Homologs of PP_4693 from Pseudomonas putida KT2440

RNA polymerase-binding transcription factor DksA
SEED: C4-type zinc finger protein, DksA/TraR family
KEGG: DnaK suppressor protein

156 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4693 RNA polymerase-binding transcription factor DksA strong 100 100
o Pseudomonas sp. BP01 JOY50_RS27695 dksA RNA polymerase-binding protein DksA cofit 88 100
o Pseudomonas sp. SVBP6 COO64_RS15070 dksA RNA polymerase-binding protein DksA strong 86 100
o Pseudomonas orientalis W4I3 QF045_RS26135 RNA polymerase-binding protein DksA cofit 80 99
o Pseudomonas simiae WCS417 PS417_23875 molecular chaperone DnaK no data 80 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1528 C4-type zinc finger protein, DksA/TraR family insig. 80 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04926 RNA polymerase-binding transcription factor DksA strong 80 99
o Pseudomonas fluorescens SBW25 PFLU_RS25715 RNA polymerase-binding protein DksA strong 78 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25715 RNA polymerase-binding protein DksA strong 78 99
o Pseudomonas fluorescens FW300-N2C3 AO356_16095 molecular chaperone DnaK strong 78 99
o Pseudomonas sp. RS175 PFR28_03714 RNA polymerase-binding transcription factor DksA strong 77 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2862 C4-type zinc finger protein, DksA/TraR family no data 76 99
o Pseudomonas fluorescens FW300-N2E3 AO353_14420 molecular chaperone DnaK strong 76 99
o Pseudomonas syringae pv. syringae B728a Psyr_0835 transcriptional regulator, TraR/DksA family strong 78 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0835 transcriptional regulator, TraR/DksA family strong 78 99
o Pseudomonas protegens RBAN4 FABNJH_26620 dksA RNA polymerase-binding protein DksA sig. 76 99
o Pseudomonas sp. DMC3 GFF4034 RNA polymerase-binding transcription factor DksA strong 76 99
o Pseudomonas segetis P6 ACVTMO_RS06235 dksA RNA polymerase-binding protein DksA no data 74 99
o Pseudomonas aeruginosa MRSN321 DY961_RS09350 dksA;go_function=enzyme RNA polymerase-binding protein DksA strong 73 99
o Pseudomonas aeruginosa PA14 IKLFDK_30000 RNA polymerase-binding protein DksA strong 73 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS52680 dksA;go_function=enzyme RNA polymerase-binding protein DksA strong 73 99
o Pseudomonas sp. S08-1 OH686_17280 RNA polymerase-binding protein DksA no data 71 99
o Pseudomonas stutzeri RCH2 Psest_1003 RNA polymerase-binding protein DksA no data 69 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5160 C4-type zinc finger protein, DksA/TraR family strong 83 81
o Pectobacterium carotovorum WPP14 HER17_RS05580 RNA polymerase-binding protein DksA strong 67 91
o Serratia liquefaciens MT49 IAI46_21210 RNA polymerase-binding protein DksA strong 66 91
o Kangiella aquimarina DSM 16071 B158DRAFT_0056 transcriptional regulator, TraR/DksA family strong 66 98
o Dickeya dadantii 3937 DDA3937_RS15935 RNA polymerase-binding protein DksA no data 67 91
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_15060 dksA RNA polymerase-binding protein DksA no data 66 91
o Erwinia tracheiphila SCR3 LU632_RS20080 dksA RNA polymerase-binding protein DksA no data 66 91
o Klebsiella pneumoniae MKP103 KDGMDA_13270 RNA polymerase-binding protein DksA no data 66 91
o Klebsiella pneumoniae MRSN742743 KFA93_RS11715 dksA;inference=COORDINATES RNA polymerase-binding protein DksA strong 66 91
o Enterobacter asburiae PDN3 EX28DRAFT_3734 transcriptional regulator, TraR/DksA family no data 66 91
o Enterobacter sp. TBS_079 MPMX20_00831 RNA polymerase-binding transcription factor DksA strong 66 91
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF87 C4-type zinc finger protein, DksA/TraR family insig. 66 91
o Escherichia coli BL21 ECD_00144 transcriptional regulator of rRNA transcription; DnaK suppressor protein no data 66 91
