Conservation of cofitness between Atu2831 and Atu0368 in Agrobacterium fabrum C58

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2831 glucose inhibited division protein A 1.0 Atu0368 tRNA pseudouridine synthase I 0.67 2
Sinorhizobium meliloti 1021 0.71 SMc02798 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 0.74 SMc01099 tRNA pseudouridine synthase A — —
Caulobacter crescentus NA1000 0.58 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.51 CCNA_00280 tRNA pseudouridine synthase A 0.46 26
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.51 CCNA_00280 tRNA pseudouridine synthase A low > 67
Bosea sp. OAE506 0.58 ABIE41_RS04685 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.47 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA — —
Rhodopseudomonas palustris CGA009 0.58 TX73_001530 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.50 TX73_003225 tRNA pseudouridine(38-40) synthase TruA low > 86
Magnetospirillum magneticum AMB-1 0.57 AMB_RS00010 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.51 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA low > 64
Azospirillum sp. SherDot2 0.56 MPMX19_02569 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.53 MPMX19_02005 tRNA pseudouridine synthase A — —
Azospirillum brasilense Sp245 0.56 AZOBR_RS01810 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.52 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Brevundimonas sp. GW460-12-10-14-LB2 0.55 A4249_RS13705 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.46 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Phaeobacter inhibens DSM 17395 0.54 PGA1_c35100 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.47 PGA1_c05650 tRNA pseudouridine synthase A — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_3455 glucose inhibited division protein A (RefSeq) 0.48 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) — —
Rhodospirillum rubrum S1H 0.53 Rru_A3625 Glucose-inhibited division protein A subfamily (NCBI) 0.50 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Alteromonas macleodii MIT1002 0.47 MIT1002_04124 Glucose-inhibited division protein A 0.33 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Kangiella aquimarina DSM 16071 0.47 B158DRAFT_0377 glucose-inhibited division protein A 0.30 B158DRAFT_1483 pseudouridylate synthase I low > 40
Escherichia coli BL21 0.47 ECD_03625 5-methylaminomethyl-2-thiouridine modification at tRNA U34 0.32 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Marinobacter adhaerens HP15 0.47 HP15_3690 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.33 HP15_1829 tRNA pseudouridine synthase A — —
Dickeya dianthicola 67-19 0.47 HGI48_RS21380 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Escherichia fergusonii Becca 0.47 EFB2_04892 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.31 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli Nissle 1917 0.47 ECOLIN_RS21515 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia coli ECOR38 0.47 HEPCGN_13500 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia coli ECOR27 0.47 NOLOHH_06920 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC62 0.47 BNILDI_04605 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_04312 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.32 OHPLBJKB_01387 tRNA pseudouridine synthase A — —
Escherichia coli BW25113 0.47 b3741 gidA glucose-inhibited division protein A (NCBI) 0.31 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.50 8
Escherichia coli ECRC101 0.46 MCAODC_05290 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC102 0.46 NIAGMN_12540 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.46 JDDGAC_18405 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC99 0.46 KEDOAH_13365 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.46 OKFHMN_14785 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Dickeya dianthicola ME23 0.46 DZA65_RS22360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Rahnella sp. WP5 0.46 EX31_RS06140 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.30 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.78 4
Dickeya dadantii 3937 0.46 DDA3937_RS21605 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.32 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.59 41
Klebsiella michiganensis M5al 0.46 BWI76_RS00230 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.31 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF1716 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.31 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.88 2
Pseudomonas fluorescens SBW25 0.46 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas putida KT2440 0.46 PP_0004 tRNA uridine 5-carboxymethylaminomethyl modification enzyme 0.32 PP_1994 tRNA pseudouridine (38-40)synthase — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA — —
Serratia liquefaciens MT49 0.46 IAI46_25110 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.31 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Enterobacter sp. TBS_079 0.46 MPMX20_04626 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.31 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Pseudomonas sp. S08-1 0.46 OH686_12660 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.34 OH686_04450 tRNA pseudouridine(38-40) synthase — —
Pseudomonas simiae WCS417 0.46 PS417_28520 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.30 PS417_18565 pseudouridine synthase — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS21600 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.31 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Enterobacter asburiae PDN3 0.46 EX28DRAFT_4017 glucose-inhibited division protein A 0.32 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_5132 Glucose-inhibited division protein A subfamily 0.31 Psyr_1662 tRNA pseudouridine synthase 0.37 9
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_5132 Glucose-inhibited division protein A subfamily 0.31 Psyr_1662 tRNA pseudouridine synthase 0.39 4
Lysobacter sp. OAE881 0.46 ABIE51_RS01205 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.31 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_11665 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.31 AO356_21435 pseudouridine synthase — —
Pseudomonas sp. RS175 0.46 PFR28_04587 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.31 PFR28_02817 tRNA pseudouridine synthase A — —
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_4203 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.31 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Shewanella loihica PV-4 0.46 Shew_3856 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.31 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS29345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.33 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA — —
Shewanella sp. ANA-3 0.45 Shewana3_0002 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.31 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.51 57
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_10445 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.31 AO353_20660 pseudouridine synthase low > 101
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.488.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.30 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1934 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.31 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS15760 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.27 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.52 33
Dechlorosoma suillum PS 0.45 Dsui_0846 glucose-inhibited division protein A 0.34 Dsui_3194 pseudouridylate synthase I 0.77 3
Variovorax sp. OAS795 0.45 ABID97_RS02905 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.29 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_14055 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.33 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Pseudomonas stutzeri RCH2 0.45 Psest_4365 glucose-inhibited division protein A 0.30 Psest_2585 pseudouridylate synthase I — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS09830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.26 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_671 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.31 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Shewanella amazonensis SB2B 0.45 Sama_3655 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.34 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) — —
Erwinia tracheiphila SCR3 0.45 LU632_RS24815 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.30 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS10190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.26 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.51 47
Paraburkholderia graminis OAS925 0.45 ABIE53_000264 tRNA uridine 5-carboxymethylaminomethyl modification enzyme 0.32 ABIE53_004807 tRNA pseudouridine38-40 synthase — —
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS23965 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.32 HSERO_RS16485 tRNA pseudouridine synthase A — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02385 tRNA uridine 5-carboxymethylaminomethyl modification enzyme 0.32 H281DRAFT_06069 tRNA pseudouridine38-40 synthase — —
Ralstonia solanacearum UW163 0.45 UW163_RS04745 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.35 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS08865 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.35 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Variovorax sp. SCN45 0.45 GFF3336 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG 0.30 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) — —
Pantoea sp. MT58 0.45 IAI47_00300 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.28 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.20 72
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF2018 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.28 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.59 63
Acinetobacter radioresistens SK82 0.45 MPMX26_01147 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.29 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Acidovorax sp. GW101-3H11 0.45 Ac3H11_4956 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.30 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.69 2
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS19440 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.32 BPHYT_RS33885 tRNA pseudouridine synthase A — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS08410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.34 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum GMI1000 0.44 RS_RS16675 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.35 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS04125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.34 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_2205 glucose-inhibited division protein A 0.46 Ga0059261_0647 tRNA pseudouridine(38-40) synthase low > 68
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_13725 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.25 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS20215 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.31 RR42_RS14370 tRNA pseudouridine synthase A — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS11725 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.33 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA — —
Desulfovibrio vulgaris Miyazaki F 0.42 DvMF_0551 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.19 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU1828 gidA glucose inhibited division protein A (TIGR) 0.23 DVU0911 truA tRNA pseudouridine synthase A (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_1059 glucose-inhibited division protein A 0.23 Echvi_1728 pseudouridylate synthase I — —
Fusobacterium nucleatum SB010 0.40 HUW76_10170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.21 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS20615 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA — —
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS21200 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.24 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT3268 glucose-inhibited division protein A (NCBI ptt file) 0.25 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS02105 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.23 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA low > 56
Bacteroides ovatus ATCC 8483 0.38 BACOVA_01367 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.26 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Phocaeicola vulgatus CL09T03C04 0.38 HMPREF1058_RS11535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.26 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA low > 67
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_2423 gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.23 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS05405 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.27 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.48 46
Parabacteroides merdae CL09T00C40 0.38 HMPREF1078_RS06305 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.25 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_17285 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.24 CA264_17725 tRNA pseudouridine synthase A — —

Not shown: 1 genomes with orthologs for Atu2831 only; 3 genomes with orthologs for Atu0368 only