Conservation of cofitness between CSW01_02875 and CSW01_01010 in Vibrio cholerae E7946 ATCC 55056

106 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02875 DNA recombination/repair protein RecA 1.0 CSW01_01010 oligopeptidase A 0.54 18
Pectobacterium carotovorum WPP14 0.83 HER17_RS05045 recombinase RecA 0.71 HER17_RS21300 oligopeptidase A 0.51 59
Rahnella sp. WP5 0.82 EX31_RS07800 recombinase RecA 0.70 EX31_RS05165 oligopeptidase A low > 89
Dickeya dianthicola ME23 0.82 DZA65_RS17450 recombinase RecA 0.71 DZA65_RS00035 oligopeptidase A — —
Dickeya dadantii 3937 0.82 DDA3937_RS16245 recombinase RecA 0.72 DDA3937_RS21265 oligopeptidase A 0.37 51
Dickeya dianthicola 67-19 0.82 HGI48_RS16355 recombinase RecA 0.70 HGI48_RS00045 oligopeptidase A low > 71
Shewanella oneidensis MR-1 0.81 SO3430 recA recA protein (NCBI ptt file) 0.67 SO4699 prlC oligopeptidase A (NCBI ptt file) low > 76
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_01625 recA recombinase RecA 0.71 IJEDHG_12590 prlC oligopeptidase A — —
Erwinia tracheiphila SCR3 0.81 LU632_RS15735 recA recombinase RecA 0.71 LU632_RS19470 prlC oligopeptidase A — —
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2785 protein RecA 0.72 EX28DRAFT_4063 Zn-dependent oligopeptidases — —
Enterobacter sp. TBS_079 0.81 MPMX20_03580 Protein RecA 0.72 MPMX20_04397 Oligopeptidase A low > 85
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS16670 recombinase RecA 0.72 PagCFBP13505_RS17845 oligopeptidase A low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4693 RecA protein 0.72 GFF517 Oligopeptidase A (EC 3.4.24.70) — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_02850 recombinase RecA 0.73 KDGMDA_07425 oligopeptidase A low > 95
Shewanella sp. ANA-3 0.81 Shewana3_1126 recA recombinase A (RefSeq) 0.67 Shewana3_4051 oligopeptidase A (RefSeq) low > 73
Klebsiella michiganensis M5al 0.80 BWI76_RS22180 recombinase RecA 0.72 BWI76_RS26610 oligopeptidase A — —
Pantoea sp. MT58 0.80 IAI47_04300 recombinase RecA 0.72 IAI47_01345 oligopeptidase A low > 76
Escherichia coli ECRC99 0.80 KEDOAH_07430 recA recombinase RecA 0.72 KEDOAH_11730 prlC oligopeptidase A — —
Escherichia coli ECRC101 0.80 MCAODC_11230 recA recombinase RecA 0.72 MCAODC_06930 prlC oligopeptidase A low > 88
Escherichia fergusonii Becca 0.80 EFB2_01225 Protein RecA 0.72 EFB2_00317 Oligopeptidase A low > 86
Escherichia coli ECRC100 0.80 OKFHMN_20705 recA recombinase RecA 0.72 OKFHMN_16415 prlC oligopeptidase A — —
Escherichia coli ECOR38 0.80 HEPCGN_19900 recA recombinase RecA 0.72 HEPCGN_15325 prlC oligopeptidase A low > 88
Escherichia coli ECRC98 0.80 JDDGAC_24370 recA recombinase RecA 0.72 JDDGAC_20045 prlC oligopeptidase A — —
Escherichia coli ECRC62 0.80 BNILDI_11105 recA recombinase RecA 0.72 BNILDI_03210 prlC oligopeptidase A low > 75
Escherichia coli BW25113 0.80 b2699 recA recombinase A (NCBI) 0.72 b3498 prlC oligopeptidase A (NCBI) low > 76
Escherichia coli ECOR27 0.80 NOLOHH_12545 recA recombinase RecA 0.72 NOLOHH_08350 prlC oligopeptidase A low > 76
Escherichia coli Nissle 1917 0.80 ECOLIN_RS15060 recombinase RecA 0.72 ECOLIN_RS19985 oligopeptidase A — —
Escherichia coli ECRC102 0.80 NIAGMN_18475 recA recombinase RecA 0.72 NIAGMN_14180 prlC oligopeptidase A — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_01035 Protein RecA 0.72 OHPLBJKB_00205 Oligopeptidase A low > 74
Escherichia coli BL21 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor 0.72 ECD_03347 oligopeptidase A low > 61
Shewanella amazonensis SB2B 0.80 Sama_1046 recA recombinase A (RefSeq) 0.67 Sama_3546 oligopeptidase A (RefSeq) low > 62
Erwinia amylovora T8 0.80 OLJFJH_09575 recombinase RecA 0.71 OLJFJH_04530 Oligopeptidase A low > 58
Shewanella loihica PV-4 0.80 Shew_1215 recA recombinase A (RefSeq) 0.68 Shew_3657 oligopeptidase A (RefSeq) low > 60
Serratia liquefaciens MT49 0.80 IAI46_03840 recombinase RecA 0.71 IAI46_24210 oligopeptidase A low > 86
Alteromonas macleodii MIT1002 0.77 MIT1002_00955 Recombinase A 0.66 MIT1002_03633 Oligopeptidase A low > 70
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_16805 recombinase RecA 0.56 AO353_10775 oligopeptidase A 0.27 95
