Conservation of cofitness between BPHYT_RS18705 and BPHYT_RS33900 in Burkholderia phytofirmans PsJN

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS18705 5,10-methylenetetrahydrofolate reductase 1.0 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.56 4
Paraburkholderia graminis OAS925 0.97 ABIE53_000061 methylenetetrahydrofolate reductase (NADPH) 0.98 ABIE53_004804 3-isopropylmalate dehydrogenase 0.92 4
Paraburkholderia bryophila 376MFSha3.1 0.96 H281DRAFT_05801 5,10-methylenetetrahydrofolate reductase (NAD(P)) 0.98 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.66 12
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS28715 methylenetetrahydrofolate reductase [NAD(P)H] 0.96 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.84 38
Ralstonia solanacearum GMI1000 0.80 RS_RS00460 methylenetetrahydrofolate reductase [NAD(P)H] 0.89 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.80 RR42_RS01385 5,10-methylenetetrahydrofolate reductase 0.89 RR42_RS14385 3-isopropylmalate dehydrogenase 0.77 16
Ralstonia solanacearum UW163 0.79 UW163_RS03705 methylenetetrahydrofolate reductase [NAD(P)H] 0.89 UW163_RS11115 3-isopropylmalate dehydrogenase
Ralstonia solanacearum IBSBF1503 0.79 RALBFv3_RS09875 methylenetetrahydrofolate reductase [NAD(P)H] 0.89 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.57 38
Ralstonia solanacearum PSI07 0.79 RPSI07_RS23495 methylenetetrahydrofolate reductase [NAD(P)H] 0.89 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.63 31
Ralstonia sp. UNC404CL21Col 0.79 ABZR87_RS04865 methylenetetrahydrofolate reductase [NAD(P)H] 0.89 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.82 1
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS21425 5,10-methylenetetrahydrofolate reductase 0.86 HSERO_RS16500 3-isopropylmalate dehydrogenase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF1692 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.77 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Dechlorosoma suillum PS 0.64 Dsui_0640 5,10-methylenetetrahydrofolate reductase 0.68 Dsui_3198 3-isopropylmalate dehydrogenase
Variovorax sp. SCN45 0.63 GFF2055 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Acidovorax sp. GW101-3H11 0.63 Ac3H11_3045 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.79 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.89 9
Marinobacter adhaerens HP15 0.62 HP15_2917 5,10-methylenetetrahydrofolate reductase-like protein 0.64 HP15_1832 3-isopropylmalate dehydrogenase 0.96 4
Variovorax sp. OAS795 0.62 ABID97_RS25015 methylenetetrahydrofolate reductase [NAD(P)H] 0.79 ABID97_RS08455 3-isopropylmalate dehydrogenase
Pseudomonas sp. RS175 0.60 PFR28_04202 5,10-methylenetetrahydrofolate reductase 0.64 PFR28_02821 3-isopropylmalate dehydrogenase 0.77 6
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_4638 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.64 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.72 11
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_13605 5,10-methylenetetrahydrofolate reductase 0.64 AO356_21415 3-isopropylmalate dehydrogenase 0.95 8
Pseudomonas sp. S08-1 0.60 OH686_10820 methylenetetrahydrofolate reductase [NAD(P)H] 0.62 OH686_04470 3-isopropylmalate dehydrogenase 0.79 10
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.78 6
Pseudomonas fluorescens SBW25 0.59 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.68 15
Rhodanobacter denitrificans MT42 0.59 LRK55_RS11765 methylenetetrahydrofolate reductase [NAD(P)H] 0.41 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Pseudomonas simiae WCS417 0.59 PS417_26510 5,10-methylenetetrahydrofolate reductase 0.64 PS417_18585 3-isopropylmalate dehydrogenase 0.42 34
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS12030 methylenetetrahydrofolate reductase [NAD(P)H] 0.41 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.72 12
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_08015 5,10-methylenetetrahydrofolate reductase 0.65 AO353_20635 3-isopropylmalate dehydrogenase 0.86 10
Pseudomonas putida KT2440 0.59 PP_4977 5,10-methylenetetrahydrofolate reductase 0.64 PP_1988 3-isopropylmalate dehydrogenase 0.45 51
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2384 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.65 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.84 21
Castellaniella sp019104865 MT123 0.58 ABCV34_RS13550 methylenetetrahydrofolate reductase [NAD(P)H] 0.75 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Lysobacter sp. OAE881 0.58 ABIE51_RS16490 methylenetetrahydrofolate reductase [NAD(P)H] 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.98 7
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_1050 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.94 5
