Conservation of cofitness between Dshi_0083 and Dshi_2639 in Dinoroseobacter shibae DFL-12

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dinoroseobacter shibae DFL-12 1.0 Dshi_0083 3-isopropylmalate dehydratase, small subunit (RefSeq) 1.0 Dshi_2639 carbamoyl-phosphate synthase, large subunit (RefSeq) 0.71 10
Rhodospirillum rubrum S1H 0.80 Rru_A1190 3-isopropylmalate dehydratase small subunit region (NCBI) 0.66 Rru_A2886 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) 0.74 15
Azospirillum sp. SherDot2 0.80 MPMX19_00606 3-isopropylmalate dehydratase small subunit 1 0.66 MPMX19_02299 Carbamoyl-phosphate synthase large chain
Magnetospirillum magneticum AMB-1 0.79 AMB_RS20565 3-isopropylmalate dehydratase small subunit 0.67 AMB_RS03605 carbamoyl-phosphate synthase large subunit
Sinorhizobium meliloti 1021 0.79 SMc03795 isopropylmalate isomerase small subunit 0.64 SMc01215 carbamoyl phosphate synthase large subunit 0.67 89
Rhizobium sp. OAE497 0.79 ABIE40_RS19040 3-isopropylmalate dehydratase small subunit 0.63 ABIE40_RS12815 carbamoyl-phosphate synthase large subunit
Phaeobacter inhibens DSM 17395 0.78 PGA1_c29790 3-isopropylmalate dehydratase small subunit 0.81 PGA1_c24560 carbamoyl-phosphate synthase large chain 0.76 39
Azospirillum brasilense Sp245 0.77 AZOBR_RS14135 isopropylmalate isomerase 0.66 AZOBR_RS12895 carbamoyl phosphate synthase large subunit
Agrobacterium fabrum C58 0.77 Atu2790 3-isopropylmalate dehydratase, small subunit 0.63 Atu2178 carbamoylphosphate synthase large subunit
Rhodopseudomonas palustris CGA009 0.75 TX73_001215 3-isopropylmalate dehydratase small subunit 0.63 TX73_021090 carbamoyl-phosphate synthase large subunit
Bosea sp. OAE506 0.74 ABIE41_RS11640 3-isopropylmalate dehydratase small subunit 0.62 ABIE41_RS11910 carbamoyl-phosphate synthase large subunit
Acinetobacter radioresistens SK82 0.61 MPMX26_00346 3-isopropylmalate dehydratase small subunit 1 0.59 MPMX26_00766 Carbamoyl-phosphate synthase large chain low > 36
Pseudomonas stutzeri RCH2 0.60 Psest_2590 3-isopropylmalate dehydratase, small subunit 0.59 Psest_0968 carbamoyl-phosphate synthase, large subunit
Marinobacter adhaerens HP15 0.60 HP15_1833 isopropylmalate isomerase small subunit 0.58 HP15_3077 carbamoyl-phosphate synthase, large subunit
Pseudomonas putida KT2440 0.59 PP_1986 3-isopropylmalate dehydratase small subunit 0.59 PP_4723 Carbamoyl-phosphate synthase large chain 0.43 65
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02615 3-isopropylmalate dehydratase small subunit 0.58 RALBFv3_RS02190 carbamoyl-phosphate synthase large subunit
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3947 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.58 PfGW456L13_5099 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Ralstonia solanacearum UW163 0.59 UW163_RS11110 3-isopropylmalate dehydratase small subunit 0.58 UW163_RS15500 carbamoyl-phosphate synthase large subunit
Variovorax sp. OAS795 0.59 ABID97_RS08460 3-isopropylmalate dehydratase small subunit 0.57 ABID97_RS17080 carbamoyl-phosphate synthase large subunit
Pseudomonas sp. S08-1 0.59 OH686_04475 3-isopropylmalate dehydratase small subunit 0.58 OH686_17080 Carbamoyl-phosphate synthase large chain
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_14 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.59 Pf1N1B4_1172 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Pseudomonas simiae WCS417 0.59 PS417_18595 3-isopropylmalate dehydratase 0.58 PS417_24040 carbamoyl phosphate synthase large subunit
Pseudomonas sp. RS175 0.59 PFR28_02823 3-isopropylmalate dehydratase small subunit 1 0.58 PFR28_00077 Carbamoyl-phosphate synthase large chain
Dechlorosoma suillum PS 0.59 Dsui_3199 3-isopropylmalate dehydratase, small subunit 0.58 Dsui_3064 carbamoyl-phosphate synthase, large subunit