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2993 RecA protein 0.56 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_05670 recombinase RecA 0.56 AO356_11120 oligopeptidase A low > 104
Pseudomonas sp. RS175 0.73 PFR28_00472 Protein RecA 0.56 PFR28_04699 Oligopeptidase A low > 88
Pseudomonas sp. S08-1 0.73 OH686_18205 protein RecA 0.56 OH686_12360 Oligopeptidase A low > 80
Pseudomonas aeruginosa PA14 0.73 IKLFDK_18465 recombinase RecA 0.58 IKLFDK_25215 oligopeptidase A low > 100
Pseudomonas segetis P6 0.73 MPMX49_03330 Protein RecA 0.57 MPMX49_00359 Oligopeptidase A low > 75
Pseudomonas sp. DMC3 0.73 GFF2111 Protein RecA 0.56 GFF663 Oligopeptidase A low > 89
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_01333 Protein RecA 0.56 GEMAOFIL_00254 Oligopeptidase A low > 93
Pseudomonas sp. SVBP6 0.73 COO64_RS19930 recA recombinase RecA 0.56 COO64_RS02335 prlC oligopeptidase A low > 93
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3143 RecA protein 0.56 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) 0.32 79
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4668 RecA protein 0.57 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) low > 87
Pseudomonas fluorescens SBW25 0.72 PFLU_RS05885 recombinase RecA 0.56 PFLU_RS00240 oligopeptidase A low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS05885 recombinase RecA 0.56 PFLU_RS00240 oligopeptidase A low > 109
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1531 protein RecA 0.59 B158DRAFT_0457 Zn-dependent oligopeptidases low > 40
Pseudomonas stutzeri RCH2 0.72 Psest_2872 protein RecA 0.57 Psest_4320 Zn-dependent oligopeptidases 0.19 47
Pseudomonas simiae WCS417 0.72 PS417_05815 recombinase RecA 0.56 PS417_00245 oligopeptidase A 0.34 72
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1378 RecA protein 0.57 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A low > 86
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1378 RecA protein 0.57 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A low > 86
Pseudomonas putida KT2440 0.72 PP_1629 Protein RecA 0.56 PP_0096 oligopeptidase A low > 96
Pseudomonas sp. BP01 0.72 JOY50_RS23780 recA recombinase RecA 0.56 JOY50_RS21245 prlC oligopeptidase A low > 84
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS14980 recombinase RecA 0.47 LRK54_RS08615 M3 family metallopeptidase 0.49 37
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14695 recombinase RecA 0.47 LRK55_RS08380 M3 family metallopeptidase low > 63
Marinobacter adhaerens HP15 0.71 HP15_1048 recombinase A 0.58 HP15_3759 oligopeptidase A-like protein low > 73
Acinetobacter radioresistens SK82 0.71 MPMX26_01308 Protein RecA 0.46 MPMX26_02685 Oligopeptidase A low > 36
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03740 recA recombinase RecA 0.48 OKGIIK_15380 dcp oligopeptidase A low > 53
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13640 recombinase RecA 0.48 LRK53_RS02390 M3 family metallopeptidase — —
Acinetobacter baumannii LAC-4 0.71 RR41_RS08110 recombinase RecA 0.47 RR41_RS02340 M3 family metallopeptidase — —
Lysobacter sp. OAE881 0.69 ABIE51_RS07800 recombinase RecA 0.21 ABIE51_RS09155 M3 family metallopeptidase low > 62
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS00660 recombinase RecA 0.48 ABZR86_RS14940 M3 family metallopeptidase low > 74
Methylophilus sp. DMC18 0.67 GFF841 Protein RecA 0.52 GFF2262 Oligopeptidase A low > 43
Castellaniella sp019104865 MT123 0.67 ABCV34_RS04460 recombinase RecA 0.42 ABCV34_RS04180 M3 family metallopeptidase 0.57 23
Rhizobium sp. OAE497 0.67 ABIE40_RS10320 recombinase RecA 0.27 ABIE40_RS18135 M3 family metallopeptidase low > 107
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.3111.1 RecA protein 0.47 Xcc-8004.4539.1 Oligopeptidase A (EC 3.4.24.70) — —
Agrobacterium fabrum C58 0.66 Atu1874 RecA protein 0.27 Atu2664 peptidyl-dipeptidase low > 89
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS16360 recombinase RecA 0.48 BPHYT_RS12875 oligopeptidase A — —
Sphingomonas koreensis DSMZ 15582 0.66 Ga0059261_0204 protein RecA 0.22 Ga0059261_2479 Zn-dependent oligopeptidases low > 68
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS02335 recombinase RecA 0.48 QEN71_RS05695 M3 family metallopeptidase — —
