| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu2747 | | hypothetical protein | 1.0 | Atu2791 | | 3-isopropylmalate dehydrogenase | 0.89 | 7 |
| Sinorhizobium meliloti 1021 | 0.77 | SMc02812 | | hypothetical protein | 0.90 | SMc04405 | | 3-isopropylmalate dehydrogenase | 0.55 | 5 |
| Rhizobium sp. OAE497 | 0.76 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | 0.89 | ABIE40_RS19050 | | 3-isopropylmalate dehydrogenase | — | — |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS01870 | | alanine racemase | 0.63 | AZOBR_RS14130 | | 3-isopropylmalate dehydrogenase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.61 | AMB_RS00120 | | YggS family pyridoxal phosphate-dependent enzyme | 0.55 | AMB_RS20570 | | 3-isopropylmalate dehydrogenase | — | — |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.64 | MPMX19_00607 | | 3-isopropylmalate dehydrogenase | low | > 112 |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_001485 | | YggS family pyridoxal phosphate-dependent enzyme | 0.72 | TX73_001175 | | 3-isopropylmalate dehydrogenase | — | — |
| Bosea sp. OAE506 | 0.58 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | 0.69 | ABIE41_RS11860 | | 3-isopropylmalate dehydrogenase | — | — |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A3634 | | Protein of unknown function UPF0001 (NCBI) | 0.57 | Rru_A1191 | | 3-isopropylmalate dehydrogenase (NCBI) | low | > 58 |
| Dinoroseobacter shibae DFL-12 | 0.53 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.61 | Dshi_0081 | | 3-isopropylmalate dehydrogenase (RefSeq) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.53 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | 0.40 | A4249_RS09995 | | 3-isopropylmalate dehydrogenase | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS20395 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | RS_RS09990 | | 3-isopropylmalate dehydrogenase | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.53 | PGA1_c33360 | | putative alanine racemase | 0.57 | PGA1_c29830 | | 3-isopropylmalate dehydrogenase LeuB | low | > 62 |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.56 | CCNA_00193 | | 3-isopropylmalate dehydrogenase | 0.58 | 50 |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.56 | CCNA_00193 | | 3-isopropylmalate dehydrogenase | low | > 67 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS02580 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | RPSI07_RS14705 | | 3-isopropylmalate dehydrogenase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS20285 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | RALBFv3_RS02610 | | 3-isopropylmalate dehydrogenase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS18890 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | UW163_RS11115 | | 3-isopropylmalate dehydrogenase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.49 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | 0.43 | Ga0059261_3190 | | 3-isopropylmalate dehydrogenase | low | > 68 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS03335 | | YggS family pyridoxal phosphate-dependent enzyme | 0.43 | DZA65_RS19205 | | 3-isopropylmalate dehydrogenase | low | > 75 |
| Shewanella loihica PV-4 | 0.37 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | 0.38 | Shew_3471 | | 3-isopropylmalate dehydrogenase (RefSeq) | low | > 60 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS18995 | | hypothetical protein | 0.48 | HSERO_RS16500 | | 3-isopropylmalate dehydrogenase | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.47 | QEN71_RS17620 | | 3-isopropylmalate dehydrogenase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS03495 | | hypothetical protein | 0.47 | BPHYT_RS33900 | | 3-isopropylmalate dehydrogenase | 0.70 | 10 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | 0.47 | ABIE53_004804 | | 3-isopropylmalate dehydrogenase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_04680 | | hypothetical protein | 0.47 | H281DRAFT_06072 | | 3-isopropylmalate dehydrogenase | low | > 103 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_1194 | | hypothetical protein (RefSeq) | 0.39 | Shewana3_3760 | | 3-isopropylmalate dehydrogenase (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.34 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.43 | CSW01_12600 | | 3-isopropylmalate dehydrogenase | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | ABZR87_RS14530 | | 3-isopropylmalate dehydrogenase | low | > 80 |
| Dickeya dadantii 3937 | 0.33 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | DDA3937_RS18120 | | 3-isopropylmalate dehydrogenase | 0.67 | 5 |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.39 | MIT1002_00948 | | 3-isopropylmalate dehydrogenase | low | > 70 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | ABCV34_RS04280 | | 3-isopropylmalate dehydrogenase | low | > 48 |