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit 0.57 BPHYT_RS14190 carbamoyl phosphate synthase large subunit 0.59 57
Ralstonia solanacearum PSI07 0.58 RPSI07_RS14700 3-isopropylmalate dehydratase small subunit 0.58 RPSI07_RS15255 carbamoyl-phosphate synthase large subunit
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_20625 3-isopropylmalate dehydratase 0.59 AO353_05630 carbamoyl phosphate synthase large subunit
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_00195 3-isopropylmalate dehydratase small subunit 0.65 CCNA_02994 carbamoyl-phosphate synthase large chain low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_1984 3-isopropylmalate dehydratase, small subunit 0.59 Psyr_4191 carbamoyl-phosphate synthase large subunit
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_1984 3-isopropylmalate dehydratase, small subunit 0.59 Psyr_4191 carbamoyl-phosphate synthase large subunit
Pseudomonas fluorescens SBW25 0.58 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.58 PFLU_RS25880 carbamoyl-phosphate synthase large subunit
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.58 PFLU_RS25880 carbamoyl-phosphate synthase large subunit
Caulobacter crescentus NA1000 0.58 CCNA_00195 3-isopropylmalate dehydratase small subunit 0.65 CCNA_02994 carbamoyl-phosphate synthase large chain
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1320 3-isopropylmalate dehydratase, small subunit 0.57 B158DRAFT_0616 carbamoyl-phosphate synthase, large subunit
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS14535 3-isopropylmalate dehydratase small subunit 0.58 ABZR87_RS14140 carbamoyl-phosphate synthase large subunit
Ralstonia solanacearum GMI1000 0.58 RS_RS09995 3-isopropylmalate dehydratase small subunit 0.58 RS_RS07630 carbamoyl-phosphate synthase large chain
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_64 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.58 Pf6N2E2_3364 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.58 GFF3361 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.56 GFF4898 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_06073 3-isopropylmalate dehydratase, small subunit 0.57 H281DRAFT_04403 carbamoyl-phosphate synthase large subunit
Variovorax sp. SCN45 0.58 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.57 GFF376 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS17615 3-isopropylmalate dehydratase small subunit 0.57 QEN71_RS04780 carbamoyl-phosphate synthase large subunit
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_21405 3-isopropylmalate dehydratase 0.58 AO356_07480 carbamoyl phosphate synthase large subunit low > 104
Acidovorax sp. GW101-3H11 0.57 Ac3H11_1527 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.57 Ac3H11_436 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Paraburkholderia graminis OAS925 0.57 ABIE53_004803 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit 0.57 ABIE53_003004 carbamoyl-phosphate synthase large subunit
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.58 Xcc-8004.2912.1 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS16505 3-isopropylmalate dehydratase small subunit 0.58 HSERO_RS06925 carbamoyl phosphate synthase large subunit
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS14390 3-isopropylmalate dehydratase 0.58 RR42_RS13510 carbamoyl phosphate synthase large subunit
Castellaniella sp019104865 MT123 0.54 ABCV34_RS04285 3-isopropylmalate dehydratase small subunit 0.58 ABCV34_RS15510 carbamoyl-phosphate synthase large subunit
Dickeya dianthicola ME23 0.53 DZA65_RS19215 3-isopropylmalate dehydratase small subunit 0.59 DZA65_RS19380 carbamoyl-phosphate synthase large subunit 0.75 27
Dickeya dadantii 3937 0.53 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit 0.59 DDA3937_RS18305 carbamoyl-phosphate synthase large subunit 0.75 11
