Conservation of cofitness between CSW01_12250 and CSW01_00260 in Vibrio cholerae E7946 ATCC 55056

109 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 1.0 CSW01_00260 5-(carboxyamino)imidazole ribonucleotide synthase 0.78 7
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD 0.29 IJEDHG_01025 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Pectobacterium carotovorum WPP14 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD 0.30 HER17_RS06470 5-(carboxyamino)imidazole ribonucleotide synthase low > 75
Erwinia amylovora T8 0.70 OLJFJH_08835 site-specific tyrosine recombinase XerD 0.28 OLJFJH_17635 5-(carboxyamino)imidazole ribonucleotide synthase low > 58
Erwinia tracheiphila SCR3 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD 0.28 LU632_RS15250 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Rahnella sp. WP5 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD 0.29 EX31_RS22620 5-(carboxyamino)imidazole ribonucleotide synthase 0.44 66
Serratia liquefaciens MT49 0.69 IAI46_20730 site-specific tyrosine recombinase XerD 0.29 IAI46_05370 5-(carboxyamino)imidazole ribonucleotide synthase low > 87
Pantoea sp. MT58 0.69 IAI47_03820 site-specific tyrosine recombinase XerD 0.28 IAI47_14355 5-(carboxyamino)imidazole ribonucleotide synthase low > 76
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD 0.27 PagCFBP13505_RS10855 5-(carboxyamino)imidazole ribonucleotide synthase
Enterobacter sp. TBS_079 0.68 MPMX20_03753 Tyrosine recombinase XerD 0.27 MPMX20_01097 N5-carboxyaminoimidazole ribonucleotide synthase low > 85
Dickeya dadantii 3937 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD 0.28 DDA3937_RS15110 5-(carboxyamino)imidazole ribonucleotide synthase low > 74
Klebsiella pneumoniae MKP103 0.68 KDGMDA_04300 site-specific tyrosine recombinase XerD 0.29 KDGMDA_15000 5-(carboxyamino)imidazole ribonucleotide synthase low > 95
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2945 tyrosine recombinase XerD 0.28 EX28DRAFT_2460 phosphoribosylaminoimidazole carboxylase, PurK protein
Dickeya dianthicola 67-19 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD 0.29 HGI48_RS15190 5-(carboxyamino)imidazole ribonucleotide synthase low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD 0.29 DZA65_RS15995 5-(carboxyamino)imidazole ribonucleotide synthase
Klebsiella michiganensis M5al 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD 0.29 BWI76_RS07065 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECOR38 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD 0.27 HEPCGN_06480 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 88
Escherichia coli Nissle 1917 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD 0.28 ECOLIN_RS03025 5-(carboxyamino)imidazole ribonucleotide synthase low > 55
Escherichia coli ECRC101 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD 0.27 MCAODC_27060 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC100 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD 0.27 OKFHMN_07840 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC99 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD 0.27 KEDOAH_20130 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli BW25113 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.27 b0522 purK phosphoribosylaminoimidazole carboxylase (NCBI) low > 76
Escherichia coli ECOR27 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD 0.28 NOLOHH_00830 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 76
Escherichia fergusonii Becca 0.67 EFB2_01007 Tyrosine recombinase XerD 0.28 EFB2_03540 N5-carboxyaminoimidazole ribonucleotide synthase low > 86
Escherichia coli ECRC98 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD 0.27 JDDGAC_11490 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli BL21 0.67 ECD_02726 site-specific tyrosine recombinase 0.27 ECD_00472 N5-carboxyaminoimidazole ribonucleotide synthase low > 61
