Homologs of SGL_RS12505 from Synechocystis sp000284455 PCC 6803

ribosome-associated translation inhibitor RaiA
SEED: Ribosomal subunit interface protein
KEGG: putative sigma-54 modulation protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Synechocystis sp000284455 PCC 6803 SGL_RS12505 ribosome-associated translation inhibitor RaiA cofit 100 100
o Synechococcus elongatus PCC 7942 Synpcc7942_2352 lrtA sigma 54 modulation protein / SSU ribosomal protein S30P insig. 62 98
o Fusobacterium nucleatum SB010 HUW76_07850 ribosome-associated translation inhibitor RaiA strong 34 97
o Mycobacterium tuberculosis H37Rv Rv3241c Conserved protein insig. 29 97
o Desulfovibrio vulgaris Miyazaki F DvMF_0426 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 28 98
o Desulfovibrio vulgaris Hildenborough JW710 DVU1629 yfiA ribosomal subunit interface protein (TIGR) strong 31 98
o Phaeobacter inhibens DSM 17395 PGA1_c35970 putative sigma(54) modulation protein sig. 27 98
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 37 56
  Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 36 52
  Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 35 52
  Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 40 56
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 35 52
  Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 35 52
  Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 35 52
  Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 37 59
o Sinorhizobium meliloti 1021 SMc01140 SIGMA54 modulation protein no data 25 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 35 56
  Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 35 56
  Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 39 55
  Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 35 56
  Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 37 55
  Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 33 56
  Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 33 54
  Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 33 56
  Pseudomonas segetis P6 MPMX49_03859 Ribosome hibernation promoting factor strong 38 54
  Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 34 56
  Pseudomonas aeruginosa PA14 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein strong 39 54
o Dinoroseobacter shibae DFL-12 Dshi_3583 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) sig. 27 97
o Xanthobacter sp. DMC5 GFF3924 Ribosome hibernation promotion factor insig. 26 98
  Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 35 56
  Pseudomonas sp. DMC3 GFF1827 Ribosome hibernation promoting factor insig. 35 54
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 40 51
  Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor insig. 39 54
  Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 37 51
  Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 37 51
  Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 37 54
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 37 54
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 37 54
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 37 54
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 37 54
  Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor insig. 37 54
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 37 54
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 37 54
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 37 54
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 37 54
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 37 54
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 37 54
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 37 54
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 37 54
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 35 54
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 35 54
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 35 54
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 35 54
o Bifidobacterium breve UCC2003 BBR_RS16520 ribosome-associated translation inhibitor RaiA strong 26 97
  Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 37 54
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 35 54
  Methylophilus sp. DMC18 GFF2268 Ribosome hibernation promoting factor cofit 35 56
  Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 37 51
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2191 ribosomal subunit interface protein strong 24 100
  Pseudomonas sp. BP01 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 36 54
  Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 35 54
  Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 34 54
  Pseudomonas sp. SVBP6 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 34 54
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 34 54
  Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 34 54
  Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 34 54
  Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 35 52
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 35 52
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 34 54
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 34 54
  Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 33 54
  Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 33 53
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 33 53
  Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 33 54
  Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 33 53
o Agrobacterium fabrum C58 Atu0331 sigma-54 modulation protein strong 26 97
  Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 34 54
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS15710 ribosome-associated translation inhibitor RaiA insig. 33 53
  Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 33 51
  Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 31 52
  Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 33 51
  Klebsiella pneumoniae MKP103 KDGMDA_06085 ribosome hibernation promoting factor insig. 32 54
o Rhizobium sp. OAE497 ABIE40_RS01865 ribosome-associated translation inhibitor RaiA sig. 23 97
  Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 33 51
  Erwinia amylovora T8 OLJFJH_07065 ribosome hibernation promoting factor sig. 31 54
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13735 hpf ribosome hibernation promoting factor insig. 31 54
  Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 28 52
o Rhodopseudomonas palustris CGA009 TX73_000265 ribosome-associated translation inhibitor RaiA cofit 20 98
  Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 31 54
  Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 33 51
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 33 51
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01074 Ribosome hibernation promoting factor no data 33 51
  Phocaeicola dorei CL03T12C01 ABI39_RS03830 ribosome-associated translation inhibitor RaiA strong 29 53
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09440 ribosome-associated translation inhibitor RaiA strong 29 53
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09355 ribosome hibernation promoting factor cofit 27 52
  Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 30 51
  Acinetobacter radioresistens SK82 MPMX26_02591 Ribosome hibernation promoting factor no data 29 50
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1661.1 Ribosome hibernation protein YhbH insig. 31 51
  Bosea sp. OAE506 ABIE41_RS00120 ribosome-associated translation inhibitor RaiA insig. 28 98
  Sphingobium sp. HT1-2 GFF4166 Ribosome hibernation promoting factor Hpf cofit 19 98