o Escherichia fergusonii Becca EFB2_03899 RNA polymerase-binding transcription factor DksA strong 66 91
o Escherichia coli ECOR27 NOLOHH_02690 dksA RNA polymerase-binding protein DksA strong 66 91
o Escherichia coli ECOR38 HEPCGN_08295 dksA RNA polymerase-binding protein DksA strong 66 91
o Escherichia coli ECRC100 OKFHMN_10345 dksA RNA polymerase-binding protein DksA strong 66 91
o Escherichia coli ECRC101 MCAODC_00860 dksA RNA polymerase-binding protein DksA strong 66 91
o Escherichia coli ECRC102 NIAGMN_08195 dksA RNA polymerase-binding protein DksA strong 66 91
o Escherichia coli ECRC62 BNILDI_08980 dksA RNA polymerase-binding protein DksA strong 66 91
o Escherichia coli ECRC98 JDDGAC_13940 dksA RNA polymerase-binding protein DksA strong 66 91
o Escherichia coli ECRC99 KEDOAH_17810 dksA RNA polymerase-binding protein DksA no data 66 91
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03517 RNA polymerase-binding transcription factor DksA sig. 66 91
  Escherichia coli Nissle 1917 ECOLIN_RS00800 RNA polymerase-binding protein DksA no data 66 91
  Escherichia coli Nissle 1917 ECOLIN_RS00815 RNA polymerase-binding protein DksA no data 66 91
o Escherichia coli BW25113 b0145 dksA DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) strong 66 91
o Dickeya dianthicola 67-19 HGI48_RS16050 RNA polymerase-binding protein DksA insig. 66 91
o Dickeya dianthicola ME23 DZA65_RS17135 RNA polymerase-binding protein DksA no data 66 91
o Rahnella sp. WP5 EX31_RS03250 RNA polymerase-binding protein DksA strong 66 91
o Vibrio cholerae E7946 ATCC 55056 CSW01_03155 RNA polymerase-binding transcription factor DksA cofit 69 89
o Erwinia amylovora T8 OLJFJH_00765 RNA polymerase-binding protein DksA no data 66 91
o Klebsiella michiganensis M5al BWI76_RS05015 transcriptional regulator strong 65 91
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS15950 dksA RNA polymerase-binding protein DksA strong 64 91
o Pantoea sp. MT58 IAI47_15635 RNA polymerase-binding protein DksA strong 64 91
o Shewanella loihica PV-4 Shew_3129 TraR/DksA family transcriptional regulator (RefSeq) no data 66 91
o Shewanella amazonensis SB2B Sama_0780 TraR/DksA family transcriptional regulator (RefSeq) strong 65 91
o Shewanella oneidensis MR-1 SO0874 dksA DnaK suppressor protein (NCBI ptt file) no data 64 91
o Shewanella sp. ANA-3 Shewana3_3404 TraR/DksA family transcriptional regulator (RefSeq) sig. 64 91
o Marinobacter adhaerens HP15 HP15_332 transcriptional regulator, TraR/DksA family no data 58 99
  Acinetobacter radioresistens SK82 MPMX26_00177 RNA polymerase-binding transcription factor DksA strong 64 89
o Alteromonas macleodii MIT1002 MIT1002_03690 DnaK suppressor protein strong 65 86
  Acinetobacter baumannii LAC-4 RR41_RS17730 RNA polymerase-binding protein DksA no data 61 91
o Methylophilus sp. DMC18 GFF2238 RNA polymerase-binding transcription factor DksA no data 62 90
o Dechlorosoma suillum PS Dsui_2717 RNA polymerase-binding protein DksA strong 60 89
o Rhizobium sp. OAE497 ABIE40_RS10345 RNA polymerase-binding protein DksA strong 47 87
o Agrobacterium fabrum C58 Atu1359 dnaK deletion suppressor protein strong 45 87
o Sinorhizobium meliloti 1021 SMc00469 DnaK suppressor protein no data 43 87
  Caulobacter crescentus NA1000 CCNA_02663 DnaK suppressor protein DksA strong 46 79
  Caulobacter crescentus NA1000 Δfur CCNA_02663 DnaK suppressor protein DksA cofit 46 79
o Azospirillum brasilense Sp245 AZOBR_RS11245 molecular chaperone DnaK no data 45 85
o Rhodospirillum rubrum S1H Rru_A2847 Transcriptional regulators, TraR/DksA family (NCBI) cofit 48 85
o Dinoroseobacter shibae DFL-12 Dshi_1884 transcriptional regulator, TraR/DksA family (RefSeq) no data 44 85
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08530 RNA polymerase-binding protein DksA strong 47 81
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF550 C4-type zinc finger protein, DksA/TraR family sig. 42 86