Escherichia coli ECRC62 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD 0.27 BNILDI_22260 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD 0.27 OHPLBJKB_03159 N5-carboxyaminoimidazole ribonucleotide synthase low > 74
Escherichia coli ECRC102 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD 0.27 NIAGMN_05895 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2991 Tyrosine recombinase XerD 0.29 GFF4438 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) low > 78
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_04365 recombinase XerD 0.35 AO353_09935 phosphoribosylaminoimidazole carboxylase
Pseudomonas sp. SVBP6 0.58 COO64_RS04910 xerD site-specific tyrosine recombinase XerD 0.36 COO64_RS01745 5-(carboxyamino)imidazole ribonucleotide synthase low > 93
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_1721 Tyrosine recombinase XerD 0.36 PfGW456L13_747 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD 0.37 Pf6N2E2_4081 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_06385 recombinase XerD 0.36 AO356_11075 phosphoribosylaminoimidazole carboxylase
Pseudomonas sp. BP01 0.58 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD 0.37 JOY50_RS08825 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas sp. DMC3 0.58 GFF1987 Tyrosine recombinase XerD 0.36 GFF485 N5-carboxyaminoimidazole ribonucleotide synthase low > 89
Pseudomonas putida KT2440 0.58 PP_1468 Tyrosine recombinase XerD 0.36 PP_5335 N5-carboxyaminoimidazole ribonucleotide synthase
Pseudomonas sp. RS175 0.58 PFR28_00331 Tyrosine recombinase XerD 0.37 PFR28_04495 N5-carboxyaminoimidazole ribonucleotide synthase
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD 0.35 Pf1N1B4_2028 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Pseudomonas simiae WCS417 0.57 PS417_22895 tyrosine recombinase XerD 0.36 PS417_28115 phosphoribosylaminoimidazole carboxylase
Pseudomonas lactucae CFBP13502 0.57 GEMAOFIL_04729 Tyrosine recombinase XerD 0.36 GEMAOFIL_00089 N5-carboxyaminoimidazole ribonucleotide synthase
Pseudomonas fluorescens SBW25 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1286 tyrosine recombinase XerD subunit 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1286 tyrosine recombinase XerD subunit 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS42845 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.34 DQ20_RS57855 5-(carboxyamino)imidazole ribonucleotide synthase
Shewanella oneidensis MR-1 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.28 SO3555 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file) low > 76
Pseudomonas aeruginosa PA14 0.56 IKLFDK_19085 site-specific tyrosine recombinase XerD 0.34 IKLFDK_26300 5-(carboxyamino)imidazole ribonucleotide synthase
Shewanella sp. ANA-3 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) 0.29 Shewana3_3156 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) low > 73
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS14280 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.34 DY961_RS25395 5-(carboxyamino)imidazole ribonucleotide synthase low > 100
Pseudomonas orientalis W4I3 0.56 QF045_RS25085 site-specific tyrosine recombinase XerD 0.36 QF045_RS02475 5-(carboxyamino)imidazole ribonucleotide synthase low > 93
Pseudomonas sp. S08-1 0.56 OH686_17750 tyrosine recombinase XerD 0.37 OH686_13380 N5-carboxyaminoimidazole ribonucleotide synthase
Pseudomonas segetis P6 0.55 MPMX49_01575 Tyrosine recombinase XerD 0.36 MPMX49_00154 N5-carboxyaminoimidazole ribonucleotide synthase
Shewanella amazonensis SB2B 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) 0.29 Sama_1063 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.55 MIT1002_00786 Tyrosine recombinase XerD 0.46 MIT1002_00522 N5-carboxyaminoimidazole ribonucleotide synthase low > 70
Pseudomonas stutzeri RCH2 0.54 Psest_3129 tyrosine recombinase XerD 0.37 Psest_4068 phosphoribosylaminoimidazole carboxylase, PurK protein
