large subunit (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.64 Sama_1223 tig trigger factor (RefSeq) 0.52 Sama_2360 xseA exodeoxyribonuclease VII large subunit (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.59 MIT1002_02761 Trigger factor 0.47 MIT1002_02780 Exodeoxyribonuclease 7 large subunit low > 70
Pseudomonas sp. S08-1 0.54 OH686_03650 trigger factor 0.40 OH686_17580 exodeoxyribonuclease VII, large subunit low > 80
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_2219 Cell division trigger factor (EC 5.2.1.8) 0.39 Pf6N2E2_3168 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 103
Pseudomonas stutzeri RCH2 0.53 Psest_2288 trigger factor 0.41 Psest_1284 exodeoxyribonuclease VII, large subunit low > 67
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_01755 trigger factor 0.40 AO356_06540 exodeoxyribonuclease low > 104
Pseudomonas segetis P6 0.53 ACVTMO_RS11235 tig trigger factor 0.39 ACVTMO_RS07600 xseA exodeoxyribonuclease VII large subunit low > 75
Pseudomonas sp. BP01 0.52 JOY50_RS25920 tig trigger factor 0.39 JOY50_RS11480 xseA exodeoxyribonuclease VII large subunit low > 84
Pseudomonas sp. RS175 0.52 PFR28_01227 Trigger factor 0.40 PFR28_00307 Exodeoxyribonuclease 7 large subunit low > 88
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_20170 trigger factor 0.39 AO353_15935 exodeoxyribonuclease 0.30 68
Pseudomonas orientalis W4I3 0.52 QF045_RS18905 trigger factor 0.40 QF045_RS25320 exodeoxyribonuclease VII large subunit low > 93
Pseudomonas simiae WCS417 0.52 PS417_17240 trigger factor 0.40 PS417_23095 exodeoxyribonuclease low > 88
Pseudomonas sp. DMC3 0.52 GFF1442 Trigger factor 0.39 GFF4330 Exodeoxyribonuclease 7 large subunit low > 89
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3944 Cell division trigger factor (EC 5.2.1.8) 0.39 Pf1N1B4_844 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) — —
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS20725 tig;go_component=nascent trigger factor 0.39 DY961_RS14040 xseA;go_component=exodeoxyribonuclease exodeoxyribonuclease VII large subunit low > 100
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_2551 Cell division trigger factor (EC 5.2.1.8) 0.39 PfGW456L13_4851 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 87
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS54805 tig;go_component=nascent trigger factor 0.39 DQ20_RS43060 xseA;go_component=exodeoxyribonuclease exodeoxyribonuclease VII large subunit low > 101
Pseudomonas aeruginosa PA14 0.52 IKLFDK_08745 trigger factor 0.38 IKLFDK_19450 exodeoxyribonuclease VII large subunit low > 98
Pseudomonas fluorescens SBW25 0.52 PFLU_RS19175 trigger factor 0.40 PFLU_RS24755 exodeoxyribonuclease VII large subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS19175 trigger factor 0.40 PFLU_RS24755 exodeoxyribonuclease VII large subunit low > 109
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_1746 Trigger factor 0.39 Psyr_1259 Exodeoxyribonuclease VII large subunit low > 86
Pseudomonas putida KT2440 0.52 PP_2299 Trigger factor 0.39 PP_1027 Exodeoxyribonuclease 7 large subunit low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_1746 Trigger factor 0.39 Psyr_1259 Exodeoxyribonuclease VII large subunit low > 86
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_03744 Trigger factor 0.41 GEMAOFIL_04772 Exodeoxyribonuclease 7 large subunit low > 96
Pseudomonas sp. SVBP6 0.51 COO64_RS19190 tig trigger factor 0.39 COO64_RS04640 xseA exodeoxyribonuclease VII large subunit low > 93
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_1033 trigger factor 0.42 B158DRAFT_1157 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 40
Marinobacter adhaerens HP15 0.49 HP15_2186 trigger factor 0.45 HP15_2052 exodeoxyribonuclease VII large subunit low > 73
Acinetobacter radioresistens SK82 0.45 MPMX26_00407 Trigger factor 0.09 MPMX26_01581 Exodeoxyribonuclease 7 large subunit — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS12920 trigger factor 0.35 HSERO_RS05850 exodeoxyribonuclease VII large subunit low > 78
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS21990 trigger factor 0.36 QEN71_RS02835 exodeoxyribonuclease VII large subunit low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4040 Cell division trigger factor (EC 5.2.1.8) 0.33 GFF4511 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 90
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS09015 trigger factor 0.33 RR42_RS03475 exodeoxyribonuclease VII large subunit low > 128
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS12800 trigger factor 0.33 ABZR87_RS00710 exodeoxyribonuclease VII large subunit low > 80
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS01355 trigger factor 0.32 RALBFv3_RS05060 exodeoxyribonuclease VII large subunit — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS09445 trigger factor 0.36 BPHYT_RS15865 exodeoxyribonuclease VII large subunit low > 109
Ralstonia solanacearum UW163 0.37 UW163_RS14665 trigger factor 0.32 UW163_RS08565 exodeoxyribonuclease VII large subunit — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00895 trigger factor 0.36 H281DRAFT_04109 Exodeoxyribonuclease VII large subunit low > 103
Acidovorax sp. GW101-3H11 0.37 Ac3H11_934 Cell division trigger factor (EC 5.2.1.8) 0.31 Ac3H11_2382 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 79
Ralstonia solanacearum GMI1000 0.37 RS_RS08640 trigger factor 0.32 RS_RS12670 exodeoxyribonuclease VII large subunit low > 80
Ralstonia solanacearum PSI07 0.37 RPSI07_RS16120 trigger factor 0.32 RPSI07_RS12235 exodeoxyribonuclease VII large subunit low > 81
Castellaniella sp019104865 MT123 0.37 ABCV34_RS05140 trigger factor 0.35 ABCV34_RS05330 exodeoxyribonuclease VII large subunit — —
Variovorax sp. SCN45 0.36 GFF490 Cell division trigger factor (EC 5.2.1.8) 0.31 GFF349 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 127
Paraburkholderia graminis OAS925 0.36 ABIE53_002114 trigger factor 0.37 ABIE53_003344 exodeoxyribonuclease VII large subunit low > 113
Dechlorosoma suillum PS 0.36 Dsui_2195 trigger factor 0.37 Dsui_3268 exodeoxyribonuclease VII, large subunit low > 51
Variovorax sp. OAS795 0.35 ABID97_RS17605 trigger factor 0.31 ABID97_RS16945 exodeoxyribonuclease VII large subunit low > 91
Methylophilus sp. DMC18 0.33 GFF1302 Trigger factor 0.34 GFF902 Exodeoxyribonuclease 7 large subunit low > 43
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS07335 trigger factor 0.41 ABZR86_RS06815 exodeoxyribonuclease VII large subunit low > 74
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_08045 tig trigger factor 0.39 OKGIIK_07700 xseA exodeoxyribonuclease VII large subunit low > 53
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS16720 trigger factor 0.40 LRK54_RS17185 exodeoxyribonuclease VII large subunit low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS16445 trigger factor 0.40 LRK55_RS17410 exodeoxyribonuclease VII large subunit low > 63
Lysobacter sp. OAE881 0.29 ABIE51_RS14160 trigger factor 0.36 ABIE51_RS13750 exodeoxyribonuclease VII large subunit low > 62
Rhodospirillum rubrum S1H 0.29 Rru_A1549 Trigger factor (NCBI) 0.24 Rru_A0159 Exodeoxyribonuclease VII (NCBI) low > 58
Rhodanobacter sp000427505 FW510-R12 0.29 LRK53_RS12150 trigger factor 0.37 LRK53_RS11825 exodeoxyribonuclease VII large subunit low > 59
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.4049.1 Cell division trigger factor (EC 5.2.1.8) 0.40 Xcc-8004.2251.1 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 74
Sphingobium sp. HT1-2 0.26 GFF4050 Cell division trigger factor (EC 5.2.1.8) 0.27 GFF1052 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) — —
Caulobacter crescentus NA1000 0.26 CCNA_02042 trigger factor chaperone 0.28 CCNA_02329 exodeoxyribonuclease VII large subunit low > 66
Azospirillum sp. SherDot2 0.26 MPMX19_01549 Trigger factor 0.26 MPMX19_01631 Exodeoxyribonuclease 7 large subunit — —
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_02042 trigger factor chaperone 0.28 CCNA_02329 exodeoxyribonuclease VII large subunit 0.66 23
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_0089 trigger factor 0.27 Ga0059261_1440 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS06500 trigger factor 0.27 A4249_RS09265 exodeoxyribonuclease VII large subunit — —
Sinorhizobium meliloti 1021 0.24 SMc02050 trigger factor 0.26 SMc00378 exodeoxyribonuclease VII large subunit low > 103
Agrobacterium fabrum C58 0.24 Atu1664 trigger factor 0.25 Atu0269 exodeoxyribonuclease VII large subunit — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_2190 trigger factor (RefSeq) 0.24 Dshi_2727 exodeoxyribonuclease VII, large subunit (RefSeq) — —
Rhizobium sp. OAE497 0.24 ABIE40_RS08600 trigger factor 0.27 ABIE40_RS01205 exodeoxyribonuclease VII large subunit low > 107
Bosea sp. OAE506 0.23 ABIE41_RS18065 trigger factor 0.26 ABIE41_RS23155 exodeoxyribonuclease VII large subunit low > 77
Rhodopseudomonas palustris CGA009 0.23 TX73_015360 trigger factor 0.26 TX73_005960 exodeoxyribonuclease VII large subunit low > 86
Xanthobacter sp. DMC5 0.23 GFF1159 Trigger factor 0.25 GFF3580 Exodeoxyribonuclease 7 large subunit — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c18160 trigger factor Tig 0.26 PGA1_c23600 exodeoxyribonuclease 7 large subunit low > 62
Fusobacterium nucleatum SB010 0.20 HUW76_01050 trigger factor 0.23 HUW76_06820 exodeoxyribonuclease VII large subunit low > 35
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_0109 trigger factor (RefSeq) 0.30 DvMF_0122 exodeoxyribonuclease VII, large subunit (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU1334 tig trigger factor (TIGR) 0.30 DVU1346 xseA exodeoxyribonuclease VII, large subunit (TIGR) — —
Synechococcus elongatus PCC 7942 0.17 Synpcc7942_2524 tig trigger factor 0.19 Synpcc7942_0368 xseA exodeoxyribonuclease VII large subunit — —
Bifidobacterium breve UCC2003 0.15 BBR_RS14495 trigger factor 0.17 BBR_RS17920 exodeoxyribonuclease VII large subunit — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.08 CA264_01415 trigger factor 0.16 CA264_02365 exodeoxyribonuclease VII large subunit low > 74

Not shown: 5 genomes with orthologs for CSW01_09620 only; 9 genomes with orthologs for CSW01_03975 only