o Rhodopseudomonas palustris CGA009 TX73_020255 RNA polymerase-binding protein DksA strong 46 85
o Magnetospirillum magneticum AMB-1 AMB_RS19350 RNA polymerase-binding protein DksA no data 44 85
o Azospirillum sp. SherDot2 MPMX19_01492 RNA polymerase-binding transcription factor DksA insig. 44 85
o Xanthobacter sp. DMC5 GFF1254 RNA polymerase-binding transcription factor DksA no data 43 85
o Phaeobacter inhibens DSM 17395 PGA1_c11040 dnaK suppressor protein DksA strong 40 91
o Ralstonia solanacearum PSI07 RPSI07_RS23720 RNA polymerase-binding protein DksA strong 45 82
  Rhodanobacter denitrificans MT42 LRK55_RS02195 RNA polymerase-binding protein DksA no data 43 86
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02440 RNA polymerase-binding protein DksA strong 43 86
  Lysobacter sp. OAE881 ABIE51_RS13450 RNA polymerase-binding protein DksA no data 44 86
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS07505 RNA polymerase-binding protein DksA no data 43 86
o Ralstonia sp. UNC404CL21Col ABZR87_RS05100 RNA polymerase-binding protein DksA strong 43 82
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2307.1 C4-type zinc finger protein, DksA/TraR family no data 43 86
  Rhodanobacter sp. FW510-T8 OKGIIK_09500 dksA RNA polymerase-binding protein DksA sig. 43 86
  Variovorax sp. SCN45 GFF4486 DksA family protein PA5536 (no Zn-finger) no data 44 82
o Cupriavidus basilensis FW507-4G11 RR42_RS01030 molecular chaperone DnaK no data 44 82
o Herbaspirillum seropedicae SmR1 HSERO_RS00840 molecular chaperone DnaK no data 45 82
  Variovorax sp. OAS795 ABID97_RS06170 RNA polymerase-binding protein DksA no data 44 82
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08750 RNA polymerase-binding protein DksA no data 42 86
o Bosea sp. OAE506 ABIE41_RS13460 RNA polymerase-binding protein DksA strong 41 86
  Acidovorax sp. GW101-3H11 Ac3H11_2002 C4-type zinc finger protein, DksA/TraR family insig. 44 82
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS09645 RNA polymerase-binding protein DksA strong 39 93
o Ralstonia solanacearum UW163 UW163_RS03935 RNA polymerase-binding protein DksA insig. 39 93
o Castellaniella sp019104865 MT123 ABCV34_RS13420 RNA polymerase-binding protein DksA no data 43 82
  Paraburkholderia graminis OAS925 ABIE53_000423 DnaK suppressor protein strong 44 82
o Paraburkholderia sabiae LMG 24235 QEN71_RS00340 RNA polymerase-binding protein DksA no data 43 82
o Ralstonia solanacearum GMI1000 RS_RS00230 RNA polymerase-binding protein DksA cofit 42 82
  Desulfovibrio vulgaris Miyazaki F DvMF_0008 transcriptional regulator, TraR/DksA family (RefSeq) no data 46 76
  Burkholderia phytofirmans PsJN BPHYT_RS01640 molecular chaperone DnaK no data 42 82
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02205 transcriptional regulator, TraR/DksA family insig. 42 82
o Sphingobium sp. HT1-2 GFF2254 DksA family protein PA5536 (no Zn-finger) strong 40 85
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0274 transcriptional regulator, TraR/DksA family strong 40 85
  Desulfovibrio vulgaris Hildenborough JW710 DVU2150 dksA dnaK suppressor protein, putative (TIGR) sig. 44 76
  Pseudomonas fluorescens SBW25 PFLU_RS29955 RNA polymerase-binding protein DksA insig. 42 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29955 RNA polymerase-binding protein DksA insig. 42 80
  Pseudomonas sp. S08-1 OH686_23510 RNA polymerase-binding protein DksA insig. 39 80
  Pseudomonas aeruginosa MRSN321 DY961_RS25985 dksA;go_function=enzyme RNA polymerase-binding protein DksA sig. 40 80
  Pseudomonas aeruginosa PA14 IKLFDK_25730 RNA polymerase-binding protein DksA no data 40 80
  Pseudomonas aeruginosa PUPa3 DQ20_RS58410 dksA;go_function=enzyme RNA polymerase-binding protein DksA sig. 40 80
  Pseudomonas segetis P6 ACVTMO_RS10135 dksA RNA polymerase-binding protein DksA insig. 38 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1993 C4-type zinc finger protein, DksA/TraR family insig. 39 80
