Conservation of cofitness between CA265_RS02960 and CA265_RS13030 in Pedobacter sp. GW460-11-11-14-LB5

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pedobacter sp. GW460-11-11-14-LB5 1.0 CA265_RS02960 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 1.0 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.72 4
Mucilaginibacter yixingensis YX-36 DSM 26809 0.56 ABZR88_RS17470 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.84 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.55 CA264_12070 tRNA dimethylallyltransferase 0.76 CA264_00655 tRNA-guanine(34) transglycosylase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_2323 tRNA dimethylallyltransferase 0.74 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming — —
Bacteroides ovatus ATCC 8483 0.49 BACOVA_05050 tRNA dimethylallyltransferase 0.70 BACOVA_02570 tRNA-guanine transglycosylase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.49 BT4203 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.70 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS08065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.71 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt low > 67
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS06385 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.70 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt low > 56
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS00520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.71 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt low > 72
Parabacteroides merdae CL09T00C40 0.48 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.69 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt low > 61
Lysobacter sp. OAE881 0.33 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt low > 62
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.44 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) — —
Rahnella sp. WP5 0.33 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.50 79
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_1951 tRNA dimethylallyltransferase 0.45 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 40
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase 0.47 HSERO_RS06175 queuine tRNA-ribosyltransferase — —
Fusobacterium nucleatum SB010 0.32 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.48 HUW76_09025 tRNA guanosine(34) transglycosylase Tgt low > 35
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt low > 62
Shewanella loihica PV-4 0.32 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.45 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.59 8
Escherichia coli Nissle 1917 0.32 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt — —
Escherichia fergusonii Becca 0.32 EFB2_04364 tRNA dimethylallyltransferase 0.45 EFB2_03651 Queuine tRNA-ribosyltransferase low > 86
Serratia liquefaciens MT49 0.31 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt low > 86
Rhodanobacter denitrificans MT42 0.31 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt — —
Shewanella oneidensis MR-1 0.31 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.45 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) low > 76
Escherichia coli ECOR38 0.31 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_03871 tRNA dimethylallyltransferase 0.45 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase — —
Escherichia coli ECOR27 0.31 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt low > 75
Pectobacterium carotovorum WPP14 0.31 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt low > 75
Escherichia coli BL21 0.31 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 0.45 ECD_00354 tRNA-guanine transglycosylase low > 61
Escherichia coli BW25113 0.31 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) 0.45 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) low > 76
Escherichia coli ECRC98 0.31 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt — —
Klebsiella michiganensis M5al 0.31 BWI76_RS02530 tRNA dimethylallyltransferase 0.46 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt — —
Escherichia coli ECRC99 0.31 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt — —
Escherichia coli ECRC101 0.31 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt low > 87
Shewanella sp. ANA-3 0.31 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.45 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) — —
Escherichia coli ECRC100 0.31 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.72 33
Escherichia coli ECRC102 0.31 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt — —
Escherichia coli ECRC62 0.31 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt low > 75
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt low > 59
Enterobacter asburiae PDN3 0.31 EX28DRAFT_3368 tRNA dimethylallyltransferase 0.46 EX28DRAFT_2565 tRNA-guanine transglycosylase low > 76
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt — —
Enterobacter sp. TBS_079 0.31 MPMX20_00452 tRNA dimethylallyltransferase 0.46 MPMX20_00997 Queuine tRNA-ribosyltransferase low > 85
Dickeya dianthicola 67-19 0.31 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt low > 71
Dickeya dianthicola ME23 0.31 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt low > 75
Pseudomonas putida KT2440 0.30 PP_4895 tRNA dimethylallyltransferase 0.44 PP_0833 queuine tRNA-ribosyltransferase 0.43 13
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt — —
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_04711 tRNA dimethylallyltransferase 0.46 H281DRAFT_04670 tRNA-guanine transglycosylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.45 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 78
Dickeya dadantii 3937 0.30 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt low > 74
Pantoea sp. MT58 0.30 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.30 19
Castellaniella sp019104865 MT123 0.30 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt — —
