| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS14125 | | transcriptional regulator | 1.0 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.31 | 7 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.99 | H281DRAFT_04415 | | phosphate uptake regulator, PhoU | 0.86 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.99 | ABIE53_002991 | | phosphate transport system protein | 0.86 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.93 | QEN71_RS04840 | | phosphate signaling complex protein PhoU | 0.77 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.80 | RR42_RS13450 | | PhoU family transcriptional regulator | 0.57 | RR42_RS17590 | | 16S rRNA methyltransferase | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.75 | RPSI07_RS15315 | | phosphate transport system regulatory protein PhoU | 0.44 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.74 | ABZR87_RS14080 | | phosphate signaling complex protein PhoU | 0.46 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.74 | RS_RS07690 | | phosphate transport system regulatory protein PhoU | 0.43 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.74 | RALBFv3_RS02130 | | phosphate transport system regulatory protein PhoU | 0.46 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.74 | UW163_RS15440 | | phosphate transport system regulatory protein PhoU | 0.46 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Variovorax sp. SCN45 | 0.64 | GFF1096 | | Phosphate transport system regulatory protein PhoU | 0.40 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.62 | Ac3H11_460 | | Phosphate transport system regulatory protein PhoU | 0.38 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.58 | GFF4234 | | Phosphate transport system regulatory protein PhoU | 0.39 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 90 |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_0894 | | phosphate uptake regulator, PhoU | 0.37 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | low | > 40 |
| Dechlorosoma suillum PS | 0.48 | Dsui_1573 | | phosphate transport system regulatory protein PhoU | 0.40 | Dsui_1568 | | RNA methyltransferase, RsmE family | — | — |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS02395 | | phosphate signaling complex protein PhoU | 0.34 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.48 | Psyr_5037 | | phosphate uptake regulator, PhoU | 0.34 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.48 | Psyr_5037 | | phosphate uptake regulator, PhoU | 0.34 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | — | — |
| Pseudomonas sp. S08-1 | 0.48 | OH686_13430 | | phosphate transport system regulatory protein PhoU | 0.34 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_0223 | | phosphate transport system regulatory protein PhoU | 0.33 | Psest_0305 | | RNA methyltransferase, RsmE family | — | — |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | 0.33 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Pseudomonas putida KT2440 | 0.47 | PP_5325 | | phosphate transport-associated protein | 0.35 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS06330 | | transcriptional regulator | 0.46 | HSERO_RS07110 | | 16S rRNA methyltransferase | low | > 78 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_28065 | | transcriptional regulator PhoU | 0.33 | PS417_26545 | | 16S rRNA methyltransferase | — | — |
| Shewanella amazonensis SB2B | 0.47 | Sama_1411 | | transcriptional regulator PhoU (RefSeq) | 0.37 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_757 | | Phosphate transport system regulatory protein PhoU | 0.33 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | 0.33 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_11025 | | transcriptional regulator PhoU | 0.33 | AO356_13565 | | 16S rRNA methyltransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_2038 | | Phosphate transport system regulatory protein PhoU | 0.33 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_09885 | | transcriptional regulator PhoU | 0.33 | AO353_08050 | | 16S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_4071 | | Phosphate transport system regulatory protein PhoU | 0.33 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 103 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_04485 | | Phosphate-specific transport system accessory protein PhoU | 0.32 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | low | > 88 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_2731 | | transcriptional regulator PhoU (RefSeq) | 0.35 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.46 | SO1726 | phoU | phosphate transport system regulatory protein PhoU (NCBI ptt file) | 0.35 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | — | — |
| Shewanella loihica PV-4 | 0.46 | Shew_1701 | | transcriptional regulator PhoU (RefSeq) | 0.34 | Shew_3224 | | hypothetical protein (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.45 | EX31_RS06050 | | phosphate signaling complex protein PhoU | 0.37 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS24900 | phoU | phosphate signaling complex protein PhoU | 0.37 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_03800 | | phosphate transport system regulator PhoU | 0.33 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS21695 | | phosphate signaling complex protein PhoU | 0.32 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Pantoea sp. MT58 | 0.45 | IAI47_00215 | | phosphate signaling complex protein PhoU | 0.35 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Dickeya dianthicola ME23 | 0.44 | DZA65_RS22560 | | phosphate signaling complex protein PhoU | 0.35 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Dickeya dianthicola 67-19 | 0.44 | HGI48_RS21580 | | phosphate signaling complex protein PhoU | 0.35 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Serratia liquefaciens MT49 | 0.44 | IAI46_25195 | | phosphate signaling complex protein PhoU | 0.36 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 86 |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_13610 | phoU | phosphate signaling complex protein PhoU | 0.36 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | — | — |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS21450 | | phosphate signaling complex protein PhoU | 0.36 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_13250 | phoU | phosphate signaling complex protein PhoU | 0.36 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Marinobacter adhaerens HP15 | 0.43 | HP15_3385 | | phosphate uptake regulator, PhoU | 0.37 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | — | — |
| Escherichia coli BL21 | 0.43 | ECD_03608 | | negative regulator of PhoR/PhoB two-component regulator | 0.36 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_04495 | pstA | phosphate ABC transporter permease PstA | 0.36 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_05405 | phoU | phosphate signaling complex protein PhoU | 0.36 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_04329 | | Phosphate-specific transport system accessory protein PhoU | 0.36 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | — | — |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS21430 | | phosphate signaling complex protein PhoU | 0.36 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC100 | 0.43 | OKFHMN_14900 | phoU | phosphate signaling complex protein PhoU | 0.36 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_12655 | phoU | phosphate signaling complex protein PhoU | 0.36 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli BW25113 | 0.43 | b3724 | phoU | negative regulator of PhoR/PhoB two-component regulator (NCBI) | 0.36 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_04909 | | Phosphate-specific transport system accessory protein PhoU | 0.36 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_18520 | phoU | phosphate signaling complex protein PhoU | 0.36 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_07030 | pstA | phosphate ABC transporter permease PstA | 0.36 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS00140 | | phosphate transport system regulator PhoU | 0.33 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF1738 | | Phosphate transport system regulatory protein PhoU | 0.34 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_4000 | | phosphate transport system regulatory protein PhoU | 0.34 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | — | — |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_04643 | | Phosphate-specific transport system accessory protein PhoU | 0.34 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | — | — |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_00183 | | Phosphate-specific transport system accessory protein PhoU | 0.34 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00877 | | Repressor protein PhoU | 0.36 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | low | > 70 |
| Dinoroseobacter shibae DFL-12 | 0.33 | Dshi_1537 | | phosphate uptake regulator, PhoU (RefSeq) | 0.17 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c15740 | | phosphate transport system protein PhoU | 0.19 | PGA1_c02950 | | RNA methyltransferase-like protein | low | > 62 |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A0602 | | Phosphate uptake regulator, PhoU (NCBI) | 0.14 | Rru_A0571 | | hypothetical protein (NCBI) | 0.78 | 3 |
| Rhodopseudomonas palustris CGA009 | 0.31 | TX73_024825 | | phosphate signaling complex protein PhoU | 0.16 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_04813 | | Phosphate-specific transport system accessory protein PhoU | 0.17 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | low | > 112 |
| Rhizobium sp. OAE497 | 0.30 | ABIE40_RS02305 | | phosphate signaling complex protein PhoU | 0.15 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.30 | SMc02141 | | phosphate transporter PhoU | 0.16 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | low | > 103 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS08185 | | PhoU family transcriptional regulator | 0.15 | AZOBR_RS11890 | | 16S rRNA methyltransferase | low | > 97 |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS08905 | | phosphate signaling complex protein PhoU | 0.16 | ABIE41_RS23100 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | 35 |
| Agrobacterium fabrum C58 | 0.29 | Atu0424 | | phosphate transport system regulatory protein | 0.16 | Atu0657 | | hypothetical protein | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.29 | A4249_RS08975 | | phosphate signaling complex protein PhoU | 0.15 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Caulobacter crescentus NA1000 | 0.29 | CCNA_00295 | | phosphate transport system protein phoU | 0.16 | CCNA_03528 | | RNA methyltransferase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.29 | CCNA_00295 | | phosphate transport system protein phoU | 0.16 | CCNA_03528 | | RNA methyltransferase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_3652 | | phosphate transport system regulatory protein PhoU | 0.19 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | low | > 68 |
| Rhodanobacter sp. FW510-T8 | 0.28 | OKGIIK_06835 | phoU | phosphate signaling complex protein PhoU | 0.33 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS06940 | | phosphate transport system regulatory protein PhoU | 0.14 | AMB_RS01240 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 64 |
| Dyella japonica UNC79MFTsu3.2 | 0.28 | ABZR86_RS08250 | | phosphate signaling complex protein PhoU | 0.36 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.27 | LRK54_RS00475 | | phosphate signaling complex protein PhoU | 0.37 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS00215 | | phosphate signaling complex protein PhoU | 0.36 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.25 | Xcc-8004.3364.1 | | Phosphate transport system regulatory protein PhoU | 0.34 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS07525 | | phosphate signaling complex protein PhoU | 0.33 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 62 |
| Desulfovibrio vulgaris Miyazaki F | 0.24 | DvMF_0880 | | phosphate uptake regulator, PhoU (RefSeq) | 0.14 | DvMF_0340 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.23 | DVU1085 | phoU | phosphate transport system protein PhoU (TIGR) | 0.11 | DVU1685 | | conserved hypothetical protein TIGR00046 (TIGR) | low | > 55 |
| Parabacteroides merdae CL09T00C40 | 0.22 | HMPREF1078_RS17190 | | phosphate signaling complex protein PhoU | 0.15 | HMPREF1078_RS10135 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 61 |
| Bacteroides ovatus ATCC 8483 | 0.21 | BACOVA_00605 | | phosphate transport system regulatory protein PhoU | 0.15 | BACOVA_05130 | | RNA methyltransferase, RsmE family | low | > 94 |
| Bacteroides stercoris CC31F | 0.20 | HMPREF1181_RS10820 | | phosphate signaling complex protein PhoU | 0.13 | HMPREF1181_RS05940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 56 |
| Synechococcus elongatus PCC 7942 | 0.16 | Synpcc7942_1912 | phoU | phosphate uptake regulator, PhoU | 0.18 | Synpcc7942_0806 | | hypothetical protein | — | — |
| Mycobacterium tuberculosis H37Rv | 0.15 | Rv0821c | | Probable phosphate-transport system transcriptional regulatory protein PhoY2 | 0.12 | Rv2372c | | Conserved hypothetical protein | low | > 58 |
| Bifidobacterium breve UCC2003 | 0.15 | BBR_RS18585 | | phosphate transport system regulatory protein PhoU | 0.15 | BBR_RS15150 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
Not shown: 6 genomes with orthologs for BPHYT_RS14125 only; 3 genomes with orthologs for BPHYT_RS16855 only