Serratia liquefaciens MT49 0.53 IAI46_03340 3-isopropylmalate dehydratase small subunit 0.59 IAI46_03195 carbamoyl-phosphate synthase large subunit low > 86
Dickeya dianthicola 67-19 0.53 HGI48_RS18070 3-isopropylmalate dehydratase small subunit 0.59 HGI48_RS18240 carbamoyl-phosphate synthase large subunit 0.80 8
Pantoea sp. MT58 0.52 IAI47_16015 3-isopropylmalate dehydratase small subunit 0.59 IAI47_16115 carbamoyl-phosphate synthase large subunit 0.87 46
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_12610 3-isopropylmalate dehydratase small subunit 0.59 CSW01_12100 carbamoyl-phosphate synthase large chain low > 62
Pectobacterium carotovorum WPP14 0.51 HER17_RS03070 3-isopropylmalate dehydratase small subunit 0.59 HER17_RS02900 carbamoyl-phosphate synthase large subunit 0.98 6
Shewanella loihica PV-4 0.51 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) 0.58 Shew_2838 carB carbamoyl phosphate synthase large subunit (RefSeq) 0.88 54
Klebsiella michiganensis M5al 0.51 BWI76_RS04665 3-isopropylmalate dehydratase small subunit 0.59 BWI76_RS04470 carbamoyl phosphate synthase large subunit 0.60 78
Shewanella oneidensis MR-1 0.51 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) 0.59 SO1142 carB carbamoyl-phosphate synthase, large subunit (NCBI ptt file) 0.89 56
Erwinia tracheiphila SCR3 0.50 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit 0.59 LU632_RS02750 carB carbamoyl-phosphate synthase large subunit 0.73 33
Escherichia coli ECRC62 0.50 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit 0.59 BNILDI_08330 carB carbamoyl-phosphate synthase large subunit
Escherichia coli ECOR27 0.50 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit 0.59 NOLOHH_03270 carB carbamoyl-phosphate synthase large subunit low > 57
Escherichia coli BW25113 0.50 b0071 leuD isopropylmalate isomerase small subunit (NCBI) 0.59 b0033 carB carbamoyl-phosphate synthase large subunit (NCBI) 0.84 58
Shewanella sp. ANA-3 0.50 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) 0.59 Shewana3_0968 carB carbamoyl phosphate synthase large subunit (RefSeq) 0.91 38
Enterobacter asburiae PDN3 0.50 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit 0.59 EX28DRAFT_3638 carbamoyl-phosphate synthase, large subunit
Escherichia coli BL21 0.50 ECD_00073 3-isopropylmalate dehydratase small subunit 0.59 ECD_00037 carbamoyl-phosphate synthase large subunit low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit 0.59 OHPLBJKB_03624 Carbamoyl-phosphate synthase large chain low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.59 GFF213 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) low > 78
Shewanella amazonensis SB2B 0.50 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) 0.59 Sama_2503 carB carbamoyl phosphate synthase large subunit (RefSeq) low > 62
Escherichia coli ECRC101 0.50 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit 0.59 OKFHMN_10940 carB carbamoyl-phosphate synthase large subunit
Escherichia fergusonii Becca 0.50 EFB2_03974 3-isopropylmalate dehydratase small subunit 0.59 EFB2_04012 Carbamoyl-phosphate synthase large chain low > 86
Escherichia coli ECRC98 0.50 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit 0.59 JDDGAC_14535 carB carbamoyl-phosphate synthase large subunit
Escherichia coli ECOR38 0.50 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit 0.59 HEPCGN_08925 carB carbamoyl-phosphate synthase large subunit low > 85
Escherichia coli Nissle 1917 0.50 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit 0.59 ECOLIN_RS00180 carbamoyl-phosphate synthase large subunit low > 52
Escherichia coli ECRC102 0.50 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit 0.59 NIAGMN_08790 carB carbamoyl-phosphate synthase large subunit
Escherichia coli ECRC99 0.50 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit 0.59 KEDOAH_17215 carB carbamoyl-phosphate synthase large subunit