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_11830 metF methylenetetrahydrofolate reductase [NAD(P)H] 0.42 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Pseudomonas stutzeri RCH2 0.58 Psest_0313 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.63 Psest_2589 3-isopropylmalate dehydrogenase 0.89 12
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11570 methylenetetrahydrofolate reductase [NAD(P)H] 0.40 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.96 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.63 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.64 17
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.4336.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.60 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 74
Acinetobacter radioresistens SK82 0.50 MPMX26_01002 5,10-methylenetetrahydrofolate reductase 0.59 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Serratia liquefaciens MT49 0.43 IAI46_24530 methylenetetrahydrofolate reductase 0.51 IAI46_03350 3-isopropylmalate dehydrogenase 0.72 33
Rahnella sp. WP5 0.43 EX31_RS14205 methylenetetrahydrofolate reductase 0.50 EX31_RS03685 3-isopropylmalate dehydrogenase 0.92 12
Enterobacter sp. TBS_079 0.42 MPMX20_04529 5,10-methylenetetrahydrofolate reductase 0.49 MPMX20_00768 3-isopropylmalate dehydrogenase 0.74 17
Dickeya dianthicola ME23 0.42 DZA65_RS21460 methylenetetrahydrofolate reductase 0.50 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.76 8
Dickeya dadantii 3937 0.42 DDA3937_RS00960 methylenetetrahydrofolate reductase 0.49 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Pectobacterium carotovorum WPP14 0.42 HER17_RS00950 methylenetetrahydrofolate reductase 0.49 HER17_RS03080 3-isopropylmalate dehydrogenase low > 75
Dickeya dianthicola 67-19 0.42 HGI48_RS20415 methylenetetrahydrofolate reductase 0.49 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.56 9
Enterobacter asburiae PDN3 0.42 EX28DRAFT_4413 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.53 70
Klebsiella michiganensis M5al 0.42 BWI76_RS00805 5,10-methylenetetrahydrofolate reductase 0.50 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.89 18
Pantoea sp. MT58 0.42 IAI47_00890 methylenetetrahydrofolate reductase 0.47 IAI47_16005 3-isopropylmalate dehydrogenase low > 76
Escherichia coli ECRC100 0.42 OKFHMN_13665 metF methylenetetrahydrofolate reductase 0.49 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.99 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_04109 5,10-methylenetetrahydrofolate reductase 0.49 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli ECOR38 0.42 HEPCGN_12310 metF methylenetetrahydrofolate reductase 0.49 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.92 40
Escherichia coli ECOR27 0.42 NOLOHH_05810 metF methylenetetrahydrofolate reductase 0.49 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.97 8
Escherichia coli ECRC99 0.42 KEDOAH_14495 metF methylenetetrahydrofolate reductase 0.49 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC62 0.42 BNILDI_05725 metF methylenetetrahydrofolate reductase 0.49 BNILDI_08545 leuA 2-isopropylmalate synthase 0.99 11
Escherichia coli ECRC101 0.42 MCAODC_04165 metF methylenetetrahydrofolate reductase 0.49 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.97 12
Escherichia coli ECRC98 0.42 JDDGAC_17290 metF methylenetetrahydrofolate reductase 0.49 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.99 5
Escherichia coli BL21 0.42 ECD_03827 5,10-methylenetetrahydrofolate reductase 0.49 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.97 3
Escherichia coli BW25113 0.42 b3941 metF 5,10-methylenetetrahydrofolate reductase (NCBI) 0.49 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.96 9
Escherichia coli ECRC102 0.42 NIAGMN_11420 metF methylenetetrahydrofolate reductase 0.49 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase
Escherichia fergusonii Becca 0.41 EFB2_04672 5,10-methylenetetrahydrofolate reductase 0.49 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF2329 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.50 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Escherichia coli Nissle 1917 0.41 ECOLIN_RS22760 methylenetetrahydrofolate reductase 0.49 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.94 14
Erwinia tracheiphila SCR3 0.41 LU632_RS19630 metF methylenetetrahydrofolate reductase 0.47 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase low > 74
Azospirillum brasilense Sp245 0.40 AZOBR_RS09540 5 10-methylenetetrahydrofolate reductase 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.71 17
Magnetospirillum magneticum AMB-1 0.40 AMB_RS02230 methylenetetrahydrofolate reductase 0.52 AMB_RS20570 3-isopropylmalate dehydrogenase
Rhodospirillum rubrum S1H 0.39 Rru_A1530 5,10-methylenetetrahydrofolate reductase (NCBI) 0.51 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.89 19