Shewanella loihica PV-4 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) 0.29 Shew_1249 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) low > 60
Lysobacter sp. OAE881 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.32 ABIE51_RS15390 5-(carboxyamino)imidazole ribonucleotide synthase low > 62
Marinobacter adhaerens HP15 0.53 HP15_762 site-specific tyrosine recombinase XerD 0.33 HP15_2350 phosphoribosylaminoimidazole carboxylase ATPase subunit
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_2265 tyrosine recombinase XerD 0.31 B158DRAFT_0610 5-(carboxyamino)imidazole ribonucleotide synthase
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS15950 tyrosine recombinase XerD 0.23 BPHYT_RS16245 phosphoribosylaminoimidazole carboxylase low > 109
Ralstonia solanacearum PSI07 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD 0.20 RPSI07_RS21130 5-(carboxyamino)imidazole ribonucleotide synthase
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04126 integrase/recombinase XerD 0.24 H281DRAFT_04185 5-(carboxyamino)imidazole ribonucleotide synthase
Castellaniella sp019104865 MT123 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD 0.23 ABCV34_RS00565 5-(carboxyamino)imidazole ribonucleotide synthase
Paraburkholderia graminis OAS925 0.50 ABIE53_003361 integrase/recombinase XerD 0.23 ABIE53_003423 5-(carboxyamino)imidazole ribonucleotide synthase
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD 0.20 RALBFv3_RS12200 5-(carboxyamino)imidazole ribonucleotide synthase
Ralstonia solanacearum UW163 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD 0.20 UW163_RS01410 5-(carboxyamino)imidazole ribonucleotide synthase
Ralstonia solanacearum GMI1000 0.50 RS_RS12755 tyrosine recombinase XerD 0.20 RS_RS02885 5-(carboxyamino)imidazole ribonucleotide synthase
Methylophilus sp. DMC18 0.50 GFF2342 Tyrosine recombinase XerD 0.24 GFF1769 N5-carboxyaminoimidazole ribonucleotide synthase
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD 0.22 QEN71_RS02450 5-(carboxyamino)imidazole ribonucleotide synthase
Dechlorosoma suillum PS 0.49 Dsui_1217 tyrosine recombinase XerD 0.23 Dsui_0091 phosphoribosylaminoimidazole carboxylase, PurK protein
Acidovorax sp. GW101-3H11 0.48 Ac3H11_302 Tyrosine recombinase XerD 0.22 Ac3H11_675 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS04265 tyrosine recombinase XerD 0.23 HSERO_RS03370 phosphoribosylaminoimidazole carboxylase
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD 0.32 Xcc-8004.2012.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) low > 74
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS03345 recombinase XerD 0.20 RR42_RS03230 phosphoribosylaminoimidazole carboxylase
Variovorax sp. OAS795 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD 0.23 ABID97_RS01700 5-(carboxyamino)imidazole ribonucleotide synthase
Variovorax sp. SCN45 0.47 GFF2772 Site-specific tyrosine recombinase XerD 0.24 GFF5513 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF5461 Tyrosine recombinase XerD 0.25 GFF2770 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.30 ABZR86_RS09830 5-(carboxyamino)imidazole ribonucleotide synthase
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.20 ABZR87_RS08090 5-(carboxyamino)imidazole ribonucleotide synthase
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD 0.32 OKGIIK_03050 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD 0.30 LRK55_RS13530 5-(carboxyamino)imidazole ribonucleotide synthase 0.56 48
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD 0.30 LRK54_RS13815 5-(carboxyamino)imidazole ribonucleotide synthase
Acinetobacter baumannii LAC-4 0.44 RR41_RS17765 site-specific tyrosine recombinase XerD 0.39 RR41_RS18910 5-(carboxyamino)imidazole ribonucleotide synthase