  Pseudomonas protegens RBAN4 FABNJH_31150 dksA RNA polymerase-binding protein DksA insig. 39 78
  Pseudomonas simiae WCS417 PS417_28290 molecular chaperone DnaK no data 41 72
  Pseudomonas sp. BP01 JOY50_RS14115 dksA RNA polymerase-binding protein DksA no data 36 82
  Pseudomonas stutzeri RCH2 Psest_0748 RNA polymerase-binding protein DksA no data 39 80
  Pseudomonas sp. RS175 PFR28_02414 RNA polymerase-binding transcription factor DksA sig. 33 81
  Pseudomonas fluorescens FW300-N2C3 AO356_23215 conjugal transfer protein TraR strong 33 81
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_525 C4-type zinc finger protein, DksA/TraR family strong 33 81
  Serratia liquefaciens MT49 IAI46_09985 RNA polymerase-binding protein DksA insig. 34 82
  Pseudomonas sp. DMC3 GFF1724 RNA polymerase-binding transcription factor DksA cofit 32 81
  Pseudomonas syringae pv. syringae B728a Psyr_3262 dnaK suppressor protein, putative sig. 32 81
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3262 dnaK suppressor protein, putative no data 32 81
  Pseudomonas fluorescens FW300-N2E3 AO353_21400 conjugal transfer protein TraR strong 32 81
  Pseudomonas protegens RBAN4 FABNJH_13560 dksA DksA C4-type domain-containing protein insig. 31 81
  Pseudomonas putida KT2440 PP_2220 C4-type zinc finger protein, DksA/TraR family sig. 31 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4288 C4-type zinc finger protein, DksA/TraR family no data 30 81
  Pseudomonas sp. SVBP6 COO64_RS19355 TraR/DksA C4-type zinc finger protein insig. 33 81
  Pseudomonas sp. BP01 JOY50_RS12615 TraR/DksA C4-type zinc finger protein insig. 31 82
  Pseudomonas fluorescens SBW25 PFLU_RS12635 conjugal transfer protein TraR insig. 31 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS12635 conjugal transfer protein TraR sig. 31 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02662 RNA polymerase-binding transcription factor DksA cofit 31 81
  Pseudomonas orientalis W4I3 QF045_RS14635 TraR/DksA C4-type zinc finger protein no data 31 81
  Pseudomonas simiae WCS417 PS417_11900 conjugal transfer protein TraR strong 31 81
  Desulfovibrio vulgaris Miyazaki F DvMF_2168 transcriptional regulator, TraR/DksA family (RefSeq) insig. 30 81
  Acidovorax sp. GW101-3H11 Ac3H11_819 transcriptional regulators, TraR/DksA family insig. 29 74
  Kangiella aquimarina DSM 16071 B158DRAFT_1936 transcriptional regulator, TraR/DksA family insig. 30 72
  Herbaspirillum seropedicae SmR1 HSERO_RS12015 molecular chaperone DnaK sig. 46 28
  Desulfovibrio vulgaris Hildenborough JW710 DVU0878 dnaK suppressor protein, putative (TIGR) insig. 42 29
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_5427 C4-type zinc finger protein, DksA/TraR family insig. 28 83
  Desulfovibrio vulgaris Hildenborough JW710 DVU0039 C4-type zinc finger protein, DksA/TraR family (TIGR) insig. 34 50
  Ralstonia sp. UNC404CL21Col ABZR87_RS20045 TraR/DksA family transcriptional regulator insig. 35 37
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS10200 TraR/DksA C4-type zinc finger protein insig. 29 79
  Desulfovibrio vulgaris Miyazaki F DvMF_1239 transcriptional regulator, TraR/DksA family (RefSeq) insig. 36 34
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS02020 conjugal transfer protein TraR cofit 29 51
  Ralstonia solanacearum UW163 UW163_RS15345 conjugal transfer protein TraR insig. 29 51
  Dinoroseobacter shibae DFL-12 Dshi_1411 transcriptional regulator, TraR/DksA family (RefSeq) insig. 39 30
  Dinoroseobacter shibae DFL-12 Dshi_2385 transcriptional regulator, TraR/DksA family (RefSeq) insig. 44 28
  Variovorax sp. SCN45 GFF7242 hypothetical protein insig. 33 51
  Ralstonia solanacearum GMI1000 RS_RS07585 conjugal transfer protein TraR insig. 33 39
  Dinoroseobacter shibae DFL-12 Dshi_0812 transcriptional regulator, TraR/DksA family (RefSeq) insig. 44 29