Azospirillum sp. SherDot2 0.39 MPMX19_00635 5,10-methylenetetrahydrofolate reductase 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase 0.95 2
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0992 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.60 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.62 61
Bosea sp. OAE506 0.38 ABIE41_RS12475 methylenetetrahydrofolate reductase [NAD(P)H] 0.51 ABIE41_RS11860 3-isopropylmalate dehydrogenase
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_13560 methylenetetrahydrofolate reductase 0.49 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Shewanella loihica PV-4 0.38 Shew_0522 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.48 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.99 6
Shewanella amazonensis SB2B 0.38 Sama_3169 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.47 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.98 9
Alteromonas macleodii MIT1002 0.37 MIT1002_03670 5,10-methylenetetrahydrofolate reductase 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase low > 70
Shewanella sp. ANA-3 0.37 Shewana3_3612 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.48 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.97 5
Shewanella oneidensis MR-1 0.36 SO4054 metF 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.48 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.98 4
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2461 5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20) 0.63 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_02224 methylenetetrahydrofolate reductase 0.48 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.36 CCNA_02224 methylenetetrahydrofolate reductase 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.96 8
Rhizobium sp. OAE497 0.35 ABIE40_RS11950 methylenetetrahydrofolate reductase [NAD(P)H] 0.52 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.98 5
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11700 5,10-methylenetetrahydrofolate reductase MetF 0.54 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.91 6
Agrobacterium fabrum C58 0.35 Atu2123 methylenetetrahydrofolate reductase 0.49 Atu2791 3-isopropylmalate dehydrogenase 0.59 15
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU0997 metF 5,10-methylenetetrahydrofolate reductase (TIGR) 0.54 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.88 7
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS07925 methylenetetrahydrofolate reductase [NAD(P)H] 0.42 A4249_RS09995 3-isopropylmalate dehydrogenase 0.99 7
Sinorhizobium meliloti 1021 0.34 SMc01843 5,10-methylenetetrahydrofolate reductase 0.50 SMc04405 3-isopropylmalate dehydrogenase 0.98 4
Rhodopseudomonas palustris CGA009 0.34 TX73_019175 methylenetetrahydrofolate reductase [NAD(P)H] 0.48 TX73_001175 3-isopropylmalate dehydrogenase
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_3034 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.57 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq)
Dinoroseobacter shibae DFL-12 0.30 Dshi_2080 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.52 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq)
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS15570 methylenetetrahydrofolate reductase [NAD(P)H] 0.39 ABI39_RS10215 3-isopropylmalate dehydrogenase low > 72
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS01490 methylenetetrahydrofolate reductase [NAD(P)H] 0.39 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_3637 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.44 Echvi_2062 3-isopropylmalate dehydrogenase
Pedobacter sp. GW460-11-11-14-LB5 0.22 CA265_RS23445 methylenetetrahydrofolate reductase [NAD(P)H] 0.48 CA265_RS15850 3-isopropylmalate dehydrogenase 0.94 28
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_16780 methylenetetrahydrofolate reductase [NAD(P)H] 0.43 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Bacteroides thetaiotaomicron VPI-5482 0.21 BT3821 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.39 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS00120 methylenetetrahydrofolate reductase [NAD(P)H] 0.39 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS20935 methylenetetrahydrofolate reductase [NAD(P)H] 0.47 ABZR88_RS11605 3-isopropylmalate dehydrogenase
Parabacteroides merdae CL09T00C40 0.20 HMPREF1078_RS07860 methylenetetrahydrofolate reductase [NAD(P)H] 0.40 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase low > 61
Bacteroides ovatus ATCC 8483 0.17 BACOVA_03666 methylenetetrahydrofolate reductase (NAD(P)H) 0.39 BACOVA_04600 3-isopropylmalate dehydrogenase low > 94

Not shown: 2 genomes with orthologs for BPHYT_RS18705 only; 2 genomes with orthologs for BPHYT_RS33900 only