| Shewanella amazonensis SB2B | 0.33 | Sama_2477 | | hypothetical protein (RefSeq) | 0.38 | Sama_0336 | | 3-isopropylmalate dehydrogenase (RefSeq) | low | > 62 |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.44 | EX28DRAFT_3669 | | 3-isopropylmalate dehydrogenase | low | > 76 |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | ABID97_RS08455 | | 3-isopropylmalate dehydrogenase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.48 | GFF3360 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | low | > 90 |
| Shewanella oneidensis MR-1 | 0.32 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | 0.39 | SO4235 | leuB | 3-isopropylmalate dehydrogenase (NCBI ptt file) | low | > 76 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | 0.37 | LRK54_RS10325 | | 3-isopropylmalate dehydrogenase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | 0.37 | LRK55_RS09965 | | 3-isopropylmalate dehydrogenase | low | > 63 |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | 0.53 | B158DRAFT_1322 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | low | > 40 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_10505 | | hypothetical protein | 0.55 | AO353_20635 | | 3-isopropylmalate dehydrogenase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.55 | Psyr_1985 | | 3-isopropylmalate dehydrogenase | 0.46 | 23 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.55 | Psyr_1985 | | 3-isopropylmalate dehydrogenase | 0.47 | 79 |
| Lysobacter sp. OAE881 | 0.31 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | ABIE51_RS17585 | | 3-isopropylmalate dehydrogenase | low | > 62 |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.44 | BWI76_RS04675 | | 3-isopropylmalate dehydrogenase | low | > 92 |
| Variovorax sp. SCN45 | 0.31 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | 0.48 | GFF3888 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | — | — |
| Dickeya dianthicola 67-19 | 0.31 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.43 | HGI48_RS18060 | | 3-isopropylmalate dehydrogenase | low | > 71 |
| Pseudomonas sp. S08-1 | 0.30 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | 0.53 | OH686_04470 | | 3-isopropylmalate dehydrogenase | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.43 | HER17_RS03080 | | 3-isopropylmalate dehydrogenase | 0.66 | 73 |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.44 | MPMX20_00768 | | 3-isopropylmalate dehydrogenase | low | > 85 |
| Escherichia fergusonii Becca | 0.30 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.44 | EFB2_03972 | | 3-isopropylmalate dehydrogenase | low | > 86 |
| Escherichia coli BL21 | 0.30 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.44 | ECD_00075 | | 3-isopropylmalate dehydrogenase, NAD(+)-dependent | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.44 | OHPLBJKB_03584 | | 3-isopropylmalate dehydrogenase | low | > 73 |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | HEPCGN_08700 | leuB | 3-isopropylmalate dehydrogenase | low | > 85 |
| Escherichia coli ECOR27 | 0.30 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | NOLOHH_03065 | leuA | 2-isopropylmalate synthase | low | > 57 |
| Escherichia coli BW25113 | 0.30 | b2951 | yggS | predicted enzyme (NCBI) | 0.44 | b0073 | leuB | 3-isopropylmalate dehydrogenase (VIMSS) | low | > 76 |
| Escherichia coli ECRC101 | 0.30 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | MCAODC_01235 | leuB | 3-isopropylmalate dehydrogenase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.30 | DVU0051 | | conserved hypothetical protein TIGR00044 (TIGR) | 0.45 | DVU2985 | leuB | 3-isopropylmalate dehydrogenase (TIGR) | low | > 55 |
| Escherichia coli ECRC102 | 0.30 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | NIAGMN_08570 | leuB | 3-isopropylmalate dehydrogenase | — | — |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.44 | ECOLIN_RS00395 | | 3-isopropylmalate dehydrogenase | low | > 52 |
| Escherichia coli ECRC62 | 0.30 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | BNILDI_08545 | leuA | 2-isopropylmalate synthase | — | — |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | JDDGAC_14315 | leuB | 3-isopropylmalate dehydrogenase | — | — |
| Escherichia coli ECRC101 | 0.30 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | OKFHMN_10720 | leuB | 3-isopropylmalate dehydrogenase | — | — |
| Escherichia coli ECRC99 | 0.30 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.44 | KEDOAH_17435 | leuB | 3-isopropylmalate dehydrogenase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.30 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.44 | GFF165 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | low | > 78 |