Bifidobacterium breve UCC2003 0.30 BBR_RS16565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.33 BBR_RS10715 tRNA-guanine(34) transglycosylase — —
Shewanella amazonensis SB2B 0.30 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.44 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt — —
Sinorhizobium meliloti 1021 0.30 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 SMc01206 queuine tRNA-ribosyltransferase — —
Alteromonas macleodii MIT1002 0.29 MIT1002_03789 tRNA dimethylallyltransferase 0.44 MIT1002_02813 Queuine tRNA-ribosyltransferase — —
Variovorax sp. OAS795 0.29 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt — —
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS03645 tRNA dimethylallyltransferase 0.46 BPHYT_RS03410 queuine tRNA-ribosyltransferase low > 109
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0571 tRNA isopentenyltransferase 0.43 Psyr_1228 tRNA-guanine transglycosylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0571 tRNA isopentenyltransferase 0.43 Psyr_1228 tRNA-guanine transglycosylase — —
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2490 miaA tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 Synpcc7942_0455 tgt queuine tRNA-ribosyltransferase low > 38
Desulfovibrio vulgaris Miyazaki F 0.29 DvMF_0174 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.47 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) — —
Ralstonia solanacearum GMI1000 0.29 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt low > 80
Pseudomonas stutzeri RCH2 0.29 Psest_0682 tRNA dimethylallyltransferase 0.44 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming — —
Erwinia tracheiphila SCR3 0.29 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt low > 74
Ralstonia solanacearum PSI07 0.28 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt low > 81
Pseudomonas sp. RS175 0.28 PFR28_05120 tRNA dimethylallyltransferase 0.44 PFR28_00277 Queuine tRNA-ribosyltransferase low > 88
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_08660 tRNA dimethylallyltransferase 0.43 AO356_06690 queuine tRNA-ribosyltransferase 0.42 7
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.43 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) — —
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt low > 80
Dechlorosoma suillum PS 0.28 Dsui_1552 tRNA isopentenyltransferase MiaA 0.46 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming — —
Ralstonia solanacearum UW163 0.28 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt — —
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_13140 tRNA dimethylallyltransferase 0.43 AO353_15790 queuine tRNA-ribosyltransferase — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.37 49
Rhizobium sp. OAE497 0.27 ABIE40_RS11505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.43 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 90
Pseudomonas simiae WCS417 0.27 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 PS417_23245 queuine tRNA-ribosyltransferase — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.44 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.57 1
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.36 20
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase 0.47 RR42_RS17400 queuine tRNA-ribosyltransferase — —
Variovorax sp. SCN45 0.27 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.46 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) — —
Pseudomonas fluorescens SBW25 0.27 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt low > 109
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.43 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) — —
Caulobacter crescentus NA1000 0.27 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 CCNA_01659 queuine tRNA-ribosyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 CCNA_01659 queuine tRNA-ribosyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU1533 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (TIGR) 0.46 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) — —
Pseudomonas sp. S08-1 0.27 OH686_09475 tRNA dimethylallyltransferase 0.45 OH686_17430 tRNA-guanine transglycosylase low > 80
Acinetobacter radioresistens SK82 0.27 MPMX26_01208 tRNA dimethylallyltransferase 0.47 MPMX26_00438 Queuine tRNA-ribosyltransferase — —
Rhodopseudomonas palustris CGA009 0.26 TX73_010460 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 TX73_013485 tRNA guanosine(34) transglycosylase Tgt low > 86
Acidovorax sp. GW101-3H11 0.26 Ac3H11_319 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.45 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.27 51
Agrobacterium fabrum C58 0.25 Atu2039 tRNA delta(2)-isopentenylpyrophosphate 0.43 Atu1677 queuine tRNA-ribosyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS05030 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt — —
Magnetospirillum magneticum AMB-1 0.24 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt low > 64
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0069 tRNA dimethylallyltransferase 0.42 Ga0059261_1017 tRNA-guanine transglycosylase 0.54 7
Azospirillum sp. SherDot2 0.24 MPMX19_01778 tRNA dimethylallyltransferase 0.43 MPMX19_01697 Queuine tRNA-ribosyltransferase — —
Azospirillum brasilense Sp245 0.22 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 AZOBR_RS06295 queuine tRNA-ribosyltransferase — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_1492 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.42 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) — —
Bosea sp. OAE506 0.22 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt low > 77
Phaeobacter inhibens DSM 17395 0.20 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA 0.44 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt — —
Rhodospirillum rubrum S1H 0.18 Rru_A0466 tRNA isopentenyltransferase (NCBI) 0.46 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) — —

Not shown: 2 genomes with orthologs for CA265_RS02960 only; 1 genomes with orthologs for CA265_RS13030 only