Conservation of cofitness between Atu1677 and Atu0368 in Agrobacterium fabrum C58

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu1677 queuine tRNA-ribosyltransferase 1.0 Atu0368 tRNA pseudouridine synthase I 0.51 2
Rhizobium sp. OAE497 0.90 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.78 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA low > 107
Sinorhizobium meliloti 1021 0.84 SMc01206 queuine tRNA-ribosyltransferase 0.74 SMc01099 tRNA pseudouridine synthase A low > 103
Bosea sp. OAE506 0.70 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.47 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA low > 77
Dinoroseobacter shibae DFL-12 0.64 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.48 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.64 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.50 TX73_003225 tRNA pseudouridine(38-40) synthase TruA 0.37 34
Phaeobacter inhibens DSM 17395 0.63 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.47 PGA1_c05650 tRNA pseudouridine synthase A low > 62
Rhodospirillum rubrum S1H 0.61 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) 0.50 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.60 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt 0.51 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA low > 64
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_01659 queuine tRNA-ribosyltransferase 0.51 CCNA_00280 tRNA pseudouridine synthase A low > 67
Caulobacter crescentus NA1000 0.58 CCNA_01659 queuine tRNA-ribosyltransferase 0.51 CCNA_00280 tRNA pseudouridine synthase A low > 66
Azospirillum sp. SherDot2 0.58 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.53 MPMX19_02005 tRNA pseudouridine synthase A — —
Azospirillum brasilense Sp245 0.57 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.52 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.46 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_1017 tRNA-guanine transglycosylase 0.46 Ga0059261_0647 tRNA pseudouridine(38-40) synthase low > 68
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.30 B158DRAFT_1483 pseudouridylate synthase I low > 40
Dickeya dianthicola ME23 0.51 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.32 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.32 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Dickeya dadantii 3937 0.51 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.32 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.25 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.33 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.27 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.32 HSERO_RS16485 tRNA pseudouridine synthase A 0.27 71
Alteromonas macleodii MIT1002 0.50 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.33 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Pseudomonas stutzeri RCH2 0.50 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.30 Psest_2585 pseudouridylate synthase I low > 67
Serratia liquefaciens MT49 0.50 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.31 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Pectobacterium carotovorum WPP14 0.50 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.31 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Rhodanobacter denitrificans MT42 0.50 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.26 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Marinobacter adhaerens HP15 0.50 HP15_1479 queuine tRNA-ribosyltransferase 0.33 HP15_1829 tRNA pseudouridine synthase A low > 73
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.26 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Rahnella sp. WP5 0.50 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.30 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.51 12
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.32 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.31 MPMX20_03253 tRNA pseudouridine synthase A 0.33 82
Klebsiella michiganensis M5al 0.49 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.31 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.49 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.31 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Pantoea sp. MT58 0.49 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.28 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Shewanella sp. ANA-3 0.49 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.31 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.75 2
Shewanella amazonensis SB2B 0.49 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.34 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Lysobacter sp. OAE881 0.49 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.31 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Fusobacterium nucleatum SB010 0.49 HUW76_09025 tRNA guanosine(34) transglycosylase Tgt 0.21 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA low > 35
Pseudomonas sp. S08-1 0.49 OH686_17430 tRNA-guanine transglycosylase 0.34 OH686_04450 tRNA pseudouridine(38-40) synthase 0.81 28
Shewanella loihica PV-4 0.49 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.31 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS17400 queuine tRNA-ribosyltransferase 0.31 RR42_RS14370 tRNA pseudouridine synthase A — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.32 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA — —
Desulfovibrio vulgaris Miyazaki F 0.49 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.19 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) low > 51
Escherichia coli BL21 0.49 ECD_00354 tRNA-guanine transglycosylase 0.32 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECOR27 0.49 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 57
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_1228 tRNA-guanine transglycosylase 0.31 Psyr_1662 tRNA pseudouridine synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.30 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Escherichia coli ECRC98 0.49 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_1228 tRNA-guanine transglycosylase 0.31 Psyr_1662 tRNA pseudouridine synthase — —
Erwinia tracheiphila SCR3 0.49 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC101 0.49 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC99 0.49 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.49 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC102 0.49 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BW25113 0.49 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.31 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli ECRC62 0.49 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.32 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli ECOR38 0.49 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.32 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia fergusonii Becca 0.49 EFB2_03651 Queuine tRNA-ribosyltransferase 0.31 EFB2_01540 tRNA pseudouridine synthase A low > 86
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.31 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.40 85
Pseudomonas putida KT2440 0.48 PP_0833 queuine tRNA-ribosyltransferase 0.32 PP_1994 tRNA pseudouridine (38-40)synthase 0.32 23
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.31 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.27 103
Acinetobacter radioresistens SK82 0.48 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.29 MPMX26_00352 tRNA pseudouridine synthase A 0.76 11
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.31 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.55 13
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_06690 queuine tRNA-ribosyltransferase 0.31 AO356_21435 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_15790 queuine tRNA-ribosyltransferase 0.31 AO353_20660 pseudouridine synthase — —
Pseudomonas sp. RS175 0.48 PFR28_00277 Queuine tRNA-ribosyltransferase 0.31 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas simiae WCS417 0.48 PS417_23245 queuine tRNA-ribosyltransferase 0.30 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.48 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Desulfovibrio vulgaris Hildenborough JW710 0.48 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.23 DVU0911 truA tRNA pseudouridine synthase A (TIGR) low > 55
Dechlorosoma suillum PS 0.47 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.34 Dsui_3194 pseudouridylate synthase I low > 51
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04670 tRNA-guanine transglycosylase 0.32 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.32 BPHYT_RS33885 tRNA pseudouridine synthase A low > 109
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.33 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Acidovorax sp. GW101-3H11 0.47 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.30 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Castellaniella sp019104865 MT123 0.47 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.33 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Synechococcus elongatus PCC 7942 0.46 Synpcc7942_0455 tgt queuine tRNA-ribosyltransferase 0.23 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.28 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.34 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia solanacearum GMI1000 0.46 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.35 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.39 52
Variovorax sp. OAS795 0.45 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.29 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Variovorax sp. SCN45 0.45 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.30 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.35 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum UW163 0.45 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.35 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.24 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA low > 88
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.25 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA 0.37 47
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.34 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_00655 tRNA-guanine(34) transglycosylase 0.24 CA264_17725 tRNA pseudouridine synthase A low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.23 Echvi_1728 pseudouridylate synthase I low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.22 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA low > 71
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt 0.23 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA low > 56
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.27 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA low > 72
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.26 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA low > 67
Bacteroides ovatus ATCC 8483 0.41 BACOVA_02570 tRNA-guanine transglycosylase 0.26 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Bacteroides thetaiotaomicron VPI-5482 0.41 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.25 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) — —
Bifidobacterium breve UCC2003 0.34 BBR_RS10715 tRNA-guanine(34) transglycosylase 0.19 BBR_RS18795 tRNA pseudouridine(38-40) synthase TruA low > 34

Not shown: 1 genomes with orthologs for Atu1677 only; 2 genomes with orthologs for Atu0368 only