Conservation of cofitness between b2616 and b3652 in Escherichia coli BW25113

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2616 recN recombination and repair protein (NCBI) 1.0 b3652 recG ATP-dependent DNA helicase (NCBI) 0.61 3
Escherichia coli ECRC62 1.00 BNILDI_11620 recN DNA repair protein RecN 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01091 DNA repair protein RecN 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG low > 73
Escherichia coli ECOR27 1.00 NOLOHH_12815 recN DNA repair protein RecN 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 57
Escherichia coli BL21 1.00 ECD_02504 recombination and repair protein 1.00 ECD_03509 ATP-dependent DNA helicase low > 60
Escherichia coli ECRC99 0.99 KEDOAH_07075 recN DNA repair protein RecN 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC101 0.99 OKFHMN_21145 recN DNA repair protein RecN 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC102 0.99 NIAGMN_18915 recN DNA repair protein RecN 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC101 0.99 MCAODC_11670 recN DNA repair protein RecN 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC98 0.99 JDDGAC_24810 recN DNA repair protein RecN 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG — —
Escherichia fergusonii Becca 0.99 EFB2_01277 DNA repair protein RecN 0.99 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECOR38 0.99 HEPCGN_20265 recN DNA repair protein RecN 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14775 DNA repair protein RecN 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4162 DNA repair protein RecN 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 78
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2719 DNA repair protein RecN 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03486 DNA repair protein RecN 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.24 7
Klebsiella michiganensis M5al 0.84 BWI76_RS21560 DNA repair protein RecN 0.91 BWI76_RS27440 DNA helicase RecG low > 92
Serratia liquefaciens MT49 0.77 IAI46_19635 DNA repair protein RecN 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.47 19
Pantoea sp. MT58 0.77 IAI47_04810 DNA repair protein RecN 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.31 75
Rahnella sp. WP5 0.75 EX31_RS21760 DNA repair protein RecN 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Dickeya dadantii 3937 0.73 DDA3937_RS04325 DNA repair protein RecN 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.53 28
Erwinia tracheiphila SCR3 0.73 LU632_RS16985 recN DNA repair protein RecN 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS04320 DNA repair protein RecN 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS04235 DNA repair protein RecN 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Pectobacterium carotovorum WPP14 0.72 HER17_RS17420 DNA repair protein RecN 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Shewanella oneidensis MR-1 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.38 19
Shewanella sp. ANA-3 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Shewanella amazonensis SB2B 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.37 36
Shewanella loihica PV-4 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_04395 DNA repair protein RecN 0.66 CSW01_13680 DNA helicase RecG low > 62
Alteromonas macleodii MIT1002 0.43 MIT1002_01443 Recombination protein N 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5106 DNA repair protein RecN 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.36 16
Marinobacter adhaerens HP15 0.40 HP15_3084 DNA repair protein RecN 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.85 9
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.46 13
Pseudomonas sp. S08-1 0.39 OH686_17050 DNA repair protein RecN 0.54 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas simiae WCS417 0.39 PS417_24070 recombination and repair protein 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.27 18
Pseudomonas sp. RS175 0.39 PFR28_00071 DNA repair protein RecN 0.54 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25910 DNA repair protein RecN 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07510 DNA repair protein RecN 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.47 17
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25910 DNA repair protein RecN 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.32 6
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05660 DNA repair protein RecN 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.46 14
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4197 DNA replication and repair protein RecN 0.54 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4197 DNA replication and repair protein RecN 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.47 3
Pseudomonas stutzeri RCH2 0.38 Psest_0962 DNA repair protein RecN 0.55 Psest_4192 ATP-dependent DNA helicase RecG — —
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS03060 DNA repair protein 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.34 18
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26535 DNA repair protein RecN 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Pseudomonas putida KT2440 0.37 PP_4729 factor used in recombination and DNA repair 0.55 PP_5310 junction-specific ATP-dependent DNA helicase low > 96
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.48 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 29
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.31 8
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.44 RPSI07_RS11625 DNA helicase RecG low > 81
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.44 UW163_RS07950 DNA helicase RecG — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.44 RALBFv3_RS05675 DNA helicase RecG 0.50 18
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS05910 DNA repair protein 0.44 RR42_RS17390 ATP-dependent DNA helicase RecG 0.45 16
Paraburkholderia graminis OAS925 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.45 RS_RS13565 DNA helicase RecG — —
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04692 DNA replication and repair protein RecN 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS03560 DNA repair protein 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05665 DNA repair protein RecN 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.84 5
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07470 DNA repair protein RecN 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 52
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Dechlorosoma suillum PS 0.33 Dsui_3072 DNA repair protein RecN 0.41 Dsui_0311 ATP-dependent DNA helicase RecG 0.84 8
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Acidovorax sp. GW101-3H11 0.32 Ac3H11_3460 DNA repair protein RecN 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.64 83
Lysobacter sp. OAE881 0.31 ABIE51_RS11655 DNA repair protein RecN 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.75 1
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Acinetobacter radioresistens SK82 0.29 MPMX26_00239 DNA repair protein RecN 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.33 SMc00228 ATP-dependent DNA helicase RecG 0.69 1
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.34 Atu1780 ATP-dependent DNA helicase 0.52 4
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS06580 DNA repair protein RecN 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG low > 71
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 4
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Bosea sp. OAE506 0.24 ABIE41_RS12645 DNA repair protein RecN 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.49 35
Azospirillum brasilense Sp245 0.24 AZOBR_RS12395 DNA repair protein RecN 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG — —
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG 0.47 8
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.30 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.26 51
Azospirillum sp. SherDot2 0.24 MPMX19_01601 DNA repair protein RecN 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.76 4
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS14855 DNA repair protein RecN 0.31 CA265_RS22835 ATP-dependent DNA helicase RecG 0.69 11
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS18225 DNA repair protein RecN 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS14500 DNA repair protein RecN 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.33 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02620 DNA repair protein RecN 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Fusobacterium nucleatum SB010 0.22 HUW76_08055 DNA repair protein RecN 0.30 HUW76_01465 ATP-dependent DNA helicase RecG low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_13235 DNA repair protein RecN 0.31 CA264_15020 DNA helicase RecG 0.51 21
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.31 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.31 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Mycobacterium tuberculosis H37Rv 0.21 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG low > 58

Not shown: 4 genomes with orthologs for b2616 only; 2 genomes with orthologs for b3652 only