| Dechlorosoma suillum PS | 0.30 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | 0.52 | Dsui_3198 | | 3-isopropylmalate dehydrogenase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | 0.35 | ABZR86_RS15950 | | 3-isopropylmalate dehydrogenase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.29 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | 0.39 | OKGIIK_13595 | leuB | 3-isopropylmalate dehydrogenase | low | > 52 |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.54 | Psest_2589 | | 3-isopropylmalate dehydrogenase | 0.52 | 13 |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.47 | Ac3H11_1528 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | low | > 79 |
| Rahnella sp. WP5 | 0.29 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | EX31_RS03685 | | 3-isopropylmalate dehydrogenase | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_13425 | | hypothetical protein | 0.56 | AO356_21415 | | 3-isopropylmalate dehydrogenase | low | > 104 |
| Pantoea sp. MT58 | 0.29 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.41 | IAI47_16005 | | 3-isopropylmalate dehydrogenase | 0.66 | 6 |
| Pseudomonas putida KT2440 | 0.28 | PP_5094 | | putative enzyme with PLP binding domain | 0.55 | PP_1988 | | 3-isopropylmalate dehydrogenase | low | > 96 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_26725 | | hypothetical protein | 0.57 | PS417_18585 | | 3-isopropylmalate dehydrogenase | 0.32 | 29 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS17355 | | hypothetical protein | 0.48 | RR42_RS14385 | | 3-isopropylmalate dehydrogenase | low | > 128 |
| Erwinia tracheiphila SCR3 | 0.28 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.41 | LU632_RS02875 | leuB | 3-isopropylmalate dehydrogenase | low | > 74 |
| Pseudomonas fluorescens GW456-L13 | 0.27 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.54 | PfGW456L13_3945 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | 0.35 | 28 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.57 | PFLU_RS20565 | | 3-isopropylmalate dehydrogenase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.57 | PFLU_RS20565 | | 3-isopropylmalate dehydrogenase | low | > 109 |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | 0.54 | MPMX26_00348 | | 3-isopropylmalate dehydrogenase | low | > 36 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.56 | Pf6N2E2_66 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | 0.23 | 98 |
| Desulfovibrio vulgaris Miyazaki F | 0.27 | DvMF_2208 | | alanine racemase domain protein (RefSeq) | 0.46 | DvMF_1794 | | 3-isopropylmalate dehydrogenase (RefSeq) | low | > 51 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.56 | PFR28_02821 | | 3-isopropylmalate dehydrogenase | low | > 88 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_288 | | alanine racemase domain protein | 0.54 | HP15_1832 | | 3-isopropylmalate dehydrogenase | low | > 73 |
| Synechococcus elongatus PCC 7942 | 0.26 | Synpcc7942_2060 | ylmE | hypothetical protein | 0.45 | Synpcc7942_1505 | leuB | 3-isopropylmalate dehydrogenase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | HMPREF1078_RS16640 | | 3-isopropylmalate dehydrogenase | low | > 61 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.25 | ABZR88_RS11740 | | YggS family pyridoxal phosphate-dependent enzyme | 0.41 | ABZR88_RS11605 | | 3-isopropylmalate dehydrogenase | — | — |
| Serratia liquefaciens MT49 | 0.25 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | 0.43 | IAI46_03350 | | 3-isopropylmalate dehydrogenase | low | > 86 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.25 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | 0.32 | BT1857 | | 3-isopropylmalate dehydrogenase (NCBI ptt file) | 0.27 | 21 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.25 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.52 | Xcc-8004.1053.1 | | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | 0.38 | Echvi_2062 | | 3-isopropylmalate dehydrogenase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | 0.32 | BACOVA_04600 | | 3-isopropylmalate dehydrogenase | low | > 94 |
| Bacteroides stercoris CC31F | 0.23 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | HMPREF1181_RS14125 | | 3-isopropylmalate dehydrogenase | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.23 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | 0.35 | CA264_09445 | | 3-isopropylmalate dehydrogenase | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.23 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | 0.40 | CA265_RS15850 | | 3-isopropylmalate dehydrogenase | 0.27 | 82 |
| Phocaeicola dorei CL03T12C01 | 0.21 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | ABI39_RS10215 | | 3-isopropylmalate dehydrogenase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | HMPREF1058_RS14565 | | 3-isopropylmalate dehydrogenase | low | > 67 |
Not shown: 3 genomes with orthologs for Atu2747 only; 1 genomes with orthologs for Atu2791 only