Escherichia coli ECRC101 0.50 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit 0.59 MCAODC_01455 carB carbamoyl-phosphate synthase large subunit
Rahnella sp. WP5 0.50 EX31_RS03695 3-isopropylmalate dehydratase small subunit 0.59 EX31_RS03830 carbamoyl-phosphate synthase large subunit 0.96 21
Enterobacter sp. TBS_079 0.49 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 0.59 MPMX20_00740 Carbamoyl-phosphate synthase large chain 0.79 52
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_4225 3-isopropylmalate dehydratase, small subunit 0.64 Ga0059261_0007 carbamoyl-phosphate synthase, large subunit
Alteromonas macleodii MIT1002 0.46 MIT1002_00946 3-isopropylmalate dehydratase small subunit 1 0.59 MIT1002_01467 Carbamoyl-phosphate synthase large chain 0.94 36
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_09440 3-isopropylmalate dehydratase small subunit 0.40 CA264_15430 carbamoyl phosphate synthase large subunit low > 74
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit 0.59 ABZR86_RS05600 carbamoyl-phosphate synthase large subunit
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS14140 3-isopropylmalate dehydratase small subunit 0.33 HMPREF1181_RS16075 carbamoyl-phosphate synthase large subunit low > 56
Rhodanobacter denitrificans MT42 0.43 LRK55_RS09970 3-isopropylmalate dehydratase small subunit 0.59 LRK55_RS17855 carbamoyl-phosphate synthase large subunit
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_13590 leuD 3-isopropylmalate dehydratase small subunit 0.59 OKGIIK_07295 carB carbamoyl-phosphate synthase large subunit low > 52
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS15840 3-isopropylmalate dehydratase small subunit 0.40 CA265_RS20080 carbamoyl phosphate synthase large subunit
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS10330 3-isopropylmalate dehydratase small subunit 0.59 LRK54_RS18000 carbamoyl-phosphate synthase large subunit
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS11600 3-isopropylmalate dehydratase small subunit 0.42 ABZR88_RS20475 carbamoyl-phosphate synthase large subunit
Parabacteroides merdae CL09T00C40 0.42 HMPREF1078_RS16655 3-isopropylmalate dehydratase small subunit 0.33 HMPREF1078_RS01300 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_2060 3-isopropylmalate dehydratase, small subunit 0.40 Echvi_0768 carbamoyl-phosphate synthase, large subunit
Bifidobacterium breve UCC2003 0.40 BBR_RS19625 3-isopropylmalate dehydratase small subunit 0.50 BBR_RS13635 carbamoyl-phosphate synthase large subunit 0.48 32
Lysobacter sp. OAE881 0.40 ABIE51_RS17580 3-isopropylmalate dehydratase small subunit 0.58 ABIE51_RS11615 carbamoyl-phosphate synthase large subunit low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS10000 3-isopropylmalate dehydratase small subunit 0.64 A4249_RS00725 carbamoyl-phosphate synthase large subunit
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS14555 3-isopropylmalate dehydratase small subunit 0.35 HMPREF1058_RS06870 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS10205 3-isopropylmalate dehydratase small subunit 0.34 ABI39_RS20665 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit low > 72
Bacteroides ovatus ATCC 8483 0.39 BACOVA_04602 3-isopropylmalate dehydratase, small subunit 0.34 BACOVA_03752 carbamoyl-phosphate synthase, large subunit low > 94
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1859 3-isopropylmalate dehydratase small subunit (NCBI ptt file) 0.34 BT0557 carbamyl phosphate synthetase (NCBI ptt file) low > 81
Mycobacterium tuberculosis H37Rv 0.34 Rv2987c Probable 3-isopropylmalate dehydratase (small subunit) LeuD (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.50 Rv1384 Probable carbamoyl-phosphate synthase large chain CarB (carbamoyl-phosphate synthetase ammonia chain)

Not shown: 0 genomes with orthologs for Dshi_0083 only; 6 genomes with orthologs for Dshi_2639 only