Rhodanobacter sp000427505 FW510-R12 0.43 LRK53_RS05285 site-specific tyrosine recombinase XerD 0.29 LRK53_RS14785 5-(carboxyamino)imidazole ribonucleotide synthase low > 59
Azospirillum sp. SherDot2 0.38 MPMX19_02643 Tyrosine recombinase XerD 0.28 MPMX19_01418 N5-carboxyaminoimidazole ribonucleotide synthase
Rhizobium sp. OAE497 0.38 ABIE40_RS17685 site-specific tyrosine recombinase XerD 0.26 ABIE40_RS16070 5-(carboxyamino)imidazole ribonucleotide synthase low > 107
Sinorhizobium meliloti 1021 0.36 SMc00691 site-specific tyrosine recombinase XerD 0.27 SMc04002 phosphoribosylaminoimidazole carboxylase ATPase subunit low > 103
Rhodopseudomonas palustris CGA009 0.36 TX73_002625 site-specific tyrosine recombinase XerD 0.26 TX73_021645 5-(carboxyamino)imidazole ribonucleotide synthase
Agrobacterium fabrum C58 0.35 Atu3629 site-specific tyrosine recombinase XerD 0.26 Atu3755 phosphoribosylaminoimidazole carboxylase ATPase subunit
Xanthobacter sp. DMC5 0.35 GFF3081 Tyrosine recombinase XerD 0.26 GFF3228 N5-carboxyaminoimidazole ribonucleotide synthase
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_00850 site-specific tyrosine recombinase XerD 0.21 CA264_12600 5-(carboxyamino)imidazole ribonucleotide synthase
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS09520 site-specific tyrosine recombinase XerD 0.22 CA265_RS07745 5-(carboxyamino)imidazole ribonucleotide synthase
Azospirillum brasilense Sp245 0.34 AZOBR_RS03240 recombinase XerD 0.28 AZOBR_RS06140 phosphoribosylaminoimidazole carboxylase
Bifidobacterium breve UCC2003 0.33 BBR_RS16755 site-specific tyrosine recombinase XerD 0.18 BBR_RS13300 5-(carboxyamino)imidazole ribonucleotide synthase low > 34
Dinoroseobacter shibae DFL-12 0.33 Dshi_1611 integrase family protein (RefSeq) 0.26 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.33 Rru_A3738 Phage integrase (NCBI) 0.23 Rru_A1051 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI)
Bosea sp. OAE506 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.26 ABIE41_RS09245 5-(carboxyamino)imidazole ribonucleotide synthase low > 77
Mucilaginibacter yixingensis YX-36 DSM 26809 0.32 ABZR88_RS10220 site-specific tyrosine recombinase XerD 0.19 ABZR88_RS09290 5-(carboxyamino)imidazole ribonucleotide synthase
Cellulophaga baltica 18 0.31 M666_RS11310 site-specific tyrosine recombinase XerD 0.19 M666_RS01265 5-(carboxyamino)imidazole ribonucleotide synthase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1809 tyrosine recombinase XerD 0.22 Echvi_0884 phosphoribosylaminoimidazole carboxylase, PurK protein
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_03101 site-specific tyrosine recombinase XerD 0.28 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit low > 67
Caulobacter crescentus NA1000 0.31 CCNA_03101 site-specific tyrosine recombinase XerD 0.28 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit low > 66
Phaeobacter inhibens DSM 17395 0.31 PGA1_c14060 tyrosine recombinase XerD 0.25 PGA1_c24870 phosphoribosylaminoimidazole carboxylase ATPase subunit PurK low > 62
Magnetospirillum magneticum AMB-1 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD 0.24 AMB_RS11140 5-(carboxyamino)imidazole ribonucleotide synthase
Sphingobium sp. HT1-2 0.30 GFF2416 Site-specific tyrosine recombinase XerD 0.28 GFF1298 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18)
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS04165 site-specific tyrosine recombinase XerD 0.25 A4249_RS08935 5-(carboxyamino)imidazole ribonucleotide synthase
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_3595 Site-specific recombinase XerD 0.27 Ga0059261_1428 5-(carboxyamino)imidazole ribonucleotide synthase
Mycobacterium tuberculosis H37Rv 0.29 Rv2894c Probable integrase/recombinase XerC 0.23 Rv3276c Probable phosphoribosylaminoimidazole carboxylase ATPase subunit PurK (air carboxylase) (AIRC)

Not shown: 10 genomes with orthologs for CSW01_12250 only; 3 genomes with orthologs for CSW01_00260 only