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04208 RecA protein 0.46 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A low > 103
Paraburkholderia graminis OAS925 0.66 ABIE53_003448 recombination protein RecA 0.48 ABIE53_002798 oligopeptidase A low > 113
Dechlorosoma suillum PS 0.66 Dsui_0707 protein RecA 0.48 Dsui_0046 Zn-dependent oligopeptidase 0.40 45
Azospirillum brasilense Sp245 0.66 AZOBR_RS11095 recombinase RecA 0.24 AZOBR_RS23485 peptidase M3 low > 97
Rhodopseudomonas palustris CGA009 0.66 TX73_019940 recombinase RecA 0.26 TX73_004495 M3 family metallopeptidase — —
Sinorhizobium meliloti 1021 0.66 SMc00760 recombinase A 0.27 SMc04403 peptidyl-dipeptidase A protein low > 103
Phaeobacter inhibens DSM 17395 0.65 PGA1_c15260 protein recA (recombinase A) 0.26 PGA1_c26590 peptidyl-dipeptidase Dcp low > 62
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS03270 protein RecA 0.48 HSERO_RS07290 oligopeptidase A 0.36 66
Brevundimonas sp. GW460-12-10-14-LB2 0.64 A4249_RS12615 recombinase RecA 0.21 A4249_RS12525 M3 family metallopeptidase low > 48
Variovorax sp. SCN45 0.64 GFF5390 RecA protein 0.44 GFF963 Oligopeptidase A (EC 3.4.24.70) low > 127
Ralstonia solanacearum PSI07 0.64 RPSI07_RS21260 recombinase RecA 0.47 RPSI07_RS15795 oligopeptidase A low > 81
Variovorax sp. OAS795 0.64 ABID97_RS02275 recombinase RecA 0.44 ABID97_RS14080 M3 family metallopeptidase 0.57 5
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS07965 recombinase RecA 0.47 ABZR87_RS13490 M3 family metallopeptidase low > 80
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1255 RecA protein 0.43 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) — —
Ralstonia solanacearum UW163 0.63 UW163_RS01625 recombinase RecA 0.47 UW163_RS15000 oligopeptidase A — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS12010 recombinase RecA 0.47 RALBFv3_RS01690 oligopeptidase A low > 76
Bosea sp. OAE506 0.63 ABIE41_RS13335 recombinase RecA 0.24 ABIE41_RS12985 M3 family metallopeptidase low > 77
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03080 recombinase RecA 0.47 RR42_RS07340 oligopeptidase A low > 128
Ralstonia solanacearum GMI1000 0.63 RS_RS02760 DNA recombination/repair protein RecA 0.47 RS_RS08035 oligopeptidase A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF2500 RecA protein 0.43 GFF4214 Oligopeptidase A (EC 3.4.24.70) low > 90
Pontibacter actiniarum KMM 6156, DSM 19842 0.60 CA264_19695 DNA recombination/repair protein RecA 0.21 CA264_01885 peptidase M3 — —
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_01141 RecA protein 0.22 CCNA_03816 peptidyl-dipeptidase DCP — —
Dinoroseobacter shibae DFL-12 0.60 Dshi_1643 recA protein (RefSeq) 0.22 Dshi_2973 Peptidyl-dipeptidase Dcp (RefSeq) low > 64
Caulobacter crescentus NA1000 0.60 CCNA_01141 RecA protein 0.22 CCNA_03816 peptidyl-dipeptidase DCP low > 66
Synechocystis sp000284455 PCC 6803 0.59 SGL_RS18280 recombinase RecA 0.42 SGL_RS17300 M3 family metallopeptidase — —
Cellulophaga baltica 18 0.59 M666_RS05260 recombinase RecA 0.36 M666_RS01280 M3 family metallopeptidase low > 67
Phocaeicola dorei CL03T12C01 0.57 ABI39_RS11930 recombinase RecA 0.35 ABI39_RS13165 M3 family metallopeptidase low > 72
Mucilaginibacter yixingensis YX-36 DSM 26809 0.57 ABZR88_RS16740 recombinase RecA 0.24 ABZR88_RS16390 peptidyl-dipeptidase Dcp low > 71
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS15965 recombinase RecA 0.35 HMPREF1058_RS17165 M3 family metallopeptidase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_0044 protein RecA 0.33 Echvi_2572 Zn-dependent oligopeptidases low > 79
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS00095 recombinase RecA 0.29 HMPREF1078_RS14650 M3 family metallopeptidase low > 61
Bacteroides stercoris CC31F 0.55 HMPREF1181_RS11910 recombinase RecA 0.35 HMPREF1181_RS06150 M3 family metallopeptidase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.55 BT4610 RecA (NCBI ptt file) 0.32 BT4262 peptidyl-dipeptidase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.55 BACOVA_05402 RecA protein 0.32 BACOVA_05095 peptidase family M3 low > 96

Not shown: 11 genomes with orthologs for CSW01_02875 only; 0 genomes with orthologs for